data_8ABK # _model_server_result.job_id WTfVQHz3Ui_usysI9E0_KQ _model_server_result.datetime_utc '2025-09-11 23:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":201}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 JA N N ? 12 NA N N ? 12 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 795 n n P O14 PC1 doub 796 n n P O13 PC1 sing 797 n n P O11 PC1 sing 798 n n O13 C11 PC1 sing 799 n n C11 C12 PC1 sing 800 n n C11 H111 PC1 sing 801 n n C11 H112 PC1 sing 802 n n C12 N PC1 sing 803 n n C12 H121 PC1 sing 804 n n C12 H122 PC1 sing 805 n n N C13 PC1 sing 806 n n N C14 PC1 sing 807 n n N C15 PC1 sing 808 n n C13 H131 PC1 sing 809 n n C13 H132 PC1 sing 810 n n C13 H133 PC1 sing 811 n n C14 H141 PC1 sing 812 n n C14 H142 PC1 sing 813 n n C14 H143 PC1 sing 814 n n C15 H151 PC1 sing 815 n n C15 H152 PC1 sing 816 n n C15 H153 PC1 sing 817 n n O11 C1 PC1 sing 818 n n C1 C2 PC1 sing 819 n n C1 H11 PC1 sing 820 n n C1 H12 PC1 sing 821 n n C2 O21 PC1 sing 822 n n C2 C3 PC1 sing 823 n n C2 H2 PC1 sing 824 n n O21 C21 PC1 sing 825 n n C21 O22 PC1 doub 826 n n C21 C22 PC1 sing 827 n n C22 C23 PC1 sing 828 n n C22 H221 PC1 sing 829 n n C22 H222 PC1 sing 830 n n C23 C24 PC1 sing 831 n n C23 H231 PC1 sing 832 n n C23 H232 PC1 sing 833 n n C24 C25 PC1 sing 834 n n C24 H241 PC1 sing 835 n n C24 H242 PC1 sing 836 n n C25 C26 PC1 sing 837 n n C25 H251 PC1 sing 838 n n C25 H252 PC1 sing 839 n n C26 C27 PC1 sing 840 n n C26 H261 PC1 sing 841 n n C26 H262 PC1 sing 842 n n C27 C28 PC1 sing 843 n n C27 H271 PC1 sing 844 n n C27 H272 PC1 sing 845 n n C28 C29 PC1 sing 846 n n C28 H281 PC1 sing 847 n n C28 H282 PC1 sing 848 n n C29 C2A PC1 sing 849 n n C29 H291 PC1 sing 850 n n C29 H292 PC1 sing 851 n n C2A C2B PC1 sing 852 n n C2A H2A1 PC1 sing 853 n n C2A H2A2 PC1 sing 854 n n C2B C2C PC1 sing 855 n n C2B H2B1 PC1 sing 856 n n C2B H2B2 PC1 sing 857 n n C2C C2D PC1 sing 858 n n C2C H2C1 PC1 sing 859 n n C2C H2C2 PC1 sing 860 n n C2D C2E PC1 sing 861 n n C2D H2D1 PC1 sing 862 n n C2D H2D2 PC1 sing 863 n n C2E C2F PC1 sing 864 n n C2E H2E1 PC1 sing 865 n n C2E H2E2 PC1 sing 866 n n C2F C2G PC1 sing 867 n n C2F H2F1 PC1 sing 868 n n C2F H2F2 PC1 sing 869 n n C2G C2H PC1 sing 870 n n C2G H2G1 PC1 sing 871 n n C2G H2G2 PC1 sing 872 n n C2H C2I PC1 sing 873 n n C2H H2H1 PC1 sing 874 n n C2H H2H2 PC1 sing 875 n n C2I H2I1 PC1 sing 876 n n C2I H2I2 PC1 sing 877 n n C2I H2I3 PC1 sing 878 n n C3 O31 PC1 sing 879 n n C3 H31 PC1 sing 880 n n C3 H32 PC1 sing 881 n n O31 C31 PC1 sing 882 n n C31 O32 PC1 doub 883 n n C31 C32 PC1 sing 884 n n C32 C33 PC1 sing 885 n n C32 H321 PC1 sing 886 n n C32 H322 PC1 sing 887 n n C33 C34 PC1 sing 888 n n C33 H331 PC1 sing 889 n n C33 H332 PC1 sing 890 n n C34 C35 PC1 sing 891 n n C34 H341 PC1 sing 892 n n C34 H342 PC1 sing 893 n n C35 C36 PC1 sing 894 n n C35 H351 PC1 sing 895 n n C35 H352 PC1 sing 896 n n C36 C37 PC1 sing 897 n n C36 H361 PC1 sing 898 n n C36 H362 PC1 sing 899 n n C37 C38 PC1 sing 900 n n C37 H371 PC1 sing 901 n n C37 H372 PC1 sing 902 n n C38 C39 PC1 sing 903 n n C38 H381 PC1 sing 904 n n C38 H382 PC1 sing 905 n n C39 C3A PC1 sing 906 n n C39 H391 PC1 sing 907 n n C39 H392 PC1 sing 908 n n C3A C3B PC1 sing 909 n n C3A H3A1 PC1 sing 910 n n C3A H3A2 PC1 sing 911 n n C3B C3C PC1 sing 912 n n C3B H3B1 PC1 sing 913 n n C3B H3B2 PC1 sing 914 n n C3C C3D PC1 sing 915 n n C3C H3C1 PC1 sing 916 n n C3C H3C2 PC1 sing 917 n n C3D C3E PC1 sing 918 n n C3D H3D1 PC1 sing 919 n n C3D H3D2 PC1 sing 920 n n C3E C3F PC1 sing 921 n n C3E H3E1 PC1 sing 922 n n C3E H3E2 PC1 sing 923 n n C3F C3G PC1 sing 924 n n C3F H3F1 PC1 sing 925 n n C3F H3F2 PC1 sing 926 n n C3G C3H PC1 sing 927 n n C3G H3G1 PC1 sing 928 n n C3G H3G2 PC1 sing 929 n n C3H C3I PC1 sing 930 n n C3H H3H1 PC1 sing 931 n n C3H H3H2 PC1 sing 932 n n C3I H3I1 PC1 sing 933 n n C3I H3I2 PC1 sing 934 n n C3I H3I3 PC1 sing 935 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . JA 12 171.155 128.559 152.828 1 54.49 ? O12 PC1 201 I 1 HETATM 2 P P PC1 . . . JA 12 172.076 129.701 152.516 1 56.24 ? P PC1 201 I 1 HETATM 3 O O14 PC1 . . . JA 12 171.774 131.11 152.944 1 61.56 ? O14 PC1 201 I 1 HETATM 4 O O13 PC1 . . . JA 12 173.564 129.385 153.024 1 54.95 ? O13 PC1 201 I 1 HETATM 5 C C11 PC1 . . . JA 12 174.077 130.176 154.122 1 56.76 ? C11 PC1 201 I 1 HETATM 6 C C12 PC1 . . . JA 12 174.958 129.298 154.966 1 51.9 ? C12 PC1 201 I 1 HETATM 7 N N PC1 . . . JA 12 176.325 128.975 154.393 1 50.79 ? N PC1 201 I 1 HETATM 8 C C13 PC1 . . . JA 12 176.224 127.902 153.36 1 49.27 ? C13 PC1 201 I 1 HETATM 9 C C14 PC1 . . . JA 12 176.969 130.18 153.783 1 48.25 ? C14 PC1 201 I 1 HETATM 10 C C15 PC1 . . . JA 12 177.176 128.494 155.504 1 47.74 ? C15 PC1 201 I 1 HETATM 11 O O11 PC1 . . . JA 12 172.207 129.873 150.931 1 57.03 ? O11 PC1 201 I 1 HETATM 12 C C1 PC1 . . . JA 12 173.302 130.668 150.459 1 57.82 ? C1 PC1 201 I 1 HETATM 13 C C2 PC1 . . . JA 12 172.982 131.29 149.131 1 57.78 ? C2 PC1 201 I 1 HETATM 14 O O21 PC1 . . . JA 12 171.854 132.175 149.359 1 59.53 ? O21 PC1 201 I 1 HETATM 15 C C21 PC1 . . . JA 12 172.064 133.486 149.18 1 62.76 ? C21 PC1 201 I 1 HETATM 16 O O22 PC1 . . . JA 12 173.15 133.998 149.257 1 64.29 ? O22 PC1 201 I 1 HETATM 17 C C22 PC1 . . . JA 12 170.815 134.237 148.83 1 70.06 ? C22 PC1 201 I 1 HETATM 18 C C23 PC1 . . . JA 12 170.664 134.462 147.347 1 75.29 ? C23 PC1 201 I 1 HETATM 19 C C24 PC1 . . . JA 12 169.546 133.635 146.721 1 78.63 ? C24 PC1 201 I 1 HETATM 20 C C25 PC1 . . . JA 12 168.629 134.411 145.779 1 79.52 ? C25 PC1 201 I 1 HETATM 21 C C3 PC1 . . . JA 12 172.799 130.302 148.005 1 57.71 ? C3 PC1 201 I 1 HETATM 22 O O31 PC1 . . . JA 12 172.177 131.05 146.939 1 66.3 ? O31 PC1 201 I 1 HETATM 23 C C31 PC1 . . . JA 12 172.456 130.693 145.693 1 66.86 ? C31 PC1 201 I 1 HETATM 24 O O32 PC1 . . . JA 12 172.45 129.549 145.321 1 69.19 ? O32 PC1 201 I 1 HETATM 25 C C32 PC1 . . . JA 12 172.698 131.911 144.857 1 65.76 ? C32 PC1 201 I 1 HETATM 26 C C33 PC1 . . . JA 12 173.392 131.622 143.582 1 66.36 ? C33 PC1 201 I 1 HETATM 27 C C34 PC1 . . . JA 12 172.499 131.697 142.346 1 72.61 ? C34 PC1 201 I 1 HETATM 28 C C35 PC1 . . . JA 12 171.031 131.967 142.539 1 71.27 ? C35 PC1 201 I 1 HETATM 29 C C36 PC1 . . . JA 12 170.462 132.707 141.35 1 71.94 ? C36 PC1 201 I 1 HETATM 30 C C37 PC1 . . . JA 12 168.96 132.676 141.216 1 75.61 ? C37 PC1 201 I 1 HETATM 31 C C38 PC1 . . . JA 12 168.396 133.71 140.252 1 77.54 ? C38 PC1 201 I 1 HETATM 32 C C39 PC1 . . . JA 12 166.897 133.624 140.013 1 79.73 ? C39 PC1 201 I 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #