data_8AC5 # _model_server_result.job_id IltTKg31WDWQivbDJjQOrg _model_server_result.datetime_utc '2024-10-15 11:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":302}' # _entry.id 8AC5 # _exptl.entry_id 8AC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AC5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 CA N N ? 13 OA N N ? 13 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEC C 1 501 501 HEC HEM . V 11 HEC C 1 502 502 HEC HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 14 CDL C 1 507 901 CDL CDL . BA 16 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 11 HEC D 1 401 401 HEC HEC . HA 14 CDL D 1 402 101 CDL CDL . IA 14 CDL H 1 701 701 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEC N 1 501 501 HEC HEM . LA 11 HEC N 1 502 502 HEC HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 14 CDL N 1 504 701 CDL CDL . OA 13 PTY N 1 505 801 PTY PTY . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 11 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 101 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 15 LMT U 1 101 502 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . RA 13 166.66 126.22 129.036 1 95.91 ? C1 PTY 302 E 1 HETATM 2 C C2 PTY . . . RA 13 172.194 129.278 126.951 1 113.44 ? C2 PTY 302 E 1 HETATM 3 C C3 PTY . . . RA 13 171.214 129.445 125.813 1 117.33 ? C3 PTY 302 E 1 HETATM 4 O O4 PTY . . . RA 13 165.513 126.389 129.891 1 92.1 ? O4 PTY 302 E 1 HETATM 5 C C5 PTY . . . RA 13 167.222 126.295 126.584 1 105.3 ? C5 PTY 302 E 1 HETATM 6 C C6 PTY . . . RA 13 166.219 126.635 127.659 1 99.6 ? C6 PTY 302 E 1 HETATM 7 O O7 PTY . . . RA 13 165.898 128.05 127.632 1 99.06 ? O7 PTY 302 E 1 HETATM 8 C C8 PTY . . . RA 13 164.864 128.446 126.876 1 105.45 ? C8 PTY 302 E 1 HETATM 9 O O10 PTY . . . RA 13 164.423 127.819 125.947 1 123.6 ? O10 PTY 302 E 1 HETATM 10 C C11 PTY . . . RA 13 164.321 129.742 127.355 1 98.86 ? C11 PTY 302 E 1 HETATM 11 C C12 PTY . . . RA 13 163.919 129.653 128.781 1 94.41 ? C12 PTY 302 E 1 HETATM 12 C C13 PTY . . . RA 13 162.426 129.719 128.977 1 98.93 ? C13 PTY 302 E 1 HETATM 13 C C14 PTY . . . RA 13 161.86 128.562 129.767 1 103.13 ? C14 PTY 302 E 1 HETATM 14 C C15 PTY . . . RA 13 160.881 128.933 130.88 1 100.56 ? C15 PTY 302 E 1 HETATM 15 C C16 PTY . . . RA 13 160.955 130.364 131.431 1 103.6 ? C16 PTY 302 E 1 HETATM 16 C C17 PTY . . . RA 13 159.618 131.111 131.472 1 102.77 ? C17 PTY 302 E 1 HETATM 17 C C18 PTY . . . RA 13 159.706 132.613 131.769 1 98.56 ? C18 PTY 302 E 1 HETATM 18 C C19 PTY . . . RA 13 159.352 133.561 130.617 1 91.55 ? C19 PTY 302 E 1 HETATM 19 C C20 PTY . . . RA 13 159.964 134.966 130.717 1 87.16 ? C20 PTY 302 E 1 HETATM 20 C C30 PTY . . . RA 13 165.774 126.484 131.182 1 91.34 ? C30 PTY 302 E 1 HETATM 21 C C31 PTY . . . RA 13 165.008 127.596 131.785 1 97.64 ? C31 PTY 302 E 1 HETATM 22 O O30 PTY . . . RA 13 166.539 125.761 131.755 1 95.86 ? O30 PTY 302 E 1 HETATM 23 C C32 PTY . . . RA 13 164.11 127.17 132.851 1 95.46 ? C32 PTY 302 E 1 HETATM 24 C C33 PTY . . . RA 13 164.499 127.832 134.141 1 103.67 ? C33 PTY 302 E 1 HETATM 25 C C34 PTY . . . RA 13 163.315 128.09 135.003 1 114.42 ? C34 PTY 302 E 1 HETATM 26 C C35 PTY . . . RA 13 163.334 129.352 135.808 1 114.49 ? C35 PTY 302 E 1 HETATM 27 C C36 PTY . . . RA 13 164.667 129.758 136.364 1 116.61 ? C36 PTY 302 E 1 HETATM 28 C C37 PTY . . . RA 13 164.816 131.243 136.298 1 136.68 ? C37 PTY 302 E 1 HETATM 29 C C38 PTY . . . RA 13 164.169 131.883 135.068 1 146.05 ? C38 PTY 302 E 1 HETATM 30 C C39 PTY . . . RA 13 163.595 133.273 135.247 1 146.14 ? C39 PTY 302 E 1 HETATM 31 C C40 PTY . . . RA 13 164.598 134.304 135.681 1 159.05 ? C40 PTY 302 E 1 HETATM 32 C C41 PTY . . . RA 13 164.621 135.571 134.865 1 169.68 ? C41 PTY 302 E 1 HETATM 33 C C42 PTY . . . RA 13 165.277 136.748 135.573 1 187.66 ? C42 PTY 302 E 1 HETATM 34 C C43 PTY . . . RA 13 166.314 136.515 136.674 1 205.9 ? C43 PTY 302 E 1 HETATM 35 C C44 PTY . . . RA 13 167.734 137.036 136.485 1 193.8 ? C44 PTY 302 E 1 HETATM 36 P P1 PTY . . . RA 13 169.488 127.419 125.88 1 101.02 ? P1 PTY 302 E 1 HETATM 37 O O11 PTY . . . RA 13 169.895 128.946 126.179 1 110.04 ? O11 PTY 302 E 1 HETATM 38 O O12 PTY . . . RA 13 169.823 127.065 124.453 1 96.29 ? O12 PTY 302 E 1 HETATM 39 O O13 PTY . . . RA 13 170.006 126.584 127.021 1 104.68 ? O13 PTY 302 E 1 HETATM 40 O O14 PTY . . . RA 13 167.894 127.475 126.068 1 100.07 ? O14 PTY 302 E 1 HETATM 41 N N1 PTY . . . RA 13 173.055 128.108 126.719 1 113.22 ? N1 PTY 302 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #