data_8ABK # _model_server_result.job_id suc6FtMXKIQLCXQYB_qBoA _model_server_result.datetime_utc '2025-09-14 12:12:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":502}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 LA N N ? 11 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 525 n n CHA C4D HEM doub 526 n n CHA HHA HEM sing 527 n n CHB C4A HEM sing 528 n n CHB C1B HEM doub 529 n n CHB HHB HEM sing 530 n n CHC C4B HEM sing 531 n n CHC C1C HEM doub 532 n n CHC HHC HEM sing 533 n n CHD C4C HEM doub 534 n n CHD C1D HEM sing 535 n n CHD HHD HEM sing 536 n n C1A C2A HEM doub 537 n y C1A NA HEM sing 538 n y C2A C3A HEM sing 539 n y C2A CAA HEM sing 540 n n C3A C4A HEM doub 541 n y C3A CMA HEM sing 542 n n C4A NA HEM sing 543 n y CMA HMA HEM sing 544 n n CMA HMAA HEM sing 545 n n CMA HMAB HEM sing 546 n n CAA CBA HEM sing 547 n n CAA HAA HEM sing 548 n n CAA HAAA HEM sing 549 n n CBA CGA HEM sing 550 n n CBA HBA HEM sing 551 n n CBA HBAA HEM sing 552 n n CGA O1A HEM doub 553 n n CGA O2A HEM sing 554 n n C1B C2B HEM sing 555 n n C1B NB HEM sing 556 n n C2B C3B HEM doub 557 n n C2B CMB HEM sing 558 n n C3B C4B HEM sing 559 n n C3B CAB HEM sing 560 n n C4B NB HEM doub 561 n n CMB HMB HEM sing 562 n n CMB HMBA HEM sing 563 n n CMB HMBB HEM sing 564 n n CAB CBB HEM doub 565 n n CAB HAB HEM sing 566 n n CBB HBB HEM sing 567 n n CBB HBBA HEM sing 568 n n C1C C2C HEM sing 569 n y C1C NC HEM sing 570 n y C2C C3C HEM doub 571 n y C2C CMC HEM sing 572 n n C3C C4C HEM sing 573 n y C3C CAC HEM sing 574 n n C4C NC HEM sing 575 n y CMC HMC HEM sing 576 n n CMC HMCA HEM sing 577 n n CMC HMCB HEM sing 578 n n CAC CBC HEM doub 579 n n CAC HAC HEM sing 580 n n CBC HBC HEM sing 581 n n CBC HBCA HEM sing 582 n n C1D C2D HEM sing 583 n n C1D ND HEM doub 584 n n C2D C3D HEM doub 585 n n C2D CMD HEM sing 586 n n C3D C4D HEM sing 587 n n C3D CAD HEM sing 588 n n C4D ND HEM sing 589 n n CMD HMD HEM sing 590 n n CMD HMDA HEM sing 591 n n CMD HMDB HEM sing 592 n n CAD CBD HEM sing 593 n n CAD HAD HEM sing 594 n n CAD HADA HEM sing 595 n n CBD CGD HEM sing 596 n n CBD HBD HEM sing 597 n n CBD HBDA HEM sing 598 n n CGD O1D HEM doub 599 n n CGD O2D HEM sing 600 n n O2A H2A HEM sing 601 n n O2D H2D HEM sing 602 n n FE NA HEM sing 603 n n FE NB HEM sing 604 n n FE NC HEM sing 605 n n FE ND HEM sing 606 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . MA 11 157.768 166.281 148.369 1 23.75 ? CHA HEM 502 N 1 HETATM 2 C CHB HEM . . . MA 11 155.376 164.987 144.375 1 23.74 ? CHB HEM 502 N 1 HETATM 3 C CHC HEM . . . MA 11 159.543 164.574 141.939 1 24.45 ? CHC HEM 502 N 1 HETATM 4 C CHD HEM . . . MA 11 161.968 165.382 146.108 1 24.74 ? CHD HEM 502 N 1 HETATM 5 C C1A HEM . . . MA 11 156.778 166.044 147.44 1 23.87 ? C1A HEM 502 N 1 HETATM 6 C C2A HEM . . . MA 11 155.385 166.174 147.721 1 25.21 ? C2A HEM 502 N 1 HETATM 7 C C3A HEM . . . MA 11 154.658 165.811 146.611 1 25.24 ? C3A HEM 502 N 1 HETATM 8 C C4A HEM . . . MA 11 155.656 165.449 145.637 1 23.48 ? C4A HEM 502 N 1 HETATM 9 C CMA HEM . . . MA 11 153.092 165.802 146.498 1 25.13 ? CMA HEM 502 N 1 HETATM 10 C CAA HEM . . . MA 11 154.77 166.651 149.02 1 25.85 ? CAA HEM 502 N 1 HETATM 11 C CBA HEM . . . MA 11 154.327 168.115 148.784 1 32.61 ? CBA HEM 502 N 1 HETATM 12 C CGA HEM . . . MA 11 155.45 169.063 148.367 1 35.88 ? CGA HEM 502 N 1 HETATM 13 O O1A HEM . . . MA 11 155.48 169.666 147.288 1 37.33 ? O1A HEM 502 N 1 HETATM 14 O O2A HEM . . . MA 11 156.445 169.317 149.082 1 40.5 ? O2A HEM 502 N 1 HETATM 15 C C1B HEM . . . MA 11 156.352 164.721 143.412 1 24.91 ? C1B HEM 502 N 1 HETATM 16 C C2B HEM . . . MA 11 156.007 164.276 142.107 1 25.25 ? C2B HEM 502 N 1 HETATM 17 C C3B HEM . . . MA 11 157.202 164.192 141.424 1 25.94 ? C3B HEM 502 N 1 HETATM 18 C C4B HEM . . . MA 11 158.246 164.573 142.35 1 24.56 ? C4B HEM 502 N 1 HETATM 19 C CMB HEM . . . MA 11 154.606 164.036 141.558 1 26.05 ? CMB HEM 502 N 1 HETATM 20 C CAB HEM . . . MA 11 157.537 163.839 140.036 1 28.47 ? CAB HEM 502 N 1 HETATM 21 C CBB HEM . . . MA 11 156.731 163.135 139.267 1 29.97 ? CBB HEM 502 N 1 HETATM 22 C C1C HEM . . . MA 11 160.529 164.847 142.86 1 24.67 ? C1C HEM 502 N 1 HETATM 23 C C2C HEM . . . MA 11 161.878 164.971 142.553 1 23.16 ? C2C HEM 502 N 1 HETATM 24 C C3C HEM . . . MA 11 162.542 165.179 143.757 1 23.45 ? C3C HEM 502 N 1 HETATM 25 C C4C HEM . . . MA 11 161.584 165.215 144.801 1 24.44 ? C4C HEM 502 N 1 HETATM 26 C CMC HEM . . . MA 11 162.438 164.853 141.164 1 22.29 ? CMC HEM 502 N 1 HETATM 27 C CAC HEM . . . MA 11 163.999 165.331 144.01 1 24.07 ? CAC HEM 502 N 1 HETATM 28 C CBC HEM . . . MA 11 165.018 165.414 143.147 1 25.93 ? CBC HEM 502 N 1 HETATM 29 C C1D HEM . . . MA 11 160.958 165.651 147.002 1 25.42 ? C1D HEM 502 N 1 HETATM 30 C C2D HEM . . . MA 11 161.34 165.985 148.376 1 25.73 ? C2D HEM 502 N 1 HETATM 31 C C3D HEM . . . MA 11 160.171 166.259 148.989 1 25.78 ? C3D HEM 502 N 1 HETATM 32 C C4D HEM . . . MA 11 159.094 166.08 148.003 1 23.88 ? C4D HEM 502 N 1 HETATM 33 C CMD HEM . . . MA 11 162.734 165.974 148.976 1 24.06 ? CMD HEM 502 N 1 HETATM 34 C CAD HEM . . . MA 11 160.011 166.654 150.419 1 29.24 ? CAD HEM 502 N 1 HETATM 35 C CBD HEM . . . MA 11 160.148 168.182 150.413 1 34.11 ? CBD HEM 502 N 1 HETATM 36 C CGD HEM . . . MA 11 159.643 168.767 151.709 1 36.97 ? CGD HEM 502 N 1 HETATM 37 O O1D HEM . . . MA 11 160.437 169.318 152.461 1 40.2 ? O1D HEM 502 N 1 HETATM 38 O O2D HEM . . . MA 11 158.433 168.769 152.048 1 43.96 ? O2D HEM 502 N 1 HETATM 39 N NA HEM . . . MA 11 156.91 165.588 146.147 1 23.98 ? NA HEM 502 N 1 HETATM 40 N NB HEM . . . MA 11 157.674 164.864 143.504 1 24.68 ? NB HEM 502 N 1 HETATM 41 N NC HEM . . . MA 11 160.373 165.007 144.205 1 24.22 ? NC HEM 502 N 1 HETATM 42 N ND HEM . . . MA 11 159.615 165.728 146.818 1 23.86 ? ND HEM 502 N 1 HETATM 43 FE FE HEM . . . MA 11 158.654 165.383 145.243 1 23.36 ? FE HEM 502 N 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #