data_8ACW # _model_server_result.job_id G5T89rNiOzhrZDYt2fw2nw _model_server_result.datetime_utc '2025-01-11 15:52:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8acw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 8ACW # _exptl.entry_id 8ACW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.364 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.93 _cell.angle_gamma 90 _cell.entry_id 8ACW _cell.length_a 93.72 _cell.length_b 142.94 _cell.length_c 103.39 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ACW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 K P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? metalc ? metalc1 B O ILE 371 B ILE 371 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.362 ? metalc ? metalc2 B O ARG 372 B ARG 372 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc3 B O ASN 375 B ASN 375 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc4 B O TYR 378 B TYR 378 1_555 J K K . B K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc5 D SG CYS 29 D CYS 29 1_555 O FE2 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 D SG CYS 112 D CYS 112 1_555 O FE1 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 E SG CYS 26 E CYS 26 1_555 O FE1 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc8 E SG CYS 120 E CYS 120 1_555 O FE2 FES . E FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 F SG CYS 70 F CYS 70 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 F SG CYS 76 F CYS 76 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 F SG CYS 79 F CYS 79 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 F SG CYS 111 F CYS 111 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 506 n n N1 C10 RBF doub 507 n n C2 O2 RBF doub 508 n n C2 N3 RBF sing 509 n n N3 C4 RBF sing 510 n n N3 HN3 RBF sing 511 n n C4 O4 RBF doub 512 n n C4 C4A RBF sing 513 n n C4A N5 RBF doub 514 n n C4A C10 RBF sing 515 n n N5 C5A RBF sing 516 n n C5A C6 RBF doub 517 n y C5A C9A RBF sing 518 n y C6 C7 RBF sing 519 n y C6 HC6 RBF sing 520 n n C7 C7M RBF sing 521 n n C7 C8 RBF doub 522 n y C7M HC71 RBF sing 523 n n C7M HC72 RBF sing 524 n n C7M HC73 RBF sing 525 n n C8 C8M RBF sing 526 n n C8 C9 RBF sing 527 n y C8M HC81 RBF sing 528 n n C8M HC82 RBF sing 529 n n C8M HC83 RBF sing 530 n n C9 C9A RBF doub 531 n y C9 HC9 RBF sing 532 n n C9A N10 RBF sing 533 n n N10 C10 RBF sing 534 n n N10 C1' RBF sing 535 n n C1' C2' RBF sing 536 n n C1' HC11 RBF sing 537 n n C1' HC12 RBF sing 538 n n C2' O2' RBF sing 539 n n C2' C3' RBF sing 540 n n C2' HC2' RBF sing 541 n n O2' HO2' RBF sing 542 n n C3' O3' RBF sing 543 n n C3' C4' RBF sing 544 n n C3' HC3' RBF sing 545 n n O3' HO3' RBF sing 546 n n C4' O4' RBF sing 547 n n C4' C5' RBF sing 548 n n C4' HC4' RBF sing 549 n n O4' HO4' RBF sing 550 n n C5' O5' RBF sing 551 n n C5' HC51 RBF sing 552 n n C5' HC52 RBF sing 553 n n O5' HO5' RBF sing 554 n n # _atom_sites.entry_id 8ACW _atom_sites.fract_transf_matrix[1][1] 0.01067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003869 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 605 LMT LMT . J 10 K B 1 504 1 K K . K 7 FMN C 1 1000 1000 FMN FMN . L 9 LMT D 1 301 604 LMT LMT . M 11 LYS D 1 302 209 LYS LYS . N 9 LMT E 1 201 603 LMT LMT . O 12 FES E 1 202 1001 FES FES . P 13 FAD F 1 1501 1501 FAD FAD . Q 12 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . H 8 -14.772 11.385 -11.428 1 189.37 ? N1 RBF 502 B 1 HETATM 2 C C2 RBF . . . H 8 -13.74 12.197 -11.103 1 192.24 ? C2 RBF 502 B 1 HETATM 3 O O2 RBF . . . H 8 -13.572 13.274 -11.682 1 186.13 ? O2 RBF 502 B 1 HETATM 4 N N3 RBF . . . H 8 -12.846 11.871 -10.134 1 193.33 ? N3 RBF 502 B 1 HETATM 5 C C4 RBF . . . H 8 -12.939 10.697 -9.428 1 165.48 ? C4 RBF 502 B 1 HETATM 6 O O4 RBF . . . H 8 -12.113 10.445 -8.562 1 173.35 ? O4 RBF 502 B 1 HETATM 7 C C4A RBF . . . H 8 -14.001 9.825 -9.735 1 155.52 ? C4A RBF 502 B 1 HETATM 8 N N5 RBF . . . H 8 -14.102 8.706 -9.067 1 144.93 ? N5 RBF 502 B 1 HETATM 9 C C5A RBF . . . H 8 -15.141 7.874 -9.384 1 156.66 ? C5A RBF 502 B 1 HETATM 10 C C6 RBF . . . H 8 -15.263 6.667 -8.675 1 150 ? C6 RBF 502 B 1 HETATM 11 C C7 RBF . . . H 8 -16.276 5.777 -8.936 1 164.81 ? C7 RBF 502 B 1 HETATM 12 C C7M RBF . . . H 8 -16.363 4.494 -8.151 1 151.41 ? C7M RBF 502 B 1 HETATM 13 C C8 RBF . . . H 8 -17.231 6.087 -9.948 1 175.17 ? C8 RBF 502 B 1 HETATM 14 C C8M RBF . . . H 8 -18.361 5.143 -10.266 1 142.25 ? C8M RBF 502 B 1 HETATM 15 C C9 RBF . . . H 8 -17.121 7.272 -10.646 1 198.4 ? C9 RBF 502 B 1 HETATM 16 C C9A RBF . . . H 8 -16.084 8.184 -10.385 1 188.16 ? C9A RBF 502 B 1 HETATM 17 N N10 RBF . . . H 8 -15.94 9.388 -11.076 1 189.59 ? N10 RBF 502 B 1 HETATM 18 C C10 RBF . . . H 8 -14.902 10.25 -10.773 1 167.82 ? C10 RBF 502 B 1 HETATM 19 C C1' RBF . . . H 8 -16.906 9.753 -12.129 1 200.22 ? C1' RBF 502 B 1 HETATM 20 C C2' RBF . . . H 8 -16.499 9.205 -13.489 1 184.16 ? C2' RBF 502 B 1 HETATM 21 O O2' RBF . . . H 8 -16.496 7.778 -13.469 1 171 ? O2' RBF 502 B 1 HETATM 22 C C3' RBF . . . H 8 -15.143 9.744 -13.963 1 153.64 ? C3' RBF 502 B 1 HETATM 23 O O3' RBF . . . H 8 -15.238 11.155 -14.142 1 146.6 ? O3' RBF 502 B 1 HETATM 24 C C4' RBF . . . H 8 -14.632 9.074 -15.243 1 166.8 ? C4' RBF 502 B 1 HETATM 25 O O4' RBF . . . H 8 -13.258 9.41 -15.444 1 151.05 ? O4' RBF 502 B 1 HETATM 26 C C5' RBF . . . H 8 -15.46 9.442 -16.456 1 142.67 ? C5' RBF 502 B 1 HETATM 27 O O5' RBF . . . H 8 -16.741 8.814 -16.406 1 205.17 ? O5' RBF 502 B 1 HETATM 28 H HN3 RBF . . . H 8 -12.193 12.434 -9.961 1 232.31 ? HN3 RBF 502 B 1 HETATM 29 H HC6 RBF . . . H 8 -14.623 6.466 -7.996 1 180.32 ? HC6 RBF 502 B 1 HETATM 30 H HC71 RBF . . . H 8 -16.64 3.772 -8.738 1 182.01 ? HC71 RBF 502 B 1 HETATM 31 H HC72 RBF . . . H 8 -15.493 4.287 -7.771 1 182.01 ? HC72 RBF 502 B 1 HETATM 32 H HC73 RBF . . . H 8 -17.011 4.595 -7.435 1 182.01 ? HC73 RBF 502 B 1 HETATM 33 H HC81 RBF . . . H 8 -18.696 5.327 -11.159 1 171.03 ? HC81 RBF 502 B 1 HETATM 34 H HC82 RBF . . . H 8 -19.077 5.264 -9.622 1 171.03 ? HC82 RBF 502 B 1 HETATM 35 H HC83 RBF . . . H 8 -18.041 4.227 -10.224 1 171.03 ? HC83 RBF 502 B 1 HETATM 36 H HC9 RBF . . . H 8 -17.765 7.476 -11.323 1 238.4 ? HC9 RBF 502 B 1 HETATM 37 H HC11 RBF . . . H 8 -17.787 9.404 -11.889 1 240.59 ? HC11 RBF 502 B 1 HETATM 38 H HC12 RBF . . . H 8 -16.972 10.727 -12.178 1 240.59 ? HC12 RBF 502 B 1 HETATM 39 H HC2' RBF . . . H 8 -17.175 9.498 -14.153 1 221.31 ? HC2' RBF 502 B 1 HETATM 40 H HO2' RBF . . . H 8 -17.293 7.497 -13.396 1 205.52 ? HO2' RBF 502 B 1 HETATM 41 H HC3' RBF . . . H 8 -14.466 9.584 -13.256 1 184.69 ? HC3' RBF 502 B 1 HETATM 42 H HC4' RBF . . . H 8 -14.692 8.077 -15.138 1 200.48 ? HC4' RBF 502 B 1 HETATM 43 H HO4' RBF . . . H 8 -12.944 9.02 -16.129 1 181.58 ? HO4' RBF 502 B 1 HETATM 44 H HC51 RBF . . . H 8 -15.576 10.422 -16.489 1 171.52 ? HC51 RBF 502 B 1 HETATM 45 H HC52 RBF . . . H 8 -14.986 9.157 -17.275 1 171.52 ? HC52 RBF 502 B 1 HETATM 46 H HO5' RBF . . . H 8 -17.172 9.035 -17.099 1 246.52 ? HO5' RBF 502 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #