data_8ABG # _model_server_result.job_id Rbb-G1wKVzQ6LMgZz4fN2A _model_server_result.datetime_utc '2024-10-11 11:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":701}' # _entry.id 8ABG # _exptl.entry_id 8ABG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 PA N N ? 14 SA N N ? 14 TA N N ? 14 VA N N ? 14 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 AA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 AA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 UA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8ABG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 16 FES P 1 301 301 FES FES . BA 15 LMT P 1 302 502 LMT LMT . CA 13 PTY P 1 303 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 18 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 101 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 15 LMT J 1 101 102 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 601 PC1 PC1 . OA 13 PTY N 1 504 801 PTY PTY . PA 14 CDL N 1 505 901 CDL CDL . QA 15 LMT N 1 506 903 LMT LMT . RA 13 PTY E 1 401 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 18 HEC O 1 401 401 HEC HEC . VA 14 CDL S 1 701 701 CDL CDL . WA 14 CDL S 1 702 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 17 XP4 U 1 101 101 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . VA 14 158.381 183.276 149.791 1 53.78 ? C1 CDL 701 S 1 HETATM 2 O O1 CDL . . . VA 14 159.123 182.364 150.586 1 62.91 ? O1 CDL 701 S 1 HETATM 3 C CA2 CDL . . . VA 14 158.262 184.509 150.639 1 51.4 ? CA2 CDL 701 S 1 HETATM 4 O OA2 CDL . . . VA 14 159.334 185.38 150.253 1 47.26 ? OA2 CDL 701 S 1 HETATM 5 P PA1 CDL . . . VA 14 159.44 186.771 151.045 1 42.35 ? PA1 CDL 701 S 1 HETATM 6 O OA3 CDL . . . VA 14 160.823 187.112 151.522 1 44.67 ? OA3 CDL 701 S 1 HETATM 7 O OA4 CDL . . . VA 14 158.324 186.844 152.046 1 44.99 ? OA4 CDL 701 S 1 HETATM 8 O OA5 CDL . . . VA 14 158.997 187.753 149.864 1 46.59 ? OA5 CDL 701 S 1 HETATM 9 C CA3 CDL . . . VA 14 159.879 187.953 148.724 1 49.2 ? CA3 CDL 701 S 1 HETATM 10 C CA4 CDL . . . VA 14 159.065 188.298 147.493 1 55.41 ? CA4 CDL 701 S 1 HETATM 11 O OA6 CDL . . . VA 14 159.731 189.181 146.53 1 60.36 ? OA6 CDL 701 S 1 HETATM 12 C CA5 CDL . . . VA 14 160.836 188.776 145.865 1 66.11 ? CA5 CDL 701 S 1 HETATM 13 O OA7 CDL . . . VA 14 161.632 187.987 146.295 1 71.64 ? OA7 CDL 701 S 1 HETATM 14 C C11 CDL . . . VA 14 161.061 189.462 144.543 1 71.65 ? C11 CDL 701 S 1 HETATM 15 C C12 CDL . . . VA 14 162.512 189.673 144.245 1 74.39 ? C12 CDL 701 S 1 HETATM 16 C C13 CDL . . . VA 14 162.843 191.121 143.897 1 77.8 ? C13 CDL 701 S 1 HETATM 17 C C14 CDL . . . VA 14 162.932 191.426 142.408 1 81.14 ? C14 CDL 701 S 1 HETATM 18 C C15 CDL . . . VA 14 163.272 192.871 142.057 1 82.13 ? C15 CDL 701 S 1 HETATM 19 C CA6 CDL . . . VA 14 157.758 188.962 147.821 1 58.28 ? CA6 CDL 701 S 1 HETATM 20 O OA8 CDL . . . VA 14 156.75 187.941 147.699 1 63.74 ? OA8 CDL 701 S 1 HETATM 21 C CA7 CDL . . . VA 14 155.513 188.371 147.512 1 69.11 ? CA7 CDL 701 S 1 HETATM 22 O OA9 CDL . . . VA 14 154.639 187.689 147.047 1 70.98 ? OA9 CDL 701 S 1 HETATM 23 C C31 CDL . . . VA 14 155.364 189.793 147.96 1 71.66 ? C31 CDL 701 S 1 HETATM 24 C CB2 CDL . . . VA 14 157.068 182.618 149.459 1 52.42 ? CB2 CDL 701 S 1 HETATM 25 O OB2 CDL . . . VA 14 156.015 183.52 149.811 1 48.5 ? OB2 CDL 701 S 1 HETATM 26 P PB2 CDL . . . VA 14 154.539 183.179 149.306 1 42.5 ? PB2 CDL 701 S 1 HETATM 27 O OB3 CDL . . . VA 14 153.716 184.411 149.522 1 47.98 ? OB3 CDL 701 S 1 HETATM 28 O OB4 CDL . . . VA 14 154.087 181.86 149.862 1 48.04 ? OB4 CDL 701 S 1 HETATM 29 O OB5 CDL . . . VA 14 154.723 182.838 147.752 1 49.42 ? OB5 CDL 701 S 1 HETATM 30 C CB3 CDL . . . VA 14 154.671 183.877 146.77 1 55.1 ? CB3 CDL 701 S 1 HETATM 31 C CB4 CDL . . . VA 14 155.558 183.332 145.678 1 62.01 ? CB4 CDL 701 S 1 HETATM 32 O OB6 CDL . . . VA 14 156.306 184.468 145.173 1 70.36 ? OB6 CDL 701 S 1 HETATM 33 C CB5 CDL . . . VA 14 157.51 184.715 145.717 1 81.03 ? CB5 CDL 701 S 1 HETATM 34 O OB7 CDL . . . VA 14 157.665 185.091 146.861 1 85.84 ? OB7 CDL 701 S 1 HETATM 35 C C51 CDL . . . VA 14 158.586 184.468 144.689 1 83.31 ? C51 CDL 701 S 1 HETATM 36 C C52 CDL . . . VA 14 159.976 184.768 145.165 1 87.59 ? C52 CDL 701 S 1 HETATM 37 C C53 CDL . . . VA 14 161.04 184.083 144.32 1 93.32 ? C53 CDL 701 S 1 HETATM 38 C C54 CDL . . . VA 14 162.223 184.954 143.973 1 91.06 ? C54 CDL 701 S 1 HETATM 39 C CB6 CDL . . . VA 14 154.813 182.563 144.608 1 65.62 ? CB6 CDL 701 S 1 HETATM 40 O OB8 CDL . . . VA 14 155.683 181.543 144.062 1 71.42 ? OB8 CDL 701 S 1 HETATM 41 C CB7 CDL . . . VA 14 155.196 180.304 143.942 1 77.17 ? CB7 CDL 701 S 1 HETATM 42 O OB9 CDL . . . VA 14 155.728 179.325 144.402 1 80.7 ? OB9 CDL 701 S 1 HETATM 43 C C71 CDL . . . VA 14 153.952 180.249 143.097 1 78.29 ? C71 CDL 701 S 1 HETATM 44 C C72 CDL . . . VA 14 154.218 179.752 141.713 1 78.27 ? C72 CDL 701 S 1 HETATM 45 C C73 CDL . . . VA 14 153.144 178.805 141.219 1 77.45 ? C73 CDL 701 S 1 HETATM 46 C C74 CDL . . . VA 14 152.564 179.198 139.886 1 75.56 ? C74 CDL 701 S 1 HETATM 47 C C75 CDL . . . VA 14 151.946 178.062 139.123 1 71.9 ? C75 CDL 701 S 1 HETATM 48 C C76 CDL . . . VA 14 152.125 178.153 137.631 1 74.69 ? C76 CDL 701 S 1 HETATM 49 C C77 CDL . . . VA 14 152.906 177.009 137.03 1 78.97 ? C77 CDL 701 S 1 HETATM 50 C C78 CDL . . . VA 14 154.338 177.351 136.693 1 80.34 ? C78 CDL 701 S 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #