data_8ABK
#
_model_server_result.job_id            AdN2m7SGjvJhwADa8Va3VQ 
_model_server_result.datetime_utc      '2025-03-30 16:43:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8abk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":101}' 
#
_entry.id    8ABK 
#
_exptl.entry_id    8ABK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ABK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ABK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 AA N N 
? 16 KA N N 
? 16 SA N N 
? 16 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 670 n n 
C1B O1B LMT sing 671 n n 
C1B O5B LMT sing 672 n n 
C1B H1B LMT sing 673 n n 
C2B C3B LMT sing 674 n n 
C2B O2B LMT sing 675 n n 
C2B H2B LMT sing 676 n n 
C3B C4B LMT sing 677 n n 
C3B O3B LMT sing 678 n n 
C3B H3B LMT sing 679 n n 
C4B C5B LMT sing 680 n n 
C4B O4' LMT sing 681 n n 
C4B H4B LMT sing 682 n n 
C5B C6B LMT sing 683 n n 
C5B O5B LMT sing 684 n n 
C5B H5B LMT sing 685 n n 
C6B O6B LMT sing 686 n n 
C6B "H6'2" LMT sing 687 n n 
C6B "H6'1" LMT sing 688 n n 
O1B C4' LMT sing 689 n n 
O2B H2O1 LMT sing 690 n n 
O3B H3O1 LMT sing 691 n n 
O4' H4O1 LMT sing 692 n n 
O6B H6B LMT sing 693 n n 
C1' C2' LMT sing 694 n n 
C1' O1' LMT sing 695 n n 
C1' O5' LMT sing 696 n n 
C1' H1' LMT sing 697 n n 
C2' C3' LMT sing 698 n n 
C2' O2' LMT sing 699 n n 
C2' H2' LMT sing 700 n n 
C3' C4' LMT sing 701 n n 
C3' O3' LMT sing 702 n n 
C3' H3' LMT sing 703 n n 
C4' C5' LMT sing 704 n n 
C4' H4' LMT sing 705 n n 
C5' C6' LMT sing 706 n n 
C5' O5' LMT sing 707 n n 
C5' H5' LMT sing 708 n n 
C6' O6' LMT sing 709 n n 
C6' H6D LMT sing 710 n n 
C6' H6E LMT sing 711 n n 
O1' C1 LMT sing 712 n n 
O2' H2O2 LMT sing 713 n n 
O3' H3O2 LMT sing 714 n n 
O6' H6' LMT sing 715 n n 
C1 C2 LMT sing 716 n n 
C1 H12 LMT sing 717 n n 
C1 H11 LMT sing 718 n n 
C2 C3 LMT sing 719 n n 
C2 H22 LMT sing 720 n n 
C2 H21 LMT sing 721 n n 
C3 C4 LMT sing 722 n n 
C3 H32 LMT sing 723 n n 
C3 H31 LMT sing 724 n n 
C4 C5 LMT sing 725 n n 
C4 H42 LMT sing 726 n n 
C4 H41 LMT sing 727 n n 
C5 C6 LMT sing 728 n n 
C5 H52 LMT sing 729 n n 
C5 H51 LMT sing 730 n n 
C6 C7 LMT sing 731 n n 
C6 H62 LMT sing 732 n n 
C6 H61 LMT sing 733 n n 
C7 C8 LMT sing 734 n n 
C7 H72 LMT sing 735 n n 
C7 H71 LMT sing 736 n n 
C8 C9 LMT sing 737 n n 
C8 H82 LMT sing 738 n n 
C8 H81 LMT sing 739 n n 
C9 C10 LMT sing 740 n n 
C9 H92 LMT sing 741 n n 
C9 H91 LMT sing 742 n n 
C10 C11 LMT sing 743 n n 
C10 H102 LMT sing 744 n n 
C10 H101 LMT sing 745 n n 
C11 C12 LMT sing 746 n n 
C11 H112 LMT sing 747 n n 
C11 H111 LMT sing 748 n n 
C12 H123 LMT sing 749 n n 
C12 H122 LMT sing 750 n n 
C12 H121 LMT sing 751 n n 
#
_atom_sites.entry_id                     8ABK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 HEM C 1 501 501 HEM HEM . 
V 11 HEM C 1 502 502 HEM HEM . 
W 12 PC1 C 1 503 503 PC1 PC1 . 
X 13 PTY C 1 504 504 PTY PTY . 
Y 14 CDL C 1 505 505 CDL CDL . 
Z 15 DCQ C 1 506 506 DCQ DCQ . 
AA 16 LMT C 1 507 507 LMT LMT . 
BA 17 FES P 1 301 301 FES FES . 
CA 13 PTY P 1 302 302 PTY PTY . 
DA 14 CDL A 1 3001 3001 CDL CDL . 
EA 14 CDL A 1 3002 3002 CDL CDL . 
FA 18 XP4 A 1 3003 3003 XP4 XP4 . 
GA 19 HEC D 1 401 401 HEC HEC . 
HA 14 CDL H 1 701 701 CDL CDL . 
IA 14 CDL H 1 702 702 CDL CDL . 
JA 12 PC1 I 1 201 201 PC1 PC1 . 
KA 16 LMT J 1 101 101 LMT LMT . 
LA 11 HEM N 1 501 501 HEM HEM . 
MA 11 HEM N 1 502 502 HEM HEM . 
NA 12 PC1 N 1 503 503 PC1 PC1 . 
OA 14 CDL N 1 504 504 CDL CDL . 
PA 13 PTY N 1 505 505 PTY PTY . 
QA 14 CDL N 1 506 506 CDL CDL . 
RA 15 DCQ N 1 507 507 DCQ DCQ . 
SA 16 LMT N 1 508 508 LMT LMT . 
TA 13 PTY E 1 401 401 PTY PTY . 
UA 14 CDL L 1 3001 3001 CDL CDL . 
VA 14 CDL L 1 3002 3002 CDL CDL . 
WA 18 XP4 L 1 3003 3003 XP4 XP4 . 
XA 19 HEC O 1 401 401 HEC HEC . 
YA 14 CDL S 1 101 101 CDL CDL . 
ZA 12 PC1 T 1 201 201 PC1 PC1 . 
AB 16 LMT U 1 101 101 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . KA 16 172.28 129.519 120.006 1 113.25 ? C1B LMT 101 J 1 
HETATM 2 C C2B LMT . . . KA 16 172.64 128.929 118.638 1 120.74 ? C2B LMT 101 J 1 
HETATM 3 C C3B LMT . . . KA 16 171.518 129.251 117.623 1 125.73 ? C3B LMT 101 J 1 
HETATM 4 C C4B LMT . . . KA 16 170.1 128.882 118.11 1 126.4 ? C4B LMT 101 J 1 
HETATM 5 C C5B LMT . . . KA 16 169.876 129.38 119.545 1 124.79 ? C5B LMT 101 J 1 
HETATM 6 C C6B LMT . . . KA 16 168.572 128.849 120.139 1 128.06 ? C6B LMT 101 J 1 
HETATM 7 O O1B LMT . . . KA 16 172.263 130.94 119.826 1 100.15 ? O1B LMT 101 J 1 
HETATM 8 O O2B LMT . . . KA 16 173.869 129.498 118.171 1 121.29 ? O2B LMT 101 J 1 
HETATM 9 O O3B LMT . . . KA 16 171.787 128.657 116.349 1 127.6 ? O3B LMT 101 J 1 
HETATM 10 O O4' LMT . . . KA 16 169.128 129.448 117.21 1 126.82 ? O4' LMT 101 J 1 
HETATM 11 O O5B LMT . . . KA 16 170.986 129.022 120.407 1 119.45 ? O5B LMT 101 J 1 
HETATM 12 O O6B LMT . . . KA 16 168.774 128.749 121.549 1 130.43 ? O6B LMT 101 J 1 
HETATM 13 C C1' LMT . . . KA 16 173.2 134.452 121.468 1 79.33 ? C1' LMT 101 J 1 
HETATM 14 C C2' LMT . . . KA 16 174.405 133.538 121.36 1 82.71 ? C2' LMT 101 J 1 
HETATM 15 C C3' LMT . . . KA 16 174.011 132.35 120.513 1 88.88 ? C3' LMT 101 J 1 
HETATM 16 C C4' LMT . . . KA 16 172.67 131.744 120.939 1 90.44 ? C4' LMT 101 J 1 
HETATM 17 C C5' LMT . . . KA 16 171.579 132.763 121.332 1 83.85 ? C5' LMT 101 J 1 
HETATM 18 C C6' LMT . . . KA 16 170.56 132.111 122.248 1 83.65 ? C6' LMT 101 J 1 
HETATM 19 O O1' LMT . . . KA 16 173.43 135.488 122.345 1 75.31 ? O1' LMT 101 J 1 
HETATM 20 O O2' LMT . . . KA 16 175.513 134.197 120.729 1 84.09 ? O2' LMT 101 J 1 
HETATM 21 O O3' LMT . . . KA 16 175.023 131.346 120.632 1 90.41 ? O3' LMT 101 J 1 
HETATM 22 O O5' LMT . . . KA 16 172.105 133.822 122.11 1 81.45 ? O5' LMT 101 J 1 
HETATM 23 O O6' LMT . . . KA 16 169.863 133.117 122.991 1 85.46 ? O6' LMT 101 J 1 
HETATM 24 C C1 LMT . . . KA 16 172.393 136.413 122.063 1 79.69 ? C1 LMT 101 J 1 
HETATM 25 C C2 LMT . . . KA 16 171.967 136.961 123.389 1 72.58 ? C2 LMT 101 J 1 
HETATM 26 C C3 LMT . . . KA 16 173.289 137.061 124.104 1 76.63 ? C3 LMT 101 J 1 
HETATM 27 C C4 LMT . . . KA 16 173.193 138.082 125.215 1 74.93 ? C4 LMT 101 J 1 
HETATM 28 C C5 LMT . . . KA 16 172.157 139.195 125.035 1 66.96 ? C5 LMT 101 J 1 
HETATM 29 C C6 LMT . . . KA 16 171.914 140.01 126.329 1 68.53 ? C6 LMT 101 J 1 
HETATM 30 C C7 LMT . . . KA 16 173.004 139.913 127.403 1 76.01 ? C7 LMT 101 J 1 
HETATM 31 C C8 LMT . . . KA 16 172.477 140.233 128.802 1 84.41 ? C8 LMT 101 J 1 
HETATM 32 C C9 LMT . . . KA 16 173.321 141.315 129.463 1 95.22 ? C9 LMT 101 J 1 
HETATM 33 C C10 LMT . . . KA 16 173.781 140.934 130.871 1 110.75 ? C10 LMT 101 J 1 
HETATM 34 C C11 LMT . . . KA 16 172.634 140.792 131.872 1 123.46 ? C11 LMT 101 J 1 
HETATM 35 C C12 LMT . . . KA 16 172.688 141.883 132.918 1 133.07 ? C12 LMT 101 J 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    96 
_model_server_stats.query_time_ms           596 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#