data_8AC5 # _model_server_result.job_id m9fBmNJVG_PUcvcQKRbwYQ _model_server_result.datetime_utc '2024-10-15 11:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":502}' # _entry.id 8AC5 # _exptl.entry_id 8AC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AC5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 GA N N ? 11 KA N N ? 11 LA N N ? 11 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEC C 1 501 501 HEC HEM . V 11 HEC C 1 502 502 HEC HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 14 CDL C 1 507 901 CDL CDL . BA 16 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 11 HEC D 1 401 401 HEC HEC . HA 14 CDL D 1 402 101 CDL CDL . IA 14 CDL H 1 701 701 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEC N 1 501 501 HEC HEM . LA 11 HEC N 1 502 502 HEC HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 14 CDL N 1 504 701 CDL CDL . OA 13 PTY N 1 505 801 PTY PTY . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 11 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 101 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 15 LMT U 1 101 502 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . V 11 143.441 136.501 145.453 1 36.42 ? FE HEC 502 C 1 HETATM 2 C CHA HEC . . . V 11 144.222 135.711 148.641 1 41.51 ? CHA HEC 502 C 1 HETATM 3 C CHB HEC . . . V 11 146.78 136.904 144.684 1 36.61 ? CHB HEC 502 C 1 HETATM 4 C CHC HEC . . . V 11 142.678 137.241 142.103 1 38.14 ? CHC HEC 502 C 1 HETATM 5 C CHD HEC . . . V 11 140.117 136.589 146.227 1 38.54 ? CHD HEC 502 C 1 HETATM 6 N NA HEC . . . V 11 145.152 136.325 146.411 1 37.47 ? NA HEC 502 C 1 HETATM 7 C C1A HEC . . . V 11 145.243 135.942 147.735 1 40.43 ? C1A HEC 502 C 1 HETATM 8 C C2A HEC . . . V 11 146.606 135.836 148.081 1 41.77 ? C2A HEC 502 C 1 HETATM 9 C C3A HEC . . . V 11 147.35 136.163 146.972 1 39.53 ? C3A HEC 502 C 1 HETATM 10 C C4A HEC . . . V 11 146.429 136.465 145.94 1 36.63 ? C4A HEC 502 C 1 HETATM 11 C CMA HEC . . . V 11 148.882 136.195 146.839 1 43.23 ? CMA HEC 502 C 1 HETATM 12 C CAA HEC . . . V 11 147.1 135.421 149.447 1 47.23 ? CAA HEC 502 C 1 HETATM 13 C CBA HEC . . . V 11 147.594 133.974 149.322 1 64.47 ? CBA HEC 502 C 1 HETATM 14 C CGA HEC . . . V 11 146.55 132.971 148.859 1 72.79 ? CGA HEC 502 C 1 HETATM 15 O O1A HEC . . . V 11 146.598 132.316 147.773 1 76.31 ? O1A HEC 502 C 1 HETATM 16 O O2A HEC . . . V 11 145.573 132.743 149.595 1 73.76 ? O2A HEC 502 C 1 HETATM 17 N NB HEC . . . V 11 144.512 137.042 143.738 1 37.35 ? NB HEC 502 C 1 HETATM 18 C C1B HEC . . . V 11 145.843 137.164 143.665 1 37.78 ? C1B HEC 502 C 1 HETATM 19 C C2B HEC . . . V 11 146.236 137.54 142.338 1 36.86 ? C2B HEC 502 C 1 HETATM 20 C C3B HEC . . . V 11 145.051 137.631 141.638 1 37.72 ? C3B HEC 502 C 1 HETATM 21 C C4B HEC . . . V 11 143.975 137.321 142.562 1 37.43 ? C4B HEC 502 C 1 HETATM 22 C CMB HEC . . . V 11 147.666 137.758 141.852 1 35.81 ? CMB HEC 502 C 1 HETATM 23 C CAB HEC . . . V 11 144.7 137.919 140.246 1 37.36 ? CAB HEC 502 C 1 HETATM 24 C CBB HEC . . . V 11 145.503 138.558 139.437 1 41.33 ? CBB HEC 502 C 1 HETATM 25 N NC HEC . . . V 11 141.761 136.849 144.342 1 37.69 ? NC HEC 502 C 1 HETATM 26 C C1C HEC . . . V 11 141.653 136.962 142.989 1 38.69 ? C1C HEC 502 C 1 HETATM 27 C C2C HEC . . . V 11 140.3 136.867 142.658 1 37.37 ? C2C HEC 502 C 1 HETATM 28 C C3C HEC . . . V 11 139.623 136.664 143.865 1 38.65 ? C3C HEC 502 C 1 HETATM 29 C C4C HEC . . . V 11 140.54 136.691 144.921 1 38.65 ? C4C HEC 502 C 1 HETATM 30 C CMC HEC . . . V 11 139.761 136.942 141.248 1 33.37 ? CMC HEC 502 C 1 HETATM 31 C CAC HEC . . . V 11 138.167 136.54 144.129 1 42.21 ? CAC HEC 502 C 1 HETATM 32 C CBC HEC . . . V 11 137.143 136.453 143.271 1 43.5 ? CBC HEC 502 C 1 HETATM 33 N ND HEC . . . V 11 142.424 136.254 147.009 1 38.07 ? ND HEC 502 C 1 HETATM 34 C C1D HEC . . . V 11 141.088 136.363 147.165 1 38.07 ? C1D HEC 502 C 1 HETATM 35 C C2D HEC . . . V 11 140.665 136.094 148.531 1 36.84 ? C2D HEC 502 C 1 HETATM 36 C C3D HEC . . . V 11 141.779 135.82 149.201 1 40.41 ? C3D HEC 502 C 1 HETATM 37 C C4D HEC . . . V 11 142.896 135.928 148.224 1 39.75 ? C4D HEC 502 C 1 HETATM 38 C CMD HEC . . . V 11 139.277 136.098 149.087 1 35.62 ? CMD HEC 502 C 1 HETATM 39 C CAD HEC . . . V 11 141.845 135.51 150.688 1 42.55 ? CAD HEC 502 C 1 HETATM 40 C CBD HEC . . . V 11 141.866 134.005 150.73 1 51.03 ? CBD HEC 502 C 1 HETATM 41 C CGD HEC . . . V 11 142.433 133.446 151.998 1 56.33 ? CGD HEC 502 C 1 HETATM 42 O O1D HEC . . . V 11 141.607 132.877 152.734 1 53.55 ? O1D HEC 502 C 1 HETATM 43 O O2D HEC . . . V 11 143.669 133.476 152.255 1 58.26 ? O2D HEC 502 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #