data_8AC5 # _model_server_result.job_id GVq2QEuxKtmo2JwS_iJTSg _model_server_result.datetime_utc '2024-10-15 11:28:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":502}' # _entry.id 8AC5 # _exptl.entry_id 8AC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AC5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 GA N N ? 11 KA N N ? 11 LA N N ? 11 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEC C 1 501 501 HEC HEM . V 11 HEC C 1 502 502 HEC HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 14 CDL C 1 507 901 CDL CDL . BA 16 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 11 HEC D 1 401 401 HEC HEC . HA 14 CDL D 1 402 101 CDL CDL . IA 14 CDL H 1 701 701 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEC N 1 501 501 HEC HEM . LA 11 HEC N 1 502 502 HEC HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 14 CDL N 1 504 701 CDL CDL . OA 13 PTY N 1 505 801 PTY PTY . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 11 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 101 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 15 LMT U 1 101 502 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . LA 11 158.706 165.483 145.234 1 35.24 ? FE HEC 502 N 1 HETATM 2 C CHA HEC . . . LA 11 157.835 166.281 148.416 1 38.42 ? CHA HEC 502 N 1 HETATM 3 C CHB HEC . . . LA 11 155.426 165.034 144.397 1 37.1 ? CHB HEC 502 N 1 HETATM 4 C CHC HEC . . . LA 11 159.538 164.648 141.917 1 35.58 ? CHC HEC 502 N 1 HETATM 5 C CHD HEC . . . LA 11 161.997 165.425 146.048 1 34.97 ? CHD HEC 502 N 1 HETATM 6 N NA HEC . . . LA 11 156.986 165.624 146.17 1 38.15 ? NA HEC 502 N 1 HETATM 7 C C1A HEC . . . LA 11 156.856 166.061 147.473 1 39.77 ? C1A HEC 502 N 1 HETATM 8 C C2A HEC . . . LA 11 155.463 166.168 147.759 1 43.95 ? C2A HEC 502 N 1 HETATM 9 C C3A HEC . . . LA 11 154.747 165.836 146.628 1 42.37 ? C3A HEC 502 N 1 HETATM 10 C C4A HEC . . . LA 11 155.73 165.504 145.643 1 39.37 ? C4A HEC 502 N 1 HETATM 11 C CMA HEC . . . LA 11 153.211 165.852 146.447 1 38.32 ? CMA HEC 502 N 1 HETATM 12 C CAA HEC . . . LA 11 154.864 166.647 149.07 1 48.93 ? CAA HEC 502 N 1 HETATM 13 C CBA HEC . . . LA 11 154.397 168.087 148.835 1 60.76 ? CBA HEC 502 N 1 HETATM 14 C CGA HEC . . . LA 11 155.504 169.053 148.428 1 68.51 ? CGA HEC 502 N 1 HETATM 15 O O1A HEC . . . LA 11 155.492 169.697 147.331 1 65.91 ? O1A HEC 502 N 1 HETATM 16 O O2A HEC . . . LA 11 156.458 169.277 149.225 1 66.36 ? O2A HEC 502 N 1 HETATM 17 N NB HEC . . . LA 11 157.695 164.923 143.52 1 36.75 ? NB HEC 502 N 1 HETATM 18 C C1B HEC . . . LA 11 156.371 164.76 143.433 1 37.01 ? C1B HEC 502 N 1 HETATM 19 C C2B HEC . . . LA 11 155.987 164.343 142.116 1 37.19 ? C2B HEC 502 N 1 HETATM 20 C C3B HEC . . . LA 11 157.194 164.249 141.415 1 39.44 ? C3B HEC 502 N 1 HETATM 21 C C4B HEC . . . LA 11 158.256 164.614 142.359 1 37.24 ? C4B HEC 502 N 1 HETATM 22 C CMB HEC . . . LA 11 154.562 164.098 141.619 1 35.01 ? CMB HEC 502 N 1 HETATM 23 C CAB HEC . . . LA 11 157.534 163.888 140.025 1 37.82 ? CAB HEC 502 N 1 HETATM 24 C CBB HEC . . . LA 11 156.669 163.207 139.306 1 41.83 ? CBB HEC 502 N 1 HETATM 25 N NC HEC . . . LA 11 160.389 165.11 144.163 1 36.08 ? NC HEC 502 N 1 HETATM 26 C C1C HEC . . . LA 11 160.519 164.938 142.816 1 36.94 ? C1C HEC 502 N 1 HETATM 27 C C2C HEC . . . LA 11 161.878 165.018 142.48 1 36.5 ? C2C HEC 502 N 1 HETATM 28 C C3C HEC . . . LA 11 162.533 165.255 143.693 1 38.97 ? C3C HEC 502 N 1 HETATM 29 C C4C HEC . . . LA 11 161.602 165.288 144.753 1 36.71 ? C4C HEC 502 N 1 HETATM 30 C CMC HEC . . . LA 11 162.435 164.893 141.081 1 29.29 ? CMC HEC 502 N 1 HETATM 31 C CAC HEC . . . LA 11 163.975 165.399 143.948 1 43.93 ? CAC HEC 502 N 1 HETATM 32 C CBC HEC . . . LA 11 164.982 165.457 143.075 1 49.56 ? CBC HEC 502 N 1 HETATM 33 N ND HEC . . . LA 11 159.678 165.744 146.822 1 38.9 ? ND HEC 502 N 1 HETATM 34 C C1D HEC . . . LA 11 161.02 165.641 146.988 1 38.19 ? C1D HEC 502 N 1 HETATM 35 C C2D HEC . . . LA 11 161.405 165.946 148.373 1 38.53 ? C2D HEC 502 N 1 HETATM 36 C C3D HEC . . . LA 11 160.265 166.178 149.045 1 40.67 ? C3D HEC 502 N 1 HETATM 37 C C4D HEC . . . LA 11 159.166 166.058 148.044 1 39.69 ? C4D HEC 502 N 1 HETATM 38 C CMD HEC . . . LA 11 162.789 165.959 148.946 1 38.21 ? CMD HEC 502 N 1 HETATM 39 C CAD HEC . . . LA 11 160.165 166.538 150.515 1 43.47 ? CAD HEC 502 N 1 HETATM 40 C CBD HEC . . . LA 11 160.19 168.07 150.482 1 58.34 ? CBD HEC 502 N 1 HETATM 41 C CGD HEC . . . LA 11 159.643 168.746 151.72 1 63.49 ? CGD HEC 502 N 1 HETATM 42 O O1D HEC . . . LA 11 160.43 169.405 152.402 1 62.83 ? O1D HEC 502 N 1 HETATM 43 O O2D HEC . . . LA 11 158.436 168.749 152.04 1 68.81 ? O2D HEC 502 N 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #