data_8ABK # _model_server_result.job_id 4bDKIS9Cb_dFxwiBzDjbKg _model_server_result.datetime_utc '2025-03-30 16:56:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":505}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 CA N N ? 13 PA N N ? 13 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 976 n n C1 C6 PTY sing 977 n n C1 HC11 PTY sing 978 n n C1 HC12 PTY sing 979 n n C2 C3 PTY sing 980 n n C2 N1 PTY sing 981 n n C2 HC21 PTY sing 982 n n C2 HC22 PTY sing 983 n n C3 O11 PTY sing 984 n n C3 HC31 PTY sing 985 n n C3 HC32 PTY sing 986 n n O4 C30 PTY sing 987 n n C5 C6 PTY sing 988 n n C5 O14 PTY sing 989 n n C5 HC51 PTY sing 990 n n C5 HC52 PTY sing 991 n n C6 O7 PTY sing 992 n n C6 HC6 PTY sing 993 n n O7 C8 PTY sing 994 n n C8 O10 PTY doub 995 n n C8 C11 PTY sing 996 n n C11 C12 PTY sing 997 n n C11 H111 PTY sing 998 n n C11 H112 PTY sing 999 n n C12 C13 PTY sing 1000 n n C12 H121 PTY sing 1001 n n C12 H122 PTY sing 1002 n n C13 C14 PTY sing 1003 n n C13 H131 PTY sing 1004 n n C13 H132 PTY sing 1005 n n C14 C15 PTY sing 1006 n n C14 H141 PTY sing 1007 n n C14 H142 PTY sing 1008 n n C15 C16 PTY sing 1009 n n C15 H151 PTY sing 1010 n n C15 H152 PTY sing 1011 n n C16 C17 PTY sing 1012 n n C16 H161 PTY sing 1013 n n C16 H162 PTY sing 1014 n n C17 C18 PTY sing 1015 n n C17 H171 PTY sing 1016 n n C17 H172 PTY sing 1017 n n C18 C19 PTY sing 1018 n n C18 H181 PTY sing 1019 n n C18 H182 PTY sing 1020 n n C19 C20 PTY sing 1021 n n C19 H191 PTY sing 1022 n n C19 H192 PTY sing 1023 n n C20 C21 PTY sing 1024 n n C20 H201 PTY sing 1025 n n C20 H202 PTY sing 1026 n n C21 C22 PTY sing 1027 n n C21 H211 PTY sing 1028 n n C21 H212 PTY sing 1029 n n C22 C23 PTY sing 1030 n n C22 H221 PTY sing 1031 n n C22 H222 PTY sing 1032 n n C23 C24 PTY sing 1033 n n C23 H231 PTY sing 1034 n n C23 H232 PTY sing 1035 n n C24 C25 PTY sing 1036 n n C24 H241 PTY sing 1037 n n C24 H242 PTY sing 1038 n n C25 C26 PTY sing 1039 n n C25 H251 PTY sing 1040 n n C25 H252 PTY sing 1041 n n C26 C27 PTY sing 1042 n n C26 H261 PTY sing 1043 n n C26 H262 PTY sing 1044 n n C27 C28 PTY sing 1045 n n C27 H271 PTY sing 1046 n n C27 H272 PTY sing 1047 n n C28 C29 PTY sing 1048 n n C28 H281 PTY sing 1049 n n C28 H282 PTY sing 1050 n n C29 H291 PTY sing 1051 n n C29 H292 PTY sing 1052 n n C29 H293 PTY sing 1053 n n C30 C31 PTY sing 1054 n n C30 O30 PTY doub 1055 n n C31 C32 PTY sing 1056 n n C31 H311 PTY sing 1057 n n C31 H312 PTY sing 1058 n n C32 C33 PTY sing 1059 n n C32 H321 PTY sing 1060 n n C32 H322 PTY sing 1061 n n C33 C34 PTY sing 1062 n n C33 H331 PTY sing 1063 n n C33 H332 PTY sing 1064 n n C34 C35 PTY sing 1065 n n C34 H341 PTY sing 1066 n n C34 H342 PTY sing 1067 n n C35 C36 PTY sing 1068 n n C35 H351 PTY sing 1069 n n C35 H352 PTY sing 1070 n n C36 C37 PTY sing 1071 n n C36 H361 PTY sing 1072 n n C36 H362 PTY sing 1073 n n C37 C38 PTY sing 1074 n n C37 H371 PTY sing 1075 n n C37 H372 PTY sing 1076 n n C38 C39 PTY sing 1077 n n C38 H381 PTY sing 1078 n n C38 H382 PTY sing 1079 n n C39 C40 PTY sing 1080 n n C39 H391 PTY sing 1081 n n C39 H392 PTY sing 1082 n n C40 C41 PTY sing 1083 n n C40 H401 PTY sing 1084 n n C40 H402 PTY sing 1085 n n C41 C42 PTY sing 1086 n n C41 H411 PTY sing 1087 n n C41 H412 PTY sing 1088 n n C42 C43 PTY sing 1089 n n C42 H421 PTY sing 1090 n n C42 H422 PTY sing 1091 n n C43 C44 PTY sing 1092 n n C43 H431 PTY sing 1093 n n C43 H432 PTY sing 1094 n n C44 H441 PTY sing 1095 n n C44 H442 PTY sing 1096 n n C44 H443 PTY sing 1097 n n P1 O11 PTY sing 1098 n n P1 O12 PTY sing 1099 n n P1 O13 PTY doub 1100 n n P1 O14 PTY sing 1101 n n O12 H12O PTY sing 1102 n n N1 HN11 PTY sing 1103 n n N1 HN12 PTY sing 1104 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . PA 13 134.698 169.803 148.692 1 75.76 ? C1 PTY 505 N 1 HETATM 2 C C2 PTY . . . PA 13 131.674 171.398 154.946 1 52.58 ? C2 PTY 505 N 1 HETATM 3 C C3 PTY . . . PA 13 132.818 172.091 154.244 1 53.31 ? C3 PTY 505 N 1 HETATM 4 O O4 PTY . . . PA 13 136.103 170.033 148.467 1 83.51 ? O4 PTY 505 N 1 HETATM 5 C C5 PTY . . . PA 13 133.82 170.459 150.943 1 59.13 ? C5 PTY 505 N 1 HETATM 6 C C6 PTY . . . PA 13 134.203 170.926 149.563 1 65.84 ? C6 PTY 505 N 1 HETATM 7 O O7 PTY . . . PA 13 133.147 171.646 148.851 1 63.83 ? O7 PTY 505 N 1 HETATM 8 C C8 PTY . . . PA 13 133.472 172.409 147.78 1 66.59 ? C8 PTY 505 N 1 HETATM 9 O O10 PTY . . . PA 13 134.046 173.458 147.862 1 66.74 ? O10 PTY 505 N 1 HETATM 10 C C11 PTY . . . PA 13 133.032 171.889 146.443 1 73.6 ? C11 PTY 505 N 1 HETATM 11 C C12 PTY . . . PA 13 133.341 172.827 145.306 1 78.87 ? C12 PTY 505 N 1 HETATM 12 C C13 PTY . . . PA 13 134.232 172.208 144.248 1 82.07 ? C13 PTY 505 N 1 HETATM 13 C C14 PTY . . . PA 13 135.393 171.403 144.776 1 86.85 ? C14 PTY 505 N 1 HETATM 14 C C15 PTY . . . PA 13 136.647 171.481 143.912 1 93.44 ? C15 PTY 505 N 1 HETATM 15 C C16 PTY . . . PA 13 136.675 170.604 142.662 1 91.85 ? C16 PTY 505 N 1 HETATM 16 C C17 PTY . . . PA 13 137.002 171.327 141.357 1 95.42 ? C17 PTY 505 N 1 HETATM 17 C C18 PTY . . . PA 13 138.473 171.441 141.005 1 96.73 ? C18 PTY 505 N 1 HETATM 18 C C19 PTY . . . PA 13 138.896 170.716 139.742 1 101.72 ? C19 PTY 505 N 1 HETATM 19 C C20 PTY . . . PA 13 138.124 171.098 138.497 1 108.79 ? C20 PTY 505 N 1 HETATM 20 C C30 PTY . . . PA 13 136.869 168.973 148.675 1 93.43 ? C30 PTY 505 N 1 HETATM 21 C C31 PTY . . . PA 13 138.167 169.067 147.927 1 98.19 ? C31 PTY 505 N 1 HETATM 22 O O30 PTY . . . PA 13 136.516 168.06 149.372 1 99.33 ? O30 PTY 505 N 1 HETATM 23 C C32 PTY . . . PA 13 138.958 170.284 148.291 1 111.66 ? C32 PTY 505 N 1 HETATM 24 C C33 PTY . . . PA 13 139.796 170.794 147.134 1 115.97 ? C33 PTY 505 N 1 HETATM 25 C C34 PTY . . . PA 13 139.606 170.029 145.848 1 115.03 ? C34 PTY 505 N 1 HETATM 26 C C35 PTY . . . PA 13 140.854 169.332 145.344 1 118.86 ? C35 PTY 505 N 1 HETATM 27 C C36 PTY . . . PA 13 142.034 169.274 146.304 1 121.38 ? C36 PTY 505 N 1 HETATM 28 C C37 PTY . . . PA 13 143.351 169.563 145.634 1 122.23 ? C37 PTY 505 N 1 HETATM 29 C C38 PTY . . . PA 13 144.552 169.243 146.473 1 126 ? C38 PTY 505 N 1 HETATM 30 C C39 PTY . . . PA 13 145.674 168.567 145.73 1 123.15 ? C39 PTY 505 N 1 HETATM 31 C C40 PTY . . . PA 13 145.752 168.852 144.242 1 117.57 ? C40 PTY 505 N 1 HETATM 32 C C41 PTY . . . PA 13 146.16 167.633 143.468 1 116.31 ? C41 PTY 505 N 1 HETATM 33 C C42 PTY . . . PA 13 146.474 167.826 142.005 1 114.46 ? C42 PTY 505 N 1 HETATM 34 C C43 PTY . . . PA 13 146.827 166.472 141.438 1 113.29 ? C43 PTY 505 N 1 HETATM 35 C C44 PTY . . . PA 13 145.908 165.916 140.382 1 110.41 ? C44 PTY 505 N 1 HETATM 36 P P1 PTY . . . PA 13 135.062 171.083 153.202 1 51.1 ? P1 PTY 505 N 1 HETATM 37 O O11 PTY . . . PA 13 134.045 171.315 154.426 1 52.66 ? O11 PTY 505 N 1 HETATM 38 O O12 PTY . . . PA 13 136.197 172.047 153.412 1 56.04 ? O12 PTY 505 N 1 HETATM 39 O O13 PTY . . . PA 13 135.348 169.64 152.899 1 55.04 ? O13 PTY 505 N 1 HETATM 40 O O14 PTY . . . PA 13 134.273 171.496 151.863 1 58.83 ? O14 PTY 505 N 1 HETATM 41 N N1 PTY . . . PA 13 131.581 169.991 154.551 1 53.21 ? N1 PTY 505 N 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #