data_8ABG # _model_server_result.job_id 2voCssaea4AkfrT4wy9iCw _model_server_result.datetime_utc '2024-10-11 11:17:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":506}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 BA N N ? 15 KA N N ? 15 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . Z 15 152.213 145.502 160.461 1 114.67 ? C1B LMT 506 C 1 HETATM 2 C C2B LMT . . . Z 15 151.566 145.422 161.843 1 115.72 ? C2B LMT 506 C 1 HETATM 3 C C3B LMT . . . Z 15 152.18 146.45 162.808 1 118.4 ? C3B LMT 506 C 1 HETATM 4 C C4B LMT . . . Z 15 153.717 146.511 162.805 1 120.83 ? C4B LMT 506 C 1 HETATM 5 C C5B LMT . . . Z 15 154.38 146.207 161.441 1 119.9 ? C5B LMT 506 C 1 HETATM 6 C C6B LMT . . . Z 15 155.774 145.576 161.568 1 122.61 ? C6B LMT 506 C 1 HETATM 7 O O1B LMT . . . Z 15 151.89 146.773 159.869 1 114.48 ? O1B LMT 506 C 1 HETATM 8 O O2B LMT . . . Z 15 150.162 145.64 161.661 1 114.27 ? O2B LMT 506 C 1 HETATM 9 O O3B LMT . . . Z 15 151.732 146.221 164.15 1 118.39 ? O3B LMT 506 C 1 HETATM 10 O O4' LMT . . . Z 15 154.055 147.842 163.222 1 125.57 ? O4' LMT 506 C 1 HETATM 11 O O5B LMT . . . Z 15 153.626 145.339 160.571 1 116.3 ? O5B LMT 506 C 1 HETATM 12 O O6B LMT . . . Z 15 156.051 144.702 160.457 1 120.36 ? O6B LMT 506 C 1 HETATM 13 C C1' LMT . . . Z 15 150.875 148.044 156.044 1 105.72 ? C1' LMT 506 C 1 HETATM 14 C C2' LMT . . . Z 15 150.277 146.722 156.514 1 106.45 ? C2' LMT 506 C 1 HETATM 15 C C3' LMT . . . Z 15 150.371 146.652 158.027 1 108.95 ? C3' LMT 506 C 1 HETATM 16 C C4' LMT . . . Z 15 151.835 146.798 158.447 1 108.51 ? C4' LMT 506 C 1 HETATM 17 C C5' LMT . . . Z 15 152.413 148.125 157.916 1 107.94 ? C5' LMT 506 C 1 HETATM 18 C C6' LMT . . . Z 15 153.921 148.253 158.083 1 109.59 ? C6' LMT 506 C 1 HETATM 19 O O1' LMT . . . Z 15 150.921 147.984 154.636 1 100.76 ? O1' LMT 506 C 1 HETATM 20 O O2' LMT . . . Z 15 148.916 146.747 156.095 1 104.35 ? O2' LMT 506 C 1 HETATM 21 O O3' LMT . . . Z 15 149.813 145.419 158.496 1 109.93 ? O3' LMT 506 C 1 HETATM 22 O O5' LMT . . . Z 15 152.206 148.239 156.507 1 106.2 ? O5' LMT 506 C 1 HETATM 23 O O6' LMT . . . Z 15 154.61 148.145 156.815 1 112.93 ? O6' LMT 506 C 1 HETATM 24 C C1 LMT . . . Z 15 150.583 149.213 154.016 1 90.79 ? C1 LMT 506 C 1 HETATM 25 C C2 LMT . . . Z 15 150.405 148.825 152.563 1 86.37 ? C2 LMT 506 C 1 HETATM 26 C C3 LMT . . . Z 15 151.71 149.068 151.814 1 86.61 ? C3 LMT 506 C 1 HETATM 27 C C4 LMT . . . Z 15 152.425 147.76 151.516 1 86.39 ? C4 LMT 506 C 1 HETATM 28 C C5 LMT . . . Z 15 151.85 147.104 150.282 1 87.32 ? C5 LMT 506 C 1 HETATM 29 C C6 LMT . . . Z 15 153.022 146.832 149.371 1 91.98 ? C6 LMT 506 C 1 HETATM 30 C C7 LMT . . . Z 15 153.211 145.329 149.351 1 94.42 ? C7 LMT 506 C 1 HETATM 31 C C8 LMT . . . Z 15 154.604 145.105 149.887 1 98.1 ? C8 LMT 506 C 1 HETATM 32 C C9 LMT . . . Z 15 155.512 144.713 148.726 1 102.38 ? C9 LMT 506 C 1 HETATM 33 C C10 LMT . . . Z 15 155.692 143.203 148.705 1 108.3 ? C10 LMT 506 C 1 HETATM 34 C C11 LMT . . . Z 15 154.848 142.55 147.607 1 112.66 ? C11 LMT 506 C 1 HETATM 35 C C12 LMT . . . Z 15 153.568 141.896 148.103 1 113.51 ? C12 LMT 506 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 203 _model_server_stats.query_time_ms 525 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #