data_8ABK # _model_server_result.job_id YDrdSnEp4MixbVTUWTjUBg _model_server_result.datetime_utc '2025-03-30 16:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":507}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 322.439 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 DCQ doub 338 n n C2 C3 DCQ sing 339 n n C2 C1 DCQ sing 340 n n C3 O3 DCQ sing 341 n n C3 C4 DCQ doub 342 n n O3 C3M DCQ sing 343 n n C4 O4 DCQ sing 344 n n C4 C5 DCQ sing 345 n n O4 C4M DCQ sing 346 n n C5 O5 DCQ doub 347 n n C5 C6 DCQ sing 348 n n C1 C1M DCQ sing 349 n n C1 C6 DCQ doub 350 n n C6 C7 DCQ sing 351 n n C7 C8 DCQ sing 352 n n C8 C9 DCQ sing 353 n n C9 C10 DCQ sing 354 n n C10 C11 DCQ sing 355 n n C11 C12 DCQ sing 356 n n C12 C13 DCQ sing 357 n n C13 C14 DCQ sing 358 n n C14 C15 DCQ sing 359 n n C15 C16 DCQ sing 360 n n C3M H3M DCQ sing 361 n n C3M H3MA DCQ sing 362 n n C3M H3MB DCQ sing 363 n n C4M H4M DCQ sing 364 n n C4M H4MA DCQ sing 365 n n C4M H4MB DCQ sing 366 n n C1M H1M DCQ sing 367 n n C1M H1MA DCQ sing 368 n n C1M H1MB DCQ sing 369 n n C7 H7 DCQ sing 370 n n C7 H7A DCQ sing 371 n n C8 H8 DCQ sing 372 n n C8 H8A DCQ sing 373 n n C9 H9 DCQ sing 374 n n C9 H9A DCQ sing 375 n n C10 H10 DCQ sing 376 n n C10 H10A DCQ sing 377 n n C11 H11 DCQ sing 378 n n C11 H11A DCQ sing 379 n n C12 H12 DCQ sing 380 n n C12 H12A DCQ sing 381 n n C13 H13 DCQ sing 382 n n C13 H13A DCQ sing 383 n n C14 H14 DCQ sing 384 n n C14 H14A DCQ sing 385 n n C15 H15 DCQ sing 386 n n C15 H15A DCQ sing 387 n n C16 H16 DCQ sing 388 n n C16 H16A DCQ sing 389 n n C16 H16B DCQ sing 390 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . RA 15 151.984 165.868 151.391 1 71.34 ? O2 DCQ 507 N 1 HETATM 2 C C2 DCQ . . . RA 15 151.441 166.552 150.53 1 70.26 ? C2 DCQ 507 N 1 HETATM 3 C C3 DCQ . . . RA 15 151.518 168.012 150.654 1 70.15 ? C3 DCQ 507 N 1 HETATM 4 O O3 DCQ . . . RA 15 151.998 168.577 151.798 1 70.45 ? O3 DCQ 507 N 1 HETATM 5 C C3M DCQ . . . RA 15 153.375 168.934 151.785 1 70.57 ? C3M DCQ 507 N 1 HETATM 6 C C4 DCQ . . . RA 15 150.925 168.803 149.64 1 70.77 ? C4 DCQ 507 N 1 HETATM 7 O O4 DCQ . . . RA 15 150.562 170.126 149.517 1 73.35 ? O4 DCQ 507 N 1 HETATM 8 C C4M DCQ . . . RA 15 151.357 171.193 150.039 1 70.82 ? C4M DCQ 507 N 1 HETATM 9 C C5 DCQ . . . RA 15 150.242 168.149 148.574 1 72.48 ? C5 DCQ 507 N 1 HETATM 10 O O5 DCQ . . . RA 15 149.717 168.873 147.754 1 71.4 ? O5 DCQ 507 N 1 HETATM 11 C C1 DCQ . . . RA 15 150.635 165.914 149.414 1 73.5 ? C1 DCQ 507 N 1 HETATM 12 C C1M DCQ . . . RA 15 150.449 164.427 149.34 1 70.67 ? C1M DCQ 507 N 1 HETATM 13 C C6 DCQ . . . RA 15 150.02 166.725 148.493 1 75.7 ? C6 DCQ 507 N 1 HETATM 14 C C7 DCQ . . . RA 15 149.026 166.176 147.491 1 79.88 ? C7 DCQ 507 N 1 HETATM 15 C C8 DCQ . . . RA 15 149.435 165.924 146.047 1 83.56 ? C8 DCQ 507 N 1 HETATM 16 C C9 DCQ . . . RA 15 148.725 164.701 145.488 1 85.36 ? C9 DCQ 507 N 1 HETATM 17 C C10 DCQ . . . RA 15 149.37 163.392 145.863 1 91.86 ? C10 DCQ 507 N 1 HETATM 18 C C11 DCQ . . . RA 15 149.833 162.585 144.667 1 91.18 ? C11 DCQ 507 N 1 HETATM 19 C C12 DCQ . . . RA 15 151.322 162.645 144.41 1 96.22 ? C12 DCQ 507 N 1 HETATM 20 C C13 DCQ . . . RA 15 151.982 161.312 144.118 1 93.47 ? C13 DCQ 507 N 1 HETATM 21 C C14 DCQ . . . RA 15 151.725 160.755 142.74 1 92.95 ? C14 DCQ 507 N 1 HETATM 22 C C15 DCQ . . . RA 15 151.791 159.252 142.728 1 96.94 ? C15 DCQ 507 N 1 HETATM 23 C C16 DCQ . . . RA 15 150.909 158.621 141.674 1 99.56 ? C16 DCQ 507 N 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #