data_8ACW # _model_server_result.job_id p5aKfmglXYlwWA5BSBSQbg _model_server_result.datetime_utc '2025-01-11 15:52:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8acw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1000}' # _entry.id 8ACW # _exptl.entry_id 8ACW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.93 _cell.angle_gamma 90 _cell.entry_id 8ACW _cell.length_a 93.72 _cell.length_b 142.94 _cell.length_c 103.39 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ACW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 K P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? metalc ? metalc1 B O ILE 371 B ILE 371 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.362 ? metalc ? metalc2 B O ARG 372 B ARG 372 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 B O ASN 375 B ASN 375 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc4 B O TYR 378 B TYR 378 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc5 D SG CYS 29 D CYS 29 1_555 O FE2 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 D SG CYS 112 D CYS 112 1_555 O FE1 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 E SG CYS 26 E CYS 26 1_555 O FE1 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 E SG CYS 120 E CYS 120 1_555 O FE2 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 F SG CYS 70 F CYS 70 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 F SG CYS 76 F CYS 76 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 F SG CYS 79 F CYS 79 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 F SG CYS 111 F CYS 111 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 178 n n N1 C10 FMN doub 179 n n C2 O2 FMN doub 180 n n C2 N3 FMN sing 181 n n N3 C4 FMN sing 182 n n N3 HN3 FMN sing 183 n n C4 O4 FMN doub 184 n n C4 C4A FMN sing 185 n n C4A N5 FMN doub 186 n n C4A C10 FMN sing 187 n n N5 C5A FMN sing 188 n n C5A C6 FMN doub 189 n y C5A C9A FMN sing 190 n y C6 C7 FMN sing 191 n y C6 H6 FMN sing 192 n n C7 C7M FMN sing 193 n n C7 C8 FMN doub 194 n y C7M HM71 FMN sing 195 n n C7M HM72 FMN sing 196 n n C7M HM73 FMN sing 197 n n C8 C8M FMN sing 198 n n C8 C9 FMN sing 199 n y C8M HM81 FMN sing 200 n n C8M HM82 FMN sing 201 n n C8M HM83 FMN sing 202 n n C9 C9A FMN doub 203 n y C9 H9 FMN sing 204 n n C9A N10 FMN sing 205 n n N10 C10 FMN sing 206 n n N10 C1' FMN sing 207 n n C1' C2' FMN sing 208 n n C1' "H1'1" FMN sing 209 n n C1' "H1'2" FMN sing 210 n n C2' O2' FMN sing 211 n n C2' C3' FMN sing 212 n n C2' H2' FMN sing 213 n n O2' HO2' FMN sing 214 n n C3' O3' FMN sing 215 n n C3' C4' FMN sing 216 n n C3' H3' FMN sing 217 n n O3' HO3' FMN sing 218 n n C4' O4' FMN sing 219 n n C4' C5' FMN sing 220 n n C4' H4' FMN sing 221 n n O4' HO4' FMN sing 222 n n C5' O5' FMN sing 223 n n C5' "H5'1" FMN sing 224 n n C5' "H5'2" FMN sing 225 n n O5' P FMN sing 226 n n P O1P FMN doub 227 n n P O2P FMN sing 228 n n P O3P FMN sing 229 n n O2P HOP2 FMN sing 230 n n O3P HOP3 FMN sing 231 n n # _atom_sites.entry_id 8ACW _atom_sites.fract_transf_matrix[1][1] 0.01067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003869 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 605 LMT LMT . J 10 K B 1 504 1 K K . K 7 FMN C 1 1000 1000 FMN FMN . L 9 LMT D 1 301 604 LMT LMT . M 11 LYS D 1 302 209 LYS LYS . N 9 LMT E 1 201 603 LMT LMT . O 12 FES E 1 202 1001 FES FES . P 13 FAD F 1 1501 1501 FAD FAD . Q 12 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . K 7 15.282 23.277 -18.418 1 161.91 ? N1 FMN 1000 C 1 HETATM 2 C C2 FMN . . . K 7 16.209 24.102 -17.815 1 167.75 ? C2 FMN 1000 C 1 HETATM 3 O O2 FMN . . . K 7 16.296 24.153 -16.589 1 188.81 ? O2 FMN 1000 C 1 HETATM 4 N N3 FMN . . . K 7 17.053 24.873 -18.586 1 168.82 ? N3 FMN 1000 C 1 HETATM 5 C C4 FMN . . . K 7 16.977 24.841 -19.962 1 211.93 ? C4 FMN 1000 C 1 HETATM 6 O O4 FMN . . . K 7 17.744 25.535 -20.633 1 212.76 ? O4 FMN 1000 C 1 HETATM 7 C C4A FMN . . . K 7 16.034 24.023 -20.576 1 214.73 ? C4A FMN 1000 C 1 HETATM 8 N N5 FMN . . . K 7 15.98 23.959 -21.952 1 245.25 ? N5 FMN 1000 C 1 HETATM 9 C C5A FMN . . . K 7 15.063 23.145 -22.57 1 195.55 ? C5A FMN 1000 C 1 HETATM 10 C C6 FMN . . . K 7 15.004 23.115 -23.961 1 207.21 ? C6 FMN 1000 C 1 HETATM 11 C C7 FMN . . . K 7 14.085 22.29 -24.598 1 179.09 ? C7 FMN 1000 C 1 HETATM 12 C C7M FMN . . . K 7 14.012 22.251 -26.098 1 154.3 ? C7M FMN 1000 C 1 HETATM 13 C C8 FMN . . . K 7 13.232 21.507 -23.825 1 173.94 ? C8 FMN 1000 C 1 HETATM 14 C C8M FMN . . . K 7 12.214 20.601 -24.441 1 150.29 ? C8M FMN 1000 C 1 HETATM 15 C C9 FMN . . . K 7 13.304 21.545 -22.45 1 182.52 ? C9 FMN 1000 C 1 HETATM 16 C C9A FMN . . . K 7 14.213 22.361 -21.795 1 170.24 ? C9A FMN 1000 C 1 HETATM 17 N N10 FMN . . . K 7 14.285 22.378 -20.403 1 178.4 ? N10 FMN 1000 C 1 HETATM 18 C C10 FMN . . . K 7 15.189 23.231 -19.795 1 178.95 ? C10 FMN 1000 C 1 HETATM 19 C C1' FMN . . . K 7 13.315 21.526 -19.613 1 202.66 ? C1' FMN 1000 C 1 HETATM 20 C C2' FMN . . . K 7 13.958 20.388 -18.818 1 203.26 ? C2' FMN 1000 C 1 HETATM 21 O O2' FMN . . . K 7 14.241 19.298 -19.668 1 166.18 ? O2' FMN 1000 C 1 HETATM 22 C C3' FMN . . . K 7 12.998 19.923 -17.713 1 188.37 ? C3' FMN 1000 C 1 HETATM 23 O O3' FMN . . . K 7 11.752 19.584 -18.289 1 152.14 ? O3' FMN 1000 C 1 HETATM 24 C C4' FMN . . . K 7 12.813 20.946 -16.6 1 201.99 ? C4' FMN 1000 C 1 HETATM 25 O O4' FMN . . . K 7 14.073 21.362 -16.121 1 222.11 ? O4' FMN 1000 C 1 HETATM 26 C C5' FMN . . . K 7 11.983 20.405 -15.438 1 165.52 ? C5' FMN 1000 C 1 HETATM 27 O O5' FMN . . . K 7 12.055 21.344 -14.39 1 203.75 ? O5' FMN 1000 C 1 HETATM 28 P P FMN . . . K 7 11.155 21.213 -13.065 1 177.09 ? P FMN 1000 C 1 HETATM 29 O O1P FMN . . . K 7 11.055 19.765 -12.649 1 153.68 ? O1P FMN 1000 C 1 HETATM 30 O O2P FMN . . . K 7 9.797 21.833 -13.274 1 198.4 ? O2P FMN 1000 C 1 HETATM 31 H HN3 FMN . . . K 7 17.754 25.486 -18.124 1 202.91 ? HN3 FMN 1000 C 1 HETATM 32 H H6 FMN . . . K 7 15.678 23.737 -24.549 1 248.97 ? H6 FMN 1000 C 1 HETATM 33 H HM71 FMN . . . K 7 13.686 21.262 -26.42 1 185.49 ? HM71 FMN 1000 C 1 HETATM 34 H HM72 FMN . . . K 7 14.997 22.463 -26.515 1 185.49 ? HM72 FMN 1000 C 1 HETATM 35 H HM73 FMN . . . K 7 13.301 22.999 -26.447 1 185.49 ? HM73 FMN 1000 C 1 HETATM 36 H HM81 FMN . . . K 7 11.577 20.185 -23.66 1 180.67 ? HM81 FMN 1000 C 1 HETATM 37 H HM82 FMN . . . K 7 12.719 19.791 -24.968 1 180.67 ? HM82 FMN 1000 C 1 HETATM 38 H HM83 FMN . . . K 7 11.603 21.166 -25.145 1 180.67 ? HM83 FMN 1000 C 1 HETATM 39 H H9 FMN . . . K 7 12.63 20.92 -21.865 1 219.35 ? H9 FMN 1000 C 1 HETATM 40 H "H1'1" FMN . . . K 7 12.59 21.097 -20.304 1 243.51 ? "H1'1" FMN 1000 C 1 HETATM 41 H "H1'2" FMN . . . K 7 12.776 22.17 -18.919 1 243.51 ? "H1'2" FMN 1000 C 1 HETATM 42 H H2' FMN . . . K 7 14.888 20.749 -18.378 1 244.24 ? H2' FMN 1000 C 1 HETATM 43 H HO2' FMN . . . K 7 13.895 18.473 -19.266 1 199.74 ? HO2' FMN 1000 C 1 HETATM 44 H H3' FMN . . . K 7 13.444 19.046 -17.243 1 226.37 ? H3' FMN 1000 C 1 HETATM 45 H HO3' FMN . . . K 7 11.046 20.132 -17.887 1 182.89 ? HO3' FMN 1000 C 1 HETATM 46 H H4' FMN . . . K 7 12.274 21.792 -17.025 1 242.71 ? H4' FMN 1000 C 1 HETATM 47 H HO4' FMN . . . K 7 14.034 21.464 -15.147 1 266.85 ? HO4' FMN 1000 C 1 HETATM 48 H "H5'1" FMN . . . K 7 12.372 19.441 -15.111 1 198.95 ? "H5'1" FMN 1000 C 1 HETATM 49 H "H5'2" FMN . . . K 7 10.947 20.261 -15.747 1 198.95 ? "H5'2" FMN 1000 C 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 576 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 49 #