data_8ABG # _model_server_result.job_id 4dJ0QCxpMOjgOZgRRKNBWQ _model_server_result.datetime_utc '2024-10-11 11:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":503}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 JA N N ? 12 NA N N ? 12 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . NA 12 163.997 182.694 152.459 1 36.75 ? O12 PC1 503 N 1 HETATM 2 P P PC1 . . . NA 12 162.499 182.809 152.513 1 35.91 ? P PC1 503 N 1 HETATM 3 O O14 PC1 . . . NA 12 161.658 181.611 152.84 1 37.1 ? O14 PC1 503 N 1 HETATM 4 O O13 PC1 . . . NA 12 162.141 184.044 153.479 1 38.71 ? O13 PC1 503 N 1 HETATM 5 C C11 PC1 . . . NA 12 160.768 184.311 153.9 1 39 ? C11 PC1 503 N 1 HETATM 6 C C12 PC1 . . . NA 12 160.821 185.583 154.716 1 44.57 ? C12 PC1 503 N 1 HETATM 7 N N PC1 . . . NA 12 161.6 185.579 156.027 1 47.13 ? N PC1 503 N 1 HETATM 8 C C13 PC1 . . . NA 12 163.074 185.642 155.789 1 44.37 ? C13 PC1 503 N 1 HETATM 9 C C14 PC1 . . . NA 12 161.205 186.781 156.823 1 45.21 ? C14 PC1 503 N 1 HETATM 10 C C15 PC1 . . . NA 12 161.3 184.359 156.837 1 44.53 ? C15 PC1 503 N 1 HETATM 11 O O11 PC1 . . . NA 12 161.945 183.228 151.073 1 39.87 ? O11 PC1 503 N 1 HETATM 12 C C1 PC1 . . . NA 12 162.697 184.125 150.253 1 45.45 ? C1 PC1 503 N 1 HETATM 13 C C2 PC1 . . . NA 12 162.166 183.804 148.882 1 51.42 ? C2 PC1 503 N 1 HETATM 14 O O21 PC1 . . . NA 12 162.776 182.53 148.506 1 52.54 ? O21 PC1 503 N 1 HETATM 15 C C21 PC1 . . . NA 12 162.04 181.495 148.041 1 54.38 ? C21 PC1 503 N 1 HETATM 16 O O22 PC1 . . . NA 12 160.86 181.475 148.305 1 54.76 ? O22 PC1 503 N 1 HETATM 17 C C22 PC1 . . . NA 12 163.037 180.534 147.308 1 51.54 ? C22 PC1 503 N 1 HETATM 18 C C23 PC1 . . . NA 12 162.574 179.253 146.574 1 48.65 ? C23 PC1 503 N 1 HETATM 19 C C24 PC1 . . . NA 12 163.59 178.782 145.483 1 46.79 ? C24 PC1 503 N 1 HETATM 20 C C25 PC1 . . . NA 12 163.066 178.314 144.082 1 47.76 ? C25 PC1 503 N 1 HETATM 21 C C26 PC1 . . . NA 12 164.096 178.391 142.885 1 47.85 ? C26 PC1 503 N 1 HETATM 22 C C27 PC1 . . . NA 12 163.657 177.88 141.477 1 47.46 ? C27 PC1 503 N 1 HETATM 23 C C28 PC1 . . . NA 12 164.807 177.694 140.406 1 48.46 ? C28 PC1 503 N 1 HETATM 24 C C29 PC1 . . . NA 12 164.85 176.341 139.588 1 51.4 ? C29 PC1 503 N 1 HETATM 25 C C2A PC1 . . . NA 12 166.241 175.699 139.131 1 50.73 ? C2A PC1 503 N 1 HETATM 26 C C2B PC1 . . . NA 12 166.508 174.267 139.684 1 52.3 ? C2B PC1 503 N 1 HETATM 27 C C2C PC1 . . . NA 12 167.856 173.591 139.478 1 49.85 ? C2C PC1 503 N 1 HETATM 28 C C3 PC1 . . . NA 12 162.519 184.878 147.882 1 56.25 ? C3 PC1 503 N 1 HETATM 29 O O31 PC1 . . . NA 12 163.741 184.504 147.199 1 62.95 ? O31 PC1 503 N 1 HETATM 30 C C31 PC1 . . . NA 12 164.855 185.194 147.459 1 65.74 ? C31 PC1 503 N 1 HETATM 31 O O32 PC1 . . . NA 12 164.902 186.394 147.431 1 67.8 ? O32 PC1 503 N 1 HETATM 32 C C32 PC1 . . . NA 12 166.041 184.285 147.778 1 66.06 ? C32 PC1 503 N 1 HETATM 33 C C33 PC1 . . . NA 12 167.024 184.071 146.651 1 65.8 ? C33 PC1 503 N 1 HETATM 34 C C34 PC1 . . . NA 12 166.447 183.325 145.441 1 66.18 ? C34 PC1 503 N 1 HETATM 35 C C35 PC1 . . . NA 12 167.366 183.306 144.227 1 66.51 ? C35 PC1 503 N 1 HETATM 36 C C36 PC1 . . . NA 12 166.698 183.262 142.846 1 69.59 ? C36 PC1 503 N 1 HETATM 37 C C37 PC1 . . . NA 12 167.643 183.546 141.675 1 73.05 ? C37 PC1 503 N 1 HETATM 38 C C38 PC1 . . . NA 12 167 183.599 140.293 1 76.71 ? C38 PC1 503 N 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #