data_8ABK # _model_server_result.job_id sRY2sDhIs6njS9rUc2qxkQ _model_server_result.datetime_utc '2025-03-30 16:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":508}' # _entry.id 8ABK # _exptl.entry_id 8ABK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 AA N N ? 16 KA N N ? 16 SA N N ? 16 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 LA FE HEM . N HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 MA FE HEM . N HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 XA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 670 n n C1B O1B LMT sing 671 n n C1B O5B LMT sing 672 n n C1B H1B LMT sing 673 n n C2B C3B LMT sing 674 n n C2B O2B LMT sing 675 n n C2B H2B LMT sing 676 n n C3B C4B LMT sing 677 n n C3B O3B LMT sing 678 n n C3B H3B LMT sing 679 n n C4B C5B LMT sing 680 n n C4B O4' LMT sing 681 n n C4B H4B LMT sing 682 n n C5B C6B LMT sing 683 n n C5B O5B LMT sing 684 n n C5B H5B LMT sing 685 n n C6B O6B LMT sing 686 n n C6B "H6'2" LMT sing 687 n n C6B "H6'1" LMT sing 688 n n O1B C4' LMT sing 689 n n O2B H2O1 LMT sing 690 n n O3B H3O1 LMT sing 691 n n O4' H4O1 LMT sing 692 n n O6B H6B LMT sing 693 n n C1' C2' LMT sing 694 n n C1' O1' LMT sing 695 n n C1' O5' LMT sing 696 n n C1' H1' LMT sing 697 n n C2' C3' LMT sing 698 n n C2' O2' LMT sing 699 n n C2' H2' LMT sing 700 n n C3' C4' LMT sing 701 n n C3' O3' LMT sing 702 n n C3' H3' LMT sing 703 n n C4' C5' LMT sing 704 n n C4' H4' LMT sing 705 n n C5' C6' LMT sing 706 n n C5' O5' LMT sing 707 n n C5' H5' LMT sing 708 n n C6' O6' LMT sing 709 n n C6' H6D LMT sing 710 n n C6' H6E LMT sing 711 n n O1' C1 LMT sing 712 n n O2' H2O2 LMT sing 713 n n O3' H3O2 LMT sing 714 n n O6' H6' LMT sing 715 n n C1 C2 LMT sing 716 n n C1 H12 LMT sing 717 n n C1 H11 LMT sing 718 n n C2 C3 LMT sing 719 n n C2 H22 LMT sing 720 n n C2 H21 LMT sing 721 n n C3 C4 LMT sing 722 n n C3 H32 LMT sing 723 n n C3 H31 LMT sing 724 n n C4 C5 LMT sing 725 n n C4 H42 LMT sing 726 n n C4 H41 LMT sing 727 n n C5 C6 LMT sing 728 n n C5 H52 LMT sing 729 n n C5 H51 LMT sing 730 n n C6 C7 LMT sing 731 n n C6 H62 LMT sing 732 n n C6 H61 LMT sing 733 n n C7 C8 LMT sing 734 n n C7 H72 LMT sing 735 n n C7 H71 LMT sing 736 n n C8 C9 LMT sing 737 n n C8 H82 LMT sing 738 n n C8 H81 LMT sing 739 n n C9 C10 LMT sing 740 n n C9 H92 LMT sing 741 n n C9 H91 LMT sing 742 n n C10 C11 LMT sing 743 n n C10 H102 LMT sing 744 n n C10 H101 LMT sing 745 n n C11 C12 LMT sing 746 n n C11 H112 LMT sing 747 n n C11 H111 LMT sing 748 n n C12 H123 LMT sing 749 n n C12 H122 LMT sing 750 n n C12 H121 LMT sing 751 n n # _atom_sites.entry_id 8ABK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEM C 1 501 501 HEM HEM . V 11 HEM C 1 502 502 HEM HEM . W 12 PC1 C 1 503 503 PC1 PC1 . X 13 PTY C 1 504 504 PTY PTY . Y 14 CDL C 1 505 505 CDL CDL . Z 15 DCQ C 1 506 506 DCQ DCQ . AA 16 LMT C 1 507 507 LMT LMT . BA 17 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 302 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3002 CDL CDL . FA 18 XP4 A 1 3003 3003 XP4 XP4 . GA 19 HEC D 1 401 401 HEC HEC . HA 14 CDL H 1 701 701 CDL CDL . IA 14 CDL H 1 702 702 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 16 LMT J 1 101 101 LMT LMT . LA 11 HEM N 1 501 501 HEM HEM . MA 11 HEM N 1 502 502 HEM HEM . NA 12 PC1 N 1 503 503 PC1 PC1 . OA 14 CDL N 1 504 504 CDL CDL . PA 13 PTY N 1 505 505 PTY PTY . QA 14 CDL N 1 506 506 CDL CDL . RA 15 DCQ N 1 507 507 DCQ DCQ . SA 16 LMT N 1 508 508 LMT LMT . TA 13 PTY E 1 401 401 PTY PTY . UA 14 CDL L 1 3001 3001 CDL CDL . VA 14 CDL L 1 3002 3002 CDL CDL . WA 18 XP4 L 1 3003 3003 XP4 XP4 . XA 19 HEC O 1 401 401 HEC HEC . YA 14 CDL S 1 101 101 CDL CDL . ZA 12 PC1 T 1 201 201 PC1 PC1 . AB 16 LMT U 1 101 101 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . SA 16 149.637 156.746 160.278 1 116.78 ? C1B LMT 508 N 1 HETATM 2 C C2B LMT . . . SA 16 150.278 156.882 161.653 1 119.07 ? C2B LMT 508 N 1 HETATM 3 C C3B LMT . . . SA 16 149.677 155.883 162.645 1 122 ? C3B LMT 508 N 1 HETATM 4 C C4B LMT . . . SA 16 148.14 155.829 162.645 1 122.82 ? C4B LMT 508 N 1 HETATM 5 C C5B LMT . . . SA 16 147.476 156.043 161.263 1 124.3 ? C5B LMT 508 N 1 HETATM 6 C C6B LMT . . . SA 16 146.07 156.66 161.339 1 128.82 ? C6B LMT 508 N 1 HETATM 7 O O1B LMT . . . SA 16 149.982 155.479 159.706 1 114.53 ? O1B LMT 508 N 1 HETATM 8 O O2B LMT . . . SA 16 151.682 156.679 161.478 1 121.44 ? O2B LMT 508 N 1 HETATM 9 O O3B LMT . . . SA 16 150.156 156.166 163.965 1 123.27 ? O3B LMT 508 N 1 HETATM 10 O O4' LMT . . . SA 16 147.811 154.529 163.146 1 127.93 ? O4' LMT 508 N 1 HETATM 11 O O5B LMT . . . SA 16 148.224 156.888 160.372 1 121.93 ? O5B LMT 508 N 1 HETATM 12 O O6B LMT . . . SA 16 145.782 157.498 160.201 1 124.6 ? O6B LMT 508 N 1 HETATM 13 C C1' LMT . . . SA 16 151.273 154.36 155.926 1 102.99 ? C1' LMT 508 N 1 HETATM 14 C C2' LMT . . . SA 16 151.716 155.735 156.4 1 105.63 ? C2' LMT 508 N 1 HETATM 15 C C3' LMT . . . SA 16 151.525 155.83 157.895 1 108.09 ? C3' LMT 508 N 1 HETATM 16 C C4' LMT . . . SA 16 150.079 155.501 158.28 1 108.41 ? C4' LMT 508 N 1 HETATM 17 C C5' LMT . . . SA 16 149.605 154.162 157.686 1 105.08 ? C5' LMT 508 N 1 HETATM 18 C C6' LMT . . . SA 16 148.098 154.004 157.784 1 111.85 ? C6' LMT 508 N 1 HETATM 19 O O1' LMT . . . SA 16 151.405 154.414 154.525 1 94.85 ? O1' LMT 508 N 1 HETATM 20 O O2' LMT . . . SA 16 153.107 155.809 156.128 1 108.34 ? O2' LMT 508 N 1 HETATM 21 O O3' LMT . . . SA 16 151.904 157.14 158.34 1 108.53 ? O3' LMT 508 N 1 HETATM 22 O O5' LMT . . . SA 16 149.922 154.059 156.29 1 102.24 ? O5' LMT 508 N 1 HETATM 23 O O6' LMT . . . SA 16 147.482 154.256 156.51 1 116.02 ? O6' LMT 508 N 1 HETATM 24 C C1 LMT . . . SA 16 151.511 153.096 153.978 1 85.16 ? C1 LMT 508 N 1 HETATM 25 C C2 LMT . . . SA 16 151.47 153.303 152.482 1 80.49 ? C2 LMT 508 N 1 HETATM 26 C C3 LMT . . . SA 16 150.013 153.483 152.124 1 78.77 ? C3 LMT 508 N 1 HETATM 27 C C4 LMT . . . SA 16 149.726 154.712 151.296 1 79.95 ? C4 LMT 508 N 1 HETATM 28 C C5 LMT . . . SA 16 149.879 154.418 149.819 1 84.86 ? C5 LMT 508 N 1 HETATM 29 C C6 LMT . . . SA 16 148.722 155.07 149.086 1 91.4 ? C6 LMT 508 N 1 HETATM 30 C C7 LMT . . . SA 16 148.933 156.577 148.986 1 91.38 ? C7 LMT 508 N 1 HETATM 31 C C8 LMT . . . SA 16 147.656 157.275 149.408 1 98.37 ? C8 LMT 508 N 1 HETATM 32 C C9 LMT . . . SA 16 146.849 157.638 148.159 1 103.32 ? C9 LMT 508 N 1 HETATM 33 C C10 LMT . . . SA 16 146.828 159.143 147.905 1 110.06 ? C10 LMT 508 N 1 HETATM 34 C C11 LMT . . . SA 16 147.998 159.644 147.054 1 111.11 ? C11 LMT 508 N 1 HETATM 35 C C12 LMT . . . SA 16 148.898 160.548 147.87 1 105.72 ? C12 LMT 508 N 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #