data_8AC5 # _model_server_result.job_id pc4cP0ejSJAX9X05OhMVRw _model_server_result.datetime_utc '2024-10-15 11:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":101}' # _entry.id 8AC5 # _exptl.entry_id 8AC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AC5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 PA N N ? 15 QA N N ? 15 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEC C 1 501 501 HEC HEM . V 11 HEC C 1 502 502 HEC HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 14 CDL C 1 507 901 CDL CDL . BA 16 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 11 HEC D 1 401 401 HEC HEC . HA 14 CDL D 1 402 101 CDL CDL . IA 14 CDL H 1 701 701 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEC N 1 501 501 HEC HEM . LA 11 HEC N 1 502 502 HEC HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 14 CDL N 1 504 701 CDL CDL . OA 13 PTY N 1 505 801 PTY PTY . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 11 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 101 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 15 LMT U 1 101 502 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . YA 15 130.043 171.487 119.33 1 189.67 ? C1B LMT 101 U 1 HETATM 2 C C2B LMT . . . YA 15 129.848 172.166 117.966 1 195.52 ? C2B LMT 101 U 1 HETATM 3 C C3B LMT . . . YA 15 131.171 172.241 117.179 1 196.73 ? C3B LMT 101 U 1 HETATM 4 C C4B LMT . . . YA 15 132.401 172.638 118.016 1 190.12 ? C4B LMT 101 U 1 HETATM 5 C C5B LMT . . . YA 15 132.378 171.996 119.414 1 195.3 ? C5B LMT 101 U 1 HETATM 6 C C6B LMT . . . YA 15 133.407 172.566 120.368 1 190.16 ? C6B LMT 101 U 1 HETATM 7 O O1B LMT . . . YA 15 130.35 170.101 119.119 1 158.11 ? O1B LMT 101 U 1 HETATM 8 O O2B LMT . . . YA 15 128.884 171.432 117.203 1 191.25 ? O2B LMT 101 U 1 HETATM 9 O O3B LMT . . . YA 15 131.012 173.136 116.07 1 202.87 ? O3B LMT 101 U 1 HETATM 10 O O4' LMT . . . YA 15 133.571 172.212 117.308 1 182.64 ? O4' LMT 101 U 1 HETATM 11 O O5B LMT . . . YA 15 131.097 172.148 120.045 1 198.76 ? O5B LMT 101 U 1 HETATM 12 O O6B LMT . . . YA 15 133.194 172.039 121.689 1 182.5 ? O6B LMT 101 U 1 HETATM 13 C C1' LMT . . . YA 15 129.402 166.397 120.466 1 114.43 ? C1' LMT 101 U 1 HETATM 14 C C2' LMT . . . YA 15 128.17 167.248 120.211 1 116.44 ? C2' LMT 101 U 1 HETATM 15 C C3' LMT . . . YA 15 128.581 168.541 119.508 1 128.83 ? C3' LMT 101 U 1 HETATM 16 C C4' LMT . . . YA 15 129.819 169.227 120.114 1 129.93 ? C4' LMT 101 U 1 HETATM 17 C C5' LMT . . . YA 15 130.887 168.195 120.501 1 118.24 ? C5' LMT 101 U 1 HETATM 18 C C6' LMT . . . YA 15 131.99 168.81 121.336 1 114.89 ? C6' LMT 101 U 1 HETATM 19 O O1' LMT . . . YA 15 129.031 165.261 121.224 1 113.7 ? O1' LMT 101 U 1 HETATM 20 O O2' LMT . . . YA 15 127.263 166.529 119.377 1 112.89 ? O2' LMT 101 U 1 HETATM 21 O O3' LMT . . . YA 15 127.454 169.441 119.458 1 145.4 ? O3' LMT 101 U 1 HETATM 22 O O5' LMT . . . YA 15 130.3 167.151 121.262 1 111.75 ? O5' LMT 101 U 1 HETATM 23 O O6' LMT . . . YA 15 132.716 167.711 121.892 1 109.87 ? O6' LMT 101 U 1 HETATM 24 C C1 LMT . . . YA 15 130.119 164.812 122.045 1 102.44 ? C1 LMT 101 U 1 HETATM 25 C C2 LMT . . . YA 15 129.626 163.925 123.181 1 99.9 ? C2 LMT 101 U 1 HETATM 26 C C3 LMT . . . YA 15 130.614 162.887 123.702 1 92.64 ? C3 LMT 101 U 1 HETATM 27 C C4 LMT . . . YA 15 129.889 162.296 124.898 1 97.96 ? C4 LMT 101 U 1 HETATM 28 C C5 LMT . . . YA 15 130.78 161.452 125.798 1 101.75 ? C5 LMT 101 U 1 HETATM 29 C C6 LMT . . . YA 15 130.54 161.79 127.253 1 107.99 ? C6 LMT 101 U 1 HETATM 30 C C7 LMT . . . YA 15 129.73 160.678 127.933 1 121.33 ? C7 LMT 101 U 1 HETATM 31 C C8 LMT . . . YA 15 129.751 160.774 129.456 1 140.55 ? C8 LMT 101 U 1 HETATM 32 C C9 LMT . . . YA 15 129.606 159.421 130.194 1 162.76 ? C9 LMT 101 U 1 HETATM 33 C C10 LMT . . . YA 15 130.5 159.154 131.434 1 171.91 ? C10 LMT 101 U 1 HETATM 34 C C11 LMT . . . YA 15 131.82 159.93 131.632 1 172.4 ? C11 LMT 101 U 1 HETATM 35 C C12 LMT . . . YA 15 132.523 159.552 132.93 1 147.84 ? C12 LMT 101 U 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #