data_8ABS # _model_server_result.job_id FItx1D-tQc5CqibZpC9r8A _model_server_result.datetime_utc '2025-01-25 12:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8abs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8ABS # _exptl.entry_id 8ABS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TESTOSTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ABS _cell.length_a 78.03 _cell.length_b 78.03 _cell.length_c 187.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ABS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 351 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 351 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEB _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.381 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H28 O2' _chem_comp.formula_weight 288.424 _chem_comp.id TES _chem_comp.mon_nstd_flag . _chem_comp.name TESTOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TES sing 378 n n C1 C10 TES sing 379 n n C1 H11 TES sing 380 n n C1 H12 TES sing 381 n n C2 C3 TES sing 382 n n C2 H21 TES sing 383 n n C2 H22 TES sing 384 n n C3 O3 TES doub 385 n n C3 C4 TES sing 386 n n C4 C5 TES doub 387 n n C4 H4 TES sing 388 n n C5 C6 TES sing 389 n n C5 C10 TES sing 390 n n C6 C7 TES sing 391 n n C6 H61 TES sing 392 n n C6 H62 TES sing 393 n n C7 C8 TES sing 394 n n C7 H71 TES sing 395 n n C7 H72 TES sing 396 n n C8 C9 TES sing 397 n n C8 C14 TES sing 398 n n C8 H8 TES sing 399 n n C9 C10 TES sing 400 n n C9 C11 TES sing 401 n n C9 H9 TES sing 402 n n C10 C19 TES sing 403 n n C11 C12 TES sing 404 n n C11 H111 TES sing 405 n n C11 H112 TES sing 406 n n C12 C13 TES sing 407 n n C12 H121 TES sing 408 n n C12 H122 TES sing 409 n n C13 C14 TES sing 410 n n C13 C17 TES sing 411 n n C13 C18 TES sing 412 n n C14 C15 TES sing 413 n n C14 H14 TES sing 414 n n C15 C16 TES sing 415 n n C15 H151 TES sing 416 n n C15 H152 TES sing 417 n n C16 C17 TES sing 418 n n C16 H161 TES sing 419 n n C16 H162 TES sing 420 n n C17 O17 TES sing 421 n n C17 H17 TES sing 422 n n O17 HO7 TES sing 423 n n C18 H181 TES sing 424 n n C18 H182 TES sing 425 n n C18 H183 TES sing 426 n n C19 H191 TES sing 427 n n C19 H192 TES sing 428 n n C19 H193 TES sing 429 n n # _atom_sites.entry_id 8ABS _atom_sites.fract_transf_matrix[1][1] 0.012816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEB A 1 501 501 HEB HEM . C 3 W2L A 1 502 502 W2L W2L . D 4 TES A 1 503 503 TES TES . E 5 SO4 A 1 504 1 SO4 SO4 . F 5 SO4 A 1 505 2 SO4 SO4 . G 5 SO4 A 1 506 3 SO4 SO4 . H 5 SO4 A 1 507 4 SO4 SO4 . I 5 SO4 A 1 508 5 SO4 SO4 . J 5 SO4 A 1 509 6 SO4 SO4 . K 6 HOH A 1 601 53 HOH HOH . K 6 HOH A 2 602 48 HOH HOH . K 6 HOH A 3 603 132 HOH HOH . K 6 HOH A 4 604 35 HOH HOH . K 6 HOH A 5 605 21 HOH HOH . K 6 HOH A 6 606 70 HOH HOH . K 6 HOH A 7 607 96 HOH HOH . K 6 HOH A 8 608 113 HOH HOH . K 6 HOH A 9 609 52 HOH HOH . K 6 HOH A 10 610 90 HOH HOH . K 6 HOH A 11 611 26 HOH HOH . K 6 HOH A 12 612 13 HOH HOH . K 6 HOH A 13 613 58 HOH HOH . K 6 HOH A 14 614 125 HOH HOH . K 6 HOH A 15 615 44 HOH HOH . K 6 HOH A 16 616 12 HOH HOH . K 6 HOH A 17 617 72 HOH HOH . K 6 HOH A 18 618 112 HOH HOH . K 6 HOH A 19 619 133 HOH HOH . K 6 HOH A 20 620 80 HOH HOH . K 6 HOH A 21 621 136 HOH HOH . K 6 HOH A 22 622 83 HOH HOH . K 6 HOH A 23 623 146 HOH HOH . K 6 HOH A 24 624 120 HOH HOH . K 6 HOH A 25 625 14 HOH HOH . K 6 HOH A 26 626 95 HOH HOH . K 6 HOH A 27 627 87 HOH HOH . K 6 HOH A 28 628 130 HOH HOH . K 6 HOH A 29 629 153 HOH HOH . K 6 HOH A 30 630 64 HOH HOH . K 6 HOH A 31 631 161 HOH HOH . K 6 HOH A 32 632 138 HOH HOH . K 6 HOH A 33 633 30 HOH HOH . K 6 HOH A 34 634 94 HOH HOH . K 6 HOH A 35 635 93 HOH HOH . K 6 HOH A 36 636 157 HOH HOH . K 6 HOH A 37 637 89 HOH HOH . K 6 HOH A 38 638 109 HOH HOH . K 6 HOH A 39 639 8 HOH HOH . K 6 HOH A 40 640 143 HOH HOH . K 6 HOH A 41 641 75 HOH HOH . K 6 HOH A 42 642 154 HOH HOH . K 6 HOH A 43 643 27 HOH HOH . K 6 HOH A 44 644 86 HOH HOH . K 6 HOH A 45 645 148 HOH HOH . K 6 HOH A 46 646 49 HOH HOH . K 6 HOH A 47 647 42 HOH HOH . K 6 HOH A 48 648 149 HOH HOH . K 6 HOH A 49 649 101 HOH HOH . K 6 HOH A 50 650 129 HOH HOH . K 6 HOH A 51 651 137 HOH HOH . K 6 HOH A 52 652 54 HOH HOH . K 6 HOH A 53 653 24 HOH HOH . K 6 HOH A 54 654 62 HOH HOH . K 6 HOH A 55 655 55 HOH HOH . K 6 HOH A 56 656 69 HOH HOH . K 6 HOH A 57 657 38 HOH HOH . K 6 HOH A 58 658 57 HOH HOH . K 6 HOH A 59 659 66 HOH HOH . K 6 HOH A 60 660 127 HOH HOH . K 6 HOH A 61 661 18 HOH HOH . K 6 HOH A 62 662 10 HOH HOH . K 6 HOH A 63 663 81 HOH HOH . K 6 HOH A 64 664 156 HOH HOH . K 6 HOH A 65 665 79 HOH HOH . K 6 HOH A 66 666 145 HOH HOH . K 6 HOH A 67 667 121 HOH HOH . K 6 HOH A 68 668 164 HOH HOH . K 6 HOH A 69 669 67 HOH HOH . K 6 HOH A 70 670 85 HOH HOH . K 6 HOH A 71 671 28 HOH HOH . K 6 HOH A 72 672 17 HOH HOH . K 6 HOH A 73 673 41 HOH HOH . K 6 HOH A 74 674 7 HOH HOH . K 6 HOH A 75 675 155 HOH HOH . K 6 HOH A 76 676 65 HOH HOH . K 6 HOH A 77 677 45 HOH HOH . K 6 HOH A 78 678 74 HOH HOH . K 6 HOH A 79 679 106 HOH HOH . K 6 HOH A 80 680 77 HOH HOH . K 6 HOH A 81 681 92 HOH HOH . K 6 HOH A 82 682 135 HOH HOH . K 6 HOH A 83 683 39 HOH HOH . K 6 HOH A 84 684 68 HOH HOH . K 6 HOH A 85 685 107 HOH HOH . K 6 HOH A 86 686 159 HOH HOH . K 6 HOH A 87 687 128 HOH HOH . K 6 HOH A 88 688 47 HOH HOH . K 6 HOH A 89 689 59 HOH HOH . K 6 HOH A 90 690 139 HOH HOH . K 6 HOH A 91 691 88 HOH HOH . K 6 HOH A 92 692 144 HOH HOH . K 6 HOH A 93 693 20 HOH HOH . K 6 HOH A 94 694 163 HOH HOH . K 6 HOH A 95 695 15 HOH HOH . K 6 HOH A 96 696 56 HOH HOH . K 6 HOH A 97 697 104 HOH HOH . K 6 HOH A 98 698 151 HOH HOH . K 6 HOH A 99 699 46 HOH HOH . K 6 HOH A 100 700 98 HOH HOH . K 6 HOH A 101 701 162 HOH HOH . K 6 HOH A 102 702 33 HOH HOH . K 6 HOH A 103 703 82 HOH HOH . K 6 HOH A 104 704 118 HOH HOH . K 6 HOH A 105 705 25 HOH HOH . K 6 HOH A 106 706 119 HOH HOH . K 6 HOH A 107 707 31 HOH HOH . K 6 HOH A 108 708 76 HOH HOH . K 6 HOH A 109 709 102 HOH HOH . K 6 HOH A 110 710 105 HOH HOH . K 6 HOH A 111 711 9 HOH HOH . K 6 HOH A 112 712 160 HOH HOH . K 6 HOH A 113 713 158 HOH HOH . K 6 HOH A 114 714 29 HOH HOH . K 6 HOH A 115 715 103 HOH HOH . K 6 HOH A 116 716 73 HOH HOH . K 6 HOH A 117 717 134 HOH HOH . K 6 HOH A 118 718 51 HOH HOH . K 6 HOH A 119 719 19 HOH HOH . K 6 HOH A 120 720 16 HOH HOH . K 6 HOH A 121 721 63 HOH HOH . K 6 HOH A 122 722 36 HOH HOH . K 6 HOH A 123 723 141 HOH HOH . K 6 HOH A 124 724 124 HOH HOH . K 6 HOH A 125 725 111 HOH HOH . K 6 HOH A 126 726 123 HOH HOH . K 6 HOH A 127 727 40 HOH HOH . K 6 HOH A 128 728 152 HOH HOH . K 6 HOH A 129 729 99 HOH HOH . K 6 HOH A 130 730 150 HOH HOH . K 6 HOH A 131 731 110 HOH HOH . K 6 HOH A 132 732 3 HOH HOH . K 6 HOH A 133 733 97 HOH HOH . K 6 HOH A 134 734 34 HOH HOH . K 6 HOH A 135 735 84 HOH HOH . K 6 HOH A 136 736 43 HOH HOH . K 6 HOH A 137 737 2 HOH HOH . K 6 HOH A 138 738 11 HOH HOH . K 6 HOH A 139 739 142 HOH HOH . K 6 HOH A 140 740 78 HOH HOH . K 6 HOH A 141 741 117 HOH HOH . K 6 HOH A 142 742 100 HOH HOH . K 6 HOH A 143 743 147 HOH HOH . K 6 HOH A 144 744 22 HOH HOH . K 6 HOH A 145 745 23 HOH HOH . K 6 HOH A 146 746 115 HOH HOH . K 6 HOH A 147 747 114 HOH HOH . K 6 HOH A 148 748 61 HOH HOH . K 6 HOH A 149 749 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TES . . . D 4 5.484 4.446 12.524 1 68.12 ? C1 TES 503 A 1 HETATM 2 C C2 TES . . . D 4 4.312 3.987 11.668 1 61.8 ? C2 TES 503 A 1 HETATM 3 C C3 TES . . . D 4 3.065 3.884 12.492 1 61.34 ? C3 TES 503 A 1 HETATM 4 O O3 TES . . . D 4 1.96 4.226 12.091 1 57.5 ? O3 TES 503 A 1 HETATM 5 C C4 TES . . . D 4 3.29 3.341 13.815 1 62.46 ? C4 TES 503 A 1 HETATM 6 C C5 TES . . . D 4 4.493 2.921 14.22 1 64.46 ? C5 TES 503 A 1 HETATM 7 C C6 TES . . . D 4 4.539 2.007 15.397 1 57.64 ? C6 TES 503 A 1 HETATM 8 C C7 TES . . . D 4 5.561 0.909 15.102 1 52.95 ? C7 TES 503 A 1 HETATM 9 C C8 TES . . . D 4 6.93 1.533 14.816 1 60.08 ? C8 TES 503 A 1 HETATM 10 C C9 TES . . . D 4 6.865 2.487 13.595 1 64.32 ? C9 TES 503 A 1 HETATM 11 C C10 TES . . . D 4 5.78 3.602 13.787 1 68.08 ? C10 TES 503 A 1 HETATM 12 C C11 TES . . . D 4 8.269 3.002 13.263 1 58.79 ? C11 TES 503 A 1 HETATM 13 C C12 TES . . . D 4 9.31 1.884 13.091 1 53.57 ? C12 TES 503 A 1 HETATM 14 C C13 TES . . . D 4 9.367 0.965 14.325 1 57.33 ? C13 TES 503 A 1 HETATM 15 C C14 TES . . . D 4 7.954 0.441 14.593 1 55.76 ? C14 TES 503 A 1 HETATM 16 C C15 TES . . . D 4 8.163 -0.643 15.655 1 50.9 ? C15 TES 503 A 1 HETATM 17 C C16 TES . . . D 4 9.453 -1.339 15.173 1 50.64 ? C16 TES 503 A 1 HETATM 18 C C17 TES . . . D 4 10.084 -0.376 14.144 1 52.14 ? C17 TES 503 A 1 HETATM 19 O O17 TES . . . D 4 11.487 -0.25 14.277 1 55.16 ? O17 TES 503 A 1 HETATM 20 C C18 TES . . . D 4 9.954 1.717 15.533 1 57.83 ? C18 TES 503 A 1 HETATM 21 C C19 TES . . . D 4 6.203 4.632 14.832 1 76.62 ? C19 TES 503 A 1 HETATM 22 H H11 TES . . . D 4 5.327 5.364 12.791 1 81.8 ? H11 TES 503 A 1 HETATM 23 H H12 TES . . . D 4 6.279 4.466 11.968 1 81.8 ? H12 TES 503 A 1 HETATM 24 H H21 TES . . . D 4 4.481 3.119 11.269 1 74.21 ? H21 TES 503 A 1 HETATM 25 H H22 TES . . . D 4 4.142 4.603 10.939 1 74.21 ? H22 TES 503 A 1 HETATM 26 H H4 TES . . . D 4 2.558 3.29 14.387 1 75 ? H4 TES 503 A 1 HETATM 27 H H61 TES . . . D 4 3.667 1.614 15.561 1 69.22 ? H61 TES 503 A 1 HETATM 28 H H62 TES . . . D 4 4.793 2.491 16.198 1 69.22 ? H62 TES 503 A 1 HETATM 29 H H71 TES . . . D 4 5.616 0.303 15.858 1 63.59 ? H71 TES 503 A 1 HETATM 30 H H72 TES . . . D 4 5.264 0.383 14.343 1 63.59 ? H72 TES 503 A 1 HETATM 31 H H8 TES . . . D 4 7.225 2.064 15.572 1 72.15 ? H8 TES 503 A 1 HETATM 32 H H9 TES . . . D 4 6.563 1.97 12.831 1 77.24 ? H9 TES 503 A 1 HETATM 33 H H111 TES . . . D 4 8.563 3.604 13.964 1 70.6 ? H111 TES 503 A 1 HETATM 34 H H112 TES . . . D 4 8.232 3.53 12.451 1 70.6 ? H112 TES 503 A 1 HETATM 35 H H121 TES . . . D 4 10.177 2.287 12.928 1 64.34 ? H121 TES 503 A 1 HETATM 36 H H122 TES . . . D 4 9.09 1.373 12.297 1 64.34 ? H122 TES 503 A 1 HETATM 37 H H14 TES . . . D 4 7.677 -0.015 13.784 1 66.96 ? H14 TES 503 A 1 HETATM 38 H H151 TES . . . D 4 8.264 -0.266 16.543 1 61.14 ? H151 TES 503 A 1 HETATM 39 H H152 TES . . . D 4 7.413 -1.257 15.698 1 61.14 ? H152 TES 503 A 1 HETATM 40 H H161 TES . . . D 4 10.069 -1.504 15.904 1 60.82 ? H161 TES 503 A 1 HETATM 41 H H162 TES . . . D 4 9.267 -2.198 14.762 1 60.82 ? H162 TES 503 A 1 HETATM 42 H H17 TES . . . D 4 9.84 -0.679 13.256 1 62.62 ? H17 TES 503 A 1 HETATM 43 H HO7 TES . . . D 4 11.805 -1.018 14.46 1 66.25 ? HO7 TES 503 A 1 HETATM 44 H H181 TES . . . D 4 10.236 1.114 16.239 1 69.45 ? H181 TES 503 A 1 HETATM 45 H H182 TES . . . D 4 9.314 2.328 15.931 1 69.45 ? H182 TES 503 A 1 HETATM 46 H H183 TES . . . D 4 10.731 2.246 15.295 1 69.45 ? H183 TES 503 A 1 HETATM 47 H H191 TES . . . D 4 5.538 4.695 15.535 1 92 ? H191 TES 503 A 1 HETATM 48 H H192 TES . . . D 4 6.303 5.507 14.426 1 92 ? H192 TES 503 A 1 HETATM 49 H H193 TES . . . D 4 7.05 4.382 15.233 1 92 ? H193 TES 503 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #