data_8AC5 # _model_server_result.job_id 5AG-ZRKU4eyCsyKgQi2kZA _model_server_result.datetime_utc '2024-10-15 11:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":504}' # _entry.id 8AC5 # _exptl.entry_id 8AC5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AC5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 AA N N ? 14 DA N N ? 14 EA N N ? 14 HA N N ? 14 IA N N ? 14 NA N N ? 14 SA N N ? 14 TA N N ? 14 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 173 P CYS 173 1_555 B SG CYS 189 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 D SG CYS 81 F CYS 91 1_555 D SG CYS 123 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 D SG CYS 91 F CYS 101 1_555 D SG CYS 113 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 N SG CYS 81 Q CYS 91 1_555 N SG CYS 123 Q CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 N SG CYS 91 Q CYS 101 1_555 N SG CYS 113 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc1 A NE2 HIS 82 C HIS 82 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 96 C HIS 96 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 A NE2 HIS 183 C HIS 183 1_555 U FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A NE2 HIS 197 C HIS 197 1_555 V FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 B SG CYS 168 P CYS 168 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 B ND1 HIS 170 P HIS 170 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 B SG CYS 187 P CYS 187 1_555 BA FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B ND1 HIS 190 P HIS 190 1_555 BA FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 G NE2 HIS 128 D HIS 128 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 G SD MET 248 D MET 248 1_555 GA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc11 K NE2 HIS 82 N HIS 82 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc12 K NE2 HIS 96 N HIS 96 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc13 K NE2 HIS 183 N HIS 183 1_555 KA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc14 K NE2 HIS 197 N HIS 197 1_555 LA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc15 Q NE2 HIS 128 O HIS 128 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 Q SD MET 248 O MET 248 1_555 VA FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 8AC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 HEC C 1 501 501 HEC HEM . V 11 HEC C 1 502 502 HEC HEM . W 12 PC1 C 1 503 601 PC1 PC1 . X 13 PTY C 1 504 801 PTY PTY . Y 14 CDL C 1 505 901 CDL CDL . Z 15 LMT C 1 506 903 LMT LMT . AA 14 CDL C 1 507 901 CDL CDL . BA 16 FES P 1 301 301 FES FES . CA 13 PTY P 1 302 504 PTY PTY . DA 14 CDL A 1 3001 3001 CDL CDL . EA 14 CDL A 1 3002 3101 CDL CDL . FA 17 XP4 A 1 3003 101 XP4 XP4 . GA 11 HEC D 1 401 401 HEC HEC . HA 14 CDL D 1 402 101 CDL CDL . IA 14 CDL H 1 701 701 CDL CDL . JA 12 PC1 I 1 201 201 PC1 PC1 . KA 11 HEC N 1 501 501 HEC HEM . LA 11 HEC N 1 502 502 HEC HEM . MA 12 PC1 N 1 503 601 PC1 PC1 . NA 14 CDL N 1 504 701 CDL CDL . OA 13 PTY N 1 505 801 PTY PTY . PA 15 LMT N 1 506 903 LMT LMT . QA 15 LMT E 1 301 102 LMT LMT . RA 13 PTY E 1 302 401 PTY PTY . SA 14 CDL L 1 3001 3001 CDL CDL . TA 14 CDL L 1 3002 3101 CDL CDL . UA 17 XP4 L 1 3003 101 XP4 XP4 . VA 11 HEC O 1 401 401 HEC HEC . WA 14 CDL S 1 101 101 CDL CDL . XA 12 PC1 T 1 201 201 PC1 PC1 . YA 15 LMT U 1 101 502 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . NA 14 158.218 183.229 149.518 1 76.72 ? C1 CDL 504 N 1 HETATM 2 O O1 CDL . . . NA 14 158.959 182.353 150.357 1 90.34 ? O1 CDL 504 N 1 HETATM 3 C CA2 CDL . . . NA 14 158.053 184.522 150.257 1 70.77 ? CA2 CDL 504 N 1 HETATM 4 O OA2 CDL . . . NA 14 159.14 185.372 149.896 1 63.58 ? OA2 CDL 504 N 1 HETATM 5 P PA1 CDL . . . NA 14 159.177 186.765 150.676 1 62.59 ? PA1 CDL 504 N 1 HETATM 6 O OA3 CDL . . . NA 14 160.574 187.118 151.094 1 68.63 ? OA3 CDL 504 N 1 HETATM 7 O OA4 CDL . . . NA 14 158.096 186.769 151.725 1 65.78 ? OA4 CDL 504 N 1 HETATM 8 O OA5 CDL . . . NA 14 158.709 187.733 149.489 1 71.15 ? OA5 CDL 504 N 1 HETATM 9 C CA3 CDL . . . NA 14 159.585 187.926 148.334 1 76.46 ? CA3 CDL 504 N 1 HETATM 10 C CA4 CDL . . . NA 14 158.743 188.252 147.121 1 78.7 ? CA4 CDL 504 N 1 HETATM 11 O OA6 CDL . . . NA 14 159.399 189.019 146.05 1 89.45 ? OA6 CDL 504 N 1 HETATM 12 C CA5 CDL . . . NA 14 160.629 188.692 145.569 1 104.07 ? CA5 CDL 504 N 1 HETATM 13 O OA7 CDL . . . NA 14 161.428 187.926 146.047 1 106.79 ? OA7 CDL 504 N 1 HETATM 14 C C11 CDL . . . NA 14 160.981 189.468 144.328 1 113.76 ? C11 CDL 504 N 1 HETATM 15 C C12 CDL . . . NA 14 162.455 189.732 144.188 1 117.3 ? C12 CDL 504 N 1 HETATM 16 C C13 CDL . . . NA 14 162.782 191.179 143.815 1 123.5 ? C13 CDL 504 N 1 HETATM 17 C C14 CDL . . . NA 14 162.73 191.517 142.318 1 123.25 ? C14 CDL 504 N 1 HETATM 18 C C15 CDL . . . NA 14 162.821 193.003 141.981 1 119.91 ? C15 CDL 504 N 1 HETATM 19 C CA6 CDL . . . NA 14 157.434 188.884 147.524 1 82.72 ? CA6 CDL 504 N 1 HETATM 20 O OA8 CDL . . . NA 14 156.418 187.877 147.333 1 107.95 ? OA8 CDL 504 N 1 HETATM 21 C CA7 CDL . . . NA 14 155.207 188.297 146.957 1 118.74 ? CA7 CDL 504 N 1 HETATM 22 O OA9 CDL . . . NA 14 154.384 187.598 146.408 1 110.54 ? OA9 CDL 504 N 1 HETATM 23 C C31 CDL . . . NA 14 154.984 189.74 147.307 1 128.72 ? C31 CDL 504 N 1 HETATM 24 C CB2 CDL . . . NA 14 156.898 182.564 149.254 1 77.02 ? CB2 CDL 504 N 1 HETATM 25 O OB2 CDL . . . NA 14 155.839 183.476 149.584 1 67.47 ? OB2 CDL 504 N 1 HETATM 26 P PB2 CDL . . . NA 14 154.384 183.151 149.005 1 63.89 ? PB2 CDL 504 N 1 HETATM 27 O OB3 CDL . . . NA 14 153.63 184.439 149.147 1 74.1 ? OB3 CDL 504 N 1 HETATM 28 O OB4 CDL . . . NA 14 153.855 181.878 149.605 1 68.08 ? OB4 CDL 504 N 1 HETATM 29 O OB5 CDL . . . NA 14 154.607 182.768 147.469 1 62.22 ? OB5 CDL 504 N 1 HETATM 30 C CB3 CDL . . . NA 14 154.664 183.809 146.511 1 65.03 ? CB3 CDL 504 N 1 HETATM 31 C CB4 CDL . . . NA 14 155.498 183.183 145.433 1 79.13 ? CB4 CDL 504 N 1 HETATM 32 O OB6 CDL . . . NA 14 156.213 184.284 144.827 1 96.88 ? OB6 CDL 504 N 1 HETATM 33 C CB5 CDL . . . NA 14 157.379 184.647 145.372 1 110.33 ? CB5 CDL 504 N 1 HETATM 34 O OB7 CDL . . . NA 14 157.491 185.003 146.529 1 118.95 ? OB7 CDL 504 N 1 HETATM 35 C C51 CDL . . . NA 14 158.444 184.524 144.303 1 117.1 ? C51 CDL 504 N 1 HETATM 36 C C52 CDL . . . NA 14 159.848 184.768 144.778 1 125.41 ? C52 CDL 504 N 1 HETATM 37 C C53 CDL . . . NA 14 160.899 184.043 143.935 1 126.58 ? C53 CDL 504 N 1 HETATM 38 C C54 CDL . . . NA 14 162.135 184.854 143.635 1 120.66 ? C54 CDL 504 N 1 HETATM 39 C CB6 CDL . . . NA 14 154.659 182.462 144.409 1 97.9 ? CB6 CDL 504 N 1 HETATM 40 O OB8 CDL . . . NA 14 155.461 181.45 143.76 1 113.4 ? OB8 CDL 504 N 1 HETATM 41 C CB7 CDL . . . NA 14 154.971 180.208 143.7 1 128.96 ? CB7 CDL 504 N 1 HETATM 42 O OB9 CDL . . . NA 14 155.518 179.247 144.175 1 150.29 ? OB9 CDL 504 N 1 HETATM 43 C C71 CDL . . . NA 14 153.735 180.117 142.858 1 117.33 ? C71 CDL 504 N 1 HETATM 44 C C72 CDL . . . NA 14 154.032 179.634 141.478 1 105.88 ? C72 CDL 504 N 1 HETATM 45 C C73 CDL . . . NA 14 152.978 178.677 140.97 1 103.18 ? C73 CDL 504 N 1 HETATM 46 C C74 CDL . . . NA 14 152.287 179.145 139.708 1 108.97 ? C74 CDL 504 N 1 HETATM 47 C C75 CDL . . . NA 14 151.735 178.037 138.833 1 109.18 ? C75 CDL 504 N 1 HETATM 48 C C76 CDL . . . NA 14 151.985 178.229 137.358 1 111.98 ? C76 CDL 504 N 1 HETATM 49 C C77 CDL . . . NA 14 152.925 177.22 136.763 1 112.14 ? C77 CDL 504 N 1 HETATM 50 C C78 CDL . . . NA 14 154.289 177.779 136.449 1 114.62 ? C78 CDL 504 N 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #