data_8ABG # _model_server_result.job_id B47pjaYIeG2kmFb5UZ7hSg _model_server_result.datetime_utc '2024-10-11 11:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":502}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . V 11 144.18 135.855 148.776 1 26.5 ? CHA HEM 502 C 1 HETATM 2 C CHB HEM . . . V 11 146.714 137.059 144.736 1 26.29 ? CHB HEM 502 C 1 HETATM 3 C CHC HEM . . . V 11 142.559 137.468 142.241 1 25.24 ? CHC HEM 502 C 1 HETATM 4 C CHD HEM . . . V 11 140.046 136.767 146.408 1 26 ? CHD HEM 502 C 1 HETATM 5 C C1A HEM . . . V 11 145.19 136.073 147.84 1 26.67 ? C1A HEM 502 C 1 HETATM 6 C C2A HEM . . . V 11 146.571 135.956 148.145 1 28.1 ? C2A HEM 502 C 1 HETATM 7 C C3A HEM . . . V 11 147.298 136.287 147.029 1 27.41 ? C3A HEM 502 C 1 HETATM 8 C C4A HEM . . . V 11 146.37 136.623 146.012 1 26.6 ? C4A HEM 502 C 1 HETATM 9 C CMA HEM . . . V 11 148.809 136.281 146.886 1 25.94 ? CMA HEM 502 C 1 HETATM 10 C CAA HEM . . . V 11 147.16 135.514 149.47 1 29.07 ? CAA HEM 502 C 1 HETATM 11 C CBA HEM . . . V 11 147.621 134.038 149.283 1 32.63 ? CBA HEM 502 C 1 HETATM 12 C CGA HEM . . . V 11 146.513 133.07 148.89 1 34.29 ? CGA HEM 502 C 1 HETATM 13 O O1A HEM . . . V 11 146.507 132.422 147.816 1 35.09 ? O1A HEM 502 C 1 HETATM 14 O O2A HEM . . . V 11 145.536 132.841 149.646 1 37.15 ? O2A HEM 502 C 1 HETATM 15 C C1B HEM . . . V 11 145.763 137.287 143.72 1 25.52 ? C1B HEM 502 C 1 HETATM 16 C C2B HEM . . . V 11 146.119 137.694 142.41 1 26.34 ? C2B HEM 502 C 1 HETATM 17 C C3B HEM . . . V 11 144.939 137.794 141.703 1 26.68 ? C3B HEM 502 C 1 HETATM 18 C C4B HEM . . . V 11 143.879 137.499 142.652 1 26.04 ? C4B HEM 502 C 1 HETATM 19 C CMB HEM . . . V 11 147.54 137.921 141.931 1 25.44 ? CMB HEM 502 C 1 HETATM 20 C CAB HEM . . . V 11 144.664 138.124 140.289 1 28.34 ? CAB HEM 502 C 1 HETATM 21 C CBB HEM . . . V 11 145.547 138.856 139.649 1 28.24 ? CBB HEM 502 C 1 HETATM 22 C C1C HEM . . . V 11 141.53 137.215 143.137 1 25.83 ? C1C HEM 502 C 1 HETATM 23 C C2C HEM . . . V 11 140.177 137.039 142.816 1 25.55 ? C2C HEM 502 C 1 HETATM 24 C C3C HEM . . . V 11 139.519 136.868 144.025 1 25.95 ? C3C HEM 502 C 1 HETATM 25 C C4C HEM . . . V 11 140.453 136.87 145.088 1 26.08 ? C4C HEM 502 C 1 HETATM 26 C CMC HEM . . . V 11 139.558 137.082 141.428 1 25.95 ? CMC HEM 502 C 1 HETATM 27 C CAC HEM . . . V 11 138.072 136.699 144.277 1 27.24 ? CAC HEM 502 C 1 HETATM 28 C CBC HEM . . . V 11 137.087 136.611 143.376 1 27.24 ? CBC HEM 502 C 1 HETATM 29 C C1D HEM . . . V 11 141.016 136.515 147.348 1 25.62 ? C1D HEM 502 C 1 HETATM 30 C C2D HEM . . . V 11 140.613 136.2 148.718 1 26.29 ? C2D HEM 502 C 1 HETATM 31 C C3D HEM . . . V 11 141.761 135.936 149.362 1 27.56 ? C3D HEM 502 C 1 HETATM 32 C C4D HEM . . . V 11 142.851 136.09 148.39 1 26.12 ? C4D HEM 502 C 1 HETATM 33 C CMD HEM . . . V 11 139.22 136.178 149.343 1 25.01 ? CMD HEM 502 C 1 HETATM 34 C CAD HEM . . . V 11 141.879 135.55 150.817 1 28.86 ? CAD HEM 502 C 1 HETATM 35 C CBD HEM . . . V 11 141.867 134.025 150.807 1 32.44 ? CBD HEM 502 C 1 HETATM 36 C CGD HEM . . . V 11 142.344 133.497 152.129 1 36.35 ? CGD HEM 502 C 1 HETATM 37 O O1D HEM . . . V 11 141.515 132.947 152.85 1 36.93 ? O1D HEM 502 C 1 HETATM 38 O O2D HEM . . . V 11 143.568 133.534 152.436 1 43.21 ? O2D HEM 502 C 1 HETATM 39 N NA HEM . . . V 11 145.097 136.5 146.521 1 26.18 ? NA HEM 502 C 1 HETATM 40 N NB HEM . . . V 11 144.438 137.212 143.829 1 25.78 ? NB HEM 502 C 1 HETATM 41 N NC HEM . . . V 11 141.656 137.081 144.494 1 25.52 ? NC HEM 502 C 1 HETATM 42 N ND HEM . . . V 11 142.358 136.443 147.182 1 25.86 ? ND HEM 502 C 1 HETATM 43 FE FE HEM . . . V 11 143.373 136.736 145.594 1 25.58 ? FE HEM 502 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #