data_8ABK # _model_server_result.job_id XuWxW0oWf8TUpCBBQPYEFg _model_server_result.datetime_utc '2025-04-21 05:46:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":501}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 525 n n CHA C4D HEM doub 526 n n CHA HHA HEM sing 527 n n CHB C4A HEM sing 528 n n CHB C1B HEM doub 529 n n CHB HHB HEM sing 530 n n CHC C4B HEM sing 531 n n CHC C1C HEM doub 532 n n CHC HHC HEM sing 533 n n CHD C4C HEM doub 534 n n CHD C1D HEM sing 535 n n CHD HHD HEM sing 536 n n C1A C2A HEM doub 537 n y C1A NA HEM sing 538 n y C2A C3A HEM sing 539 n y C2A CAA HEM sing 540 n n C3A C4A HEM doub 541 n y C3A CMA HEM sing 542 n n C4A NA HEM sing 543 n y CMA HMA HEM sing 544 n n CMA HMAA HEM sing 545 n n CMA HMAB HEM sing 546 n n CAA CBA HEM sing 547 n n CAA HAA HEM sing 548 n n CAA HAAA HEM sing 549 n n CBA CGA HEM sing 550 n n CBA HBA HEM sing 551 n n CBA HBAA HEM sing 552 n n CGA O1A HEM doub 553 n n CGA O2A HEM sing 554 n n C1B C2B HEM sing 555 n n C1B NB HEM sing 556 n n C2B C3B HEM doub 557 n n C2B CMB HEM sing 558 n n C3B C4B HEM sing 559 n n C3B CAB HEM sing 560 n n C4B NB HEM doub 561 n n CMB HMB HEM sing 562 n n CMB HMBA HEM sing 563 n n CMB HMBB HEM sing 564 n n CAB CBB HEM doub 565 n n CAB HAB HEM sing 566 n n CBB HBB HEM sing 567 n n CBB HBBA HEM sing 568 n n C1C C2C HEM sing 569 n y C1C NC HEM sing 570 n y C2C C3C HEM doub 571 n y C2C CMC HEM sing 572 n n C3C C4C HEM sing 573 n y C3C CAC HEM sing 574 n n C4C NC HEM sing 575 n y CMC HMC HEM sing 576 n n CMC HMCA HEM sing 577 n n CMC HMCB HEM sing 578 n n CAC CBC HEM doub 579 n n CAC HAC HEM sing 580 n n CBC HBC HEM sing 581 n n CBC HBCA HEM sing 582 n n C1D C2D HEM sing 583 n n C1D ND HEM doub 584 n n C2D C3D HEM doub 585 n n C2D CMD HEM sing 586 n n C3D C4D HEM sing 587 n n C3D CAD HEM sing 588 n n C4D ND HEM sing 589 n n CMD HMD HEM sing 590 n n CMD HMDA HEM sing 591 n n CMD HMDB HEM sing 592 n n CAD CBD HEM sing 593 n n CAD HAD HEM sing 594 n n CAD HADA HEM sing 595 n n CBD CGD HEM sing 596 n n CBD HBD HEM sing 597 n n CBD HBDA HEM sing 598 n n CGD O1D HEM doub 599 n n CGD O2D HEM sing 600 n n O2A H2A HEM sing 601 n n O2D H2D HEM sing 602 n n FE NA HEM sing 603 n n FE NB HEM sing 604 n n FE NC HEM sing 605 n n FE ND HEM sing 606 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . LA 11 154.595 161.705 122.691 1 24.73 ? CHA HEM 501 N 1 HETATM 2 C CHB HEM . . . LA 11 156.261 163.019 127.074 1 27.26 ? CHB HEM 501 N 1 HETATM 3 C CHC HEM . . . LA 11 153.285 159.822 129.139 1 28.34 ? CHC HEM 501 N 1 HETATM 4 C CHD HEM . . . LA 11 151.985 158.147 124.797 1 26.7 ? CHD HEM 501 N 1 HETATM 5 C C1A HEM . . . LA 11 155.232 162.356 123.715 1 25.58 ? C1A HEM 501 N 1 HETATM 6 C C2A HEM . . . LA 11 156.153 163.411 123.519 1 27.21 ? C2A HEM 501 N 1 HETATM 7 C C3A HEM . . . LA 11 156.623 163.753 124.749 1 26.51 ? C3A HEM 501 N 1 HETATM 8 C C4A HEM . . . LA 11 156.024 162.92 125.711 1 26.65 ? C4A HEM 501 N 1 HETATM 9 C CMA HEM . . . LA 11 157.625 164.831 125.048 1 23.1 ? CMA HEM 501 N 1 HETATM 10 C CAA HEM . . . LA 11 156.572 164.114 122.24 1 30.15 ? CAA HEM 501 N 1 HETATM 11 C CBA HEM . . . LA 11 155.335 164.983 121.974 1 35.33 ? CBA HEM 501 N 1 HETATM 12 C CGA HEM . . . LA 11 155.269 165.708 120.656 1 38.84 ? CGA HEM 501 N 1 HETATM 13 O O1A HEM . . . LA 11 154.394 165.445 119.797 1 39.88 ? O1A HEM 501 N 1 HETATM 14 O O2A HEM . . . LA 11 156.081 166.629 120.417 1 41.81 ? O2A HEM 501 N 1 HETATM 15 C C1B HEM . . . LA 11 155.56 162.275 128.007 1 26.95 ? C1B HEM 501 N 1 HETATM 16 C C2B HEM . . . LA 11 155.744 162.445 129.419 1 27.94 ? C2B HEM 501 N 1 HETATM 17 C C3B HEM . . . LA 11 154.886 161.525 129.994 1 26.21 ? C3B HEM 501 N 1 HETATM 18 C C4B HEM . . . LA 11 154.221 160.832 128.905 1 27.32 ? C4B HEM 501 N 1 HETATM 19 C CMB HEM . . . LA 11 156.7 163.444 130.088 1 25.11 ? CMB HEM 501 N 1 HETATM 20 C CAB HEM . . . LA 11 154.577 161.159 131.38 1 26.89 ? CAB HEM 501 N 1 HETATM 21 C CBB HEM . . . LA 11 155.446 161.416 132.327 1 30.28 ? CBB HEM 501 N 1 HETATM 22 C C1C HEM . . . LA 11 152.749 159.058 128.119 1 28.56 ? C1C HEM 501 N 1 HETATM 23 C C2C HEM . . . LA 11 151.922 157.941 128.339 1 31.74 ? C2C HEM 501 N 1 HETATM 24 C C3C HEM . . . LA 11 151.533 157.45 127.128 1 31.39 ? C3C HEM 501 N 1 HETATM 25 C C4C HEM . . . LA 11 152.17 158.27 126.135 1 28.3 ? C4C HEM 501 N 1 HETATM 26 C CMC HEM . . . LA 11 151.504 157.355 129.661 1 32.13 ? CMC HEM 501 N 1 HETATM 27 C CAC HEM . . . LA 11 150.702 156.244 127.019 1 33.78 ? CAC HEM 501 N 1 HETATM 28 C CBC HEM . . . LA 11 150.946 155.634 125.881 1 39.73 ? CBC HEM 501 N 1 HETATM 29 C C1D HEM . . . LA 11 152.595 159.052 123.902 1 27.09 ? C1D HEM 501 N 1 HETATM 30 C C2D HEM . . . LA 11 152.366 158.934 122.437 1 26.49 ? C2D HEM 501 N 1 HETATM 31 C C3D HEM . . . LA 11 153.113 159.912 121.856 1 26.7 ? C3D HEM 501 N 1 HETATM 32 C C4D HEM . . . LA 11 153.77 160.629 122.966 1 24.88 ? C4D HEM 501 N 1 HETATM 33 C CMD HEM . . . LA 11 151.518 157.884 121.745 1 25.72 ? CMD HEM 501 N 1 HETATM 34 C CAD HEM . . . LA 11 153.299 160.19 120.379 1 27.85 ? CAD HEM 501 N 1 HETATM 35 C CBD HEM . . . LA 11 152.209 161.035 119.768 1 30.92 ? CBD HEM 501 N 1 HETATM 36 C CGD HEM . . . LA 11 152.63 162.473 119.919 1 33.95 ? CGD HEM 501 N 1 HETATM 37 O O1D HEM . . . LA 11 153.75 162.938 119.585 1 36.93 ? O1D HEM 501 N 1 HETATM 38 O O2D HEM . . . LA 11 151.836 163.232 120.467 1 36.45 ? O2D HEM 501 N 1 HETATM 39 N NA HEM . . . LA 11 155.182 162.076 125.074 1 26.58 ? NA HEM 501 N 1 HETATM 40 N NB HEM . . . LA 11 154.659 161.33 127.756 1 26.15 ? NB HEM 501 N 1 HETATM 41 N NC HEM . . . LA 11 152.877 159.246 126.797 1 26.9 ? NC HEM 501 N 1 HETATM 42 N ND HEM . . . LA 11 153.45 160.08 124.163 1 26 ? ND HEM 501 N 1 HETATM 43 FE FE HEM . . . LA 11 154.033 160.676 125.863 1 25.73 ? FE HEM 501 N 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #