data_8ACY # _model_server_result.job_id Q1pQkjNuI8ITVnkOePT-Bg _model_server_result.datetime_utc '2024-12-26 11:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8acy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 8ACY # _exptl.entry_id 8ACY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.98 _cell.angle_gamma 90 _cell.entry_id 8ACY _cell.length_a 95.27 _cell.length_b 143.32 _cell.length_c 104.37 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ACY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 L P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? metalc ? metalc1 B O ILE 371 B ILE 371 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 B O ARG 372 B ARG 372 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc3 B O ASN 375 B ASN 375 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 B O TYR 378 B TYR 378 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc5 D SG CYS 29 D CYS 29 1_555 N FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 D SG CYS 112 D CYS 112 1_555 N FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc7 E SG CYS 26 E CYS 26 1_555 N FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 E SG CYS 120 E CYS 120 1_555 N FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 F SG CYS 70 F CYS 70 1_555 P FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc10 F SG CYS 76 F CYS 76 1_555 P FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 F SG CYS 79 F CYS 79 1_555 P FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 F SG CYS 111 F CYS 111 1_555 P FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 341 n n C1B O1B LMT sing 342 n n C1B O5B LMT sing 343 n n C1B H1B LMT sing 344 n n C2B C3B LMT sing 345 n n C2B O2B LMT sing 346 n n C2B H2B LMT sing 347 n n C3B C4B LMT sing 348 n n C3B O3B LMT sing 349 n n C3B H3B LMT sing 350 n n C4B C5B LMT sing 351 n n C4B O4' LMT sing 352 n n C4B H4B LMT sing 353 n n C5B C6B LMT sing 354 n n C5B O5B LMT sing 355 n n C5B H5B LMT sing 356 n n C6B O6B LMT sing 357 n n C6B "H6'2" LMT sing 358 n n C6B "H6'1" LMT sing 359 n n O1B C4' LMT sing 360 n n O2B H2O1 LMT sing 361 n n O3B H3O1 LMT sing 362 n n O4' H4O1 LMT sing 363 n n O6B H6B LMT sing 364 n n C1' C2' LMT sing 365 n n C1' O1' LMT sing 366 n n C1' O5' LMT sing 367 n n C1' H1' LMT sing 368 n n C2' C3' LMT sing 369 n n C2' O2' LMT sing 370 n n C2' H2' LMT sing 371 n n C3' C4' LMT sing 372 n n C3' O3' LMT sing 373 n n C3' H3' LMT sing 374 n n C4' C5' LMT sing 375 n n C4' H4' LMT sing 376 n n C5' C6' LMT sing 377 n n C5' O5' LMT sing 378 n n C5' H5' LMT sing 379 n n C6' O6' LMT sing 380 n n C6' H6D LMT sing 381 n n C6' H6E LMT sing 382 n n O1' C1 LMT sing 383 n n O2' H2O2 LMT sing 384 n n O3' H3O2 LMT sing 385 n n O6' H6' LMT sing 386 n n C1 C2 LMT sing 387 n n C1 H12 LMT sing 388 n n C1 H11 LMT sing 389 n n C2 C3 LMT sing 390 n n C2 H22 LMT sing 391 n n C2 H21 LMT sing 392 n n C3 C4 LMT sing 393 n n C3 H32 LMT sing 394 n n C3 H31 LMT sing 395 n n C4 C5 LMT sing 396 n n C4 H42 LMT sing 397 n n C4 H41 LMT sing 398 n n C5 C6 LMT sing 399 n n C5 H52 LMT sing 400 n n C5 H51 LMT sing 401 n n C6 C7 LMT sing 402 n n C6 H62 LMT sing 403 n n C6 H61 LMT sing 404 n n C7 C8 LMT sing 405 n n C7 H72 LMT sing 406 n n C7 H71 LMT sing 407 n n C8 C9 LMT sing 408 n n C8 H82 LMT sing 409 n n C8 H81 LMT sing 410 n n C9 C10 LMT sing 411 n n C9 H92 LMT sing 412 n n C9 H91 LMT sing 413 n n C10 C11 LMT sing 414 n n C10 H102 LMT sing 415 n n C10 H101 LMT sing 416 n n C11 C12 LMT sing 417 n n C11 H112 LMT sing 418 n n C11 H111 LMT sing 419 n n C12 H123 LMT sing 420 n n C12 H122 LMT sing 421 n n C12 H121 LMT sing 422 n n # _atom_sites.entry_id 8ACY _atom_sites.fract_transf_matrix[1][1] 0.010496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004025 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 603 LMT LMT . J 9 LMT B 1 504 605 LMT LMT . K 10 NA B 1 505 1 NA NA . L 7 FMN C 1 1000 1000 FMN FMN . M 9 LMT D 1 301 604 LMT LMT . N 11 FES E 1 1001 1001 FES FES . O 12 FAD F 1 1501 1501 FAD FAD . P 11 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . J 9 8.593 0.68 13.1 1 181.99 ? C1B LMT 504 B 1 HETATM 2 C C2B LMT . . . J 9 8.451 1.763 12.015 1 178.59 ? C2B LMT 504 B 1 HETATM 3 C C3B LMT . . . J 9 9.421 2.885 12.39 1 176.43 ? C3B LMT 504 B 1 HETATM 4 C C4B LMT . . . J 9 10.817 2.284 12.706 1 177.59 ? C4B LMT 504 B 1 HETATM 5 C C5B LMT . . . J 9 10.848 0.783 12.375 1 168.83 ? C5B LMT 504 B 1 HETATM 6 C C6B LMT . . . J 9 12.218 0.186 12.752 1 175.02 ? C6B LMT 504 B 1 HETATM 7 O O1B LMT . . . J 9 7.523 -0.205 13.053 1 193.33 ? O1B LMT 504 B 1 HETATM 8 O O2B LMT . . . J 9 8.777 1.24 10.804 1 196.92 ? O2B LMT 504 B 1 HETATM 9 O O3B LMT . . . J 9 8.911 3.629 13.415 1 184.35 ? O3B LMT 504 B 1 HETATM 10 O O4' LMT . . . J 9 11.772 2.916 11.921 1 178.75 ? O4' LMT 504 B 1 HETATM 11 O O5B LMT . . . J 9 9.824 0.02 12.983 1 174.74 ? O5B LMT 504 B 1 HETATM 12 O O6B LMT . . . J 9 12.937 -0.062 11.63 1 171.07 ? O6B LMT 504 B 1 HETATM 13 C C1' LMT . . . J 9 6.087 -3.009 10.395 1 187.54 ? C1' LMT 504 B 1 HETATM 14 C C2' LMT . . . J 9 7.487 -2.49 10.11 1 177.22 ? C2' LMT 504 B 1 HETATM 15 C C3' LMT . . . J 9 8.038 -1.765 11.346 1 177.01 ? C3' LMT 504 B 1 HETATM 16 C C4' LMT . . . J 9 7.067 -0.685 11.801 1 182.36 ? C4' LMT 504 B 1 HETATM 17 C C5' LMT . . . J 9 5.703 -1.344 12.037 1 180.67 ? C5' LMT 504 B 1 HETATM 18 C C6' LMT . . . J 9 4.69 -0.292 12.471 1 176.47 ? C6' LMT 504 B 1 HETATM 19 O O1' LMT . . . J 9 5.451 -3.252 9.209 1 195.77 ? O1' LMT 504 B 1 HETATM 20 O O2' LMT . . . J 9 8.273 -3.566 9.885 1 178.57 ? O2' LMT 504 B 1 HETATM 21 O O3' LMT . . . J 9 9.227 -1.185 11.058 1 173.84 ? O3' LMT 504 B 1 HETATM 22 O O5' LMT . . . J 9 5.217 -2.01 10.927 1 192.8 ? O5' LMT 504 B 1 HETATM 23 O O6' LMT . . . J 9 3.555 -0.961 12.762 1 175.89 ? O6' LMT 504 B 1 HETATM 24 C C1 LMT . . . J 9 4.067 -3.506 9.275 1 179.05 ? C1 LMT 504 B 1 HETATM 25 C C2 LMT . . . J 9 3.811 -4.512 8.173 1 161.64 ? C2 LMT 504 B 1 HETATM 26 C C3 LMT . . . J 9 2.452 -4.601 7.509 1 154.66 ? C3 LMT 504 B 1 HETATM 27 C C4 LMT . . . J 9 1.392 -4.842 8.56 1 149.09 ? C4 LMT 504 B 1 HETATM 28 C C5 LMT . . . J 9 0.139 -5.407 7.96 1 152.58 ? C5 LMT 504 B 1 HETATM 29 C C6 LMT . . . J 9 -0.993 -4.484 7.599 1 153.64 ? C6 LMT 504 B 1 HETATM 30 C C7 LMT . . . J 9 -2.011 -5.362 6.889 1 162.32 ? C7 LMT 504 B 1 HETATM 31 C C8 LMT . . . J 9 -3.403 -4.812 6.974 1 157.53 ? C8 LMT 504 B 1 HETATM 32 C C9 LMT . . . J 9 -4.565 -5.767 6.715 1 171.39 ? C9 LMT 504 B 1 HETATM 33 C C10 LMT . . . J 9 -4.117 -7.108 6.166 1 174.35 ? C10 LMT 504 B 1 HETATM 34 C C11 LMT . . . J 9 -5.114 -7.693 5.199 1 158.83 ? C11 LMT 504 B 1 HETATM 35 C C12 LMT . . . J 9 -4.615 -8.966 4.595 1 153.58 ? C12 LMT 504 B 1 HETATM 36 H H1B LMT . . . J 9 8.639 1.139 13.953 1 218.38 ? H1B LMT 504 B 1 HETATM 37 H H2B LMT . . . J 9 7.535 2.08 12.025 1 214.31 ? H2B LMT 504 B 1 HETATM 38 H H3B LMT . . . J 9 9.52 3.469 11.622 1 211.72 ? H3B LMT 504 B 1 HETATM 39 H H4B LMT . . . J 9 10.946 2.341 13.666 1 213.11 ? H4B LMT 504 B 1 HETATM 40 H H5B LMT . . . J 9 10.729 0.735 11.414 1 202.59 ? H5B LMT 504 B 1 HETATM 41 H "H6'2" LMT . . . J 9 12.074 -0.598 13.304 1 210.02 ? "H6'2" LMT 504 B 1 HETATM 42 H "H6'1" LMT . . . J 9 12.659 0.787 13.372 1 210.02 ? "H6'1" LMT 504 B 1 HETATM 43 H H2O1 LMT . . . J 9 8.127 1.41 10.289 1 236.3 ? H2O1 LMT 504 B 1 HETATM 44 H H3O1 LMT . . . J 9 9.522 4.153 13.662 1 221.23 ? H3O1 LMT 504 B 1 HETATM 45 H H4O1 LMT . . . J 9 12.518 2.818 12.306 1 214.5 ? H4O1 LMT 504 B 1 HETATM 46 H H6B LMT . . . J 9 13.627 -0.47 11.905 1 205.28 ? H6B LMT 504 B 1 HETATM 47 H H1' LMT . . . J 9 6.221 -3.734 11.026 1 225.04 ? H1' LMT 504 B 1 HETATM 48 H H2' LMT . . . J 9 7.431 -1.856 9.378 1 212.66 ? H2' LMT 504 B 1 HETATM 49 H H3' LMT . . . J 9 8.081 -2.425 12.055 1 212.41 ? H3' LMT 504 B 1 HETATM 50 H H4' LMT . . . J 9 6.984 -0.027 11.093 1 218.84 ? H4' LMT 504 B 1 HETATM 51 H H5' LMT . . . J 9 5.846 -2.002 12.735 1 216.81 ? H5' LMT 504 B 1 HETATM 52 H H6D LMT . . . J 9 4.597 0.374 11.773 1 211.77 ? H6D LMT 504 B 1 HETATM 53 H H6E LMT . . . J 9 5.054 0.223 13.207 1 211.77 ? H6E LMT 504 B 1 HETATM 54 H H2O2 LMT . . . J 9 9.061 -3.304 10.026 1 214.28 ? H2O2 LMT 504 B 1 HETATM 55 H H3O2 LMT . . . J 9 9.084 -0.752 10.345 1 208.61 ? H3O2 LMT 504 B 1 HETATM 56 H H6' LMT . . . J 9 3.082 -0.411 13.2 1 211.07 ? H6' LMT 504 B 1 HETATM 57 H H12 LMT . . . J 9 3.552 -2.691 9.169 1 214.86 ? H12 LMT 504 B 1 HETATM 58 H H11 LMT . . . J 9 3.808 -3.832 10.151 1 214.86 ? H11 LMT 504 B 1 HETATM 59 H H22 LMT . . . J 9 4.019 -5.389 8.531 1 193.96 ? H22 LMT 504 B 1 HETATM 60 H H21 LMT . . . J 9 4.466 -4.348 7.477 1 193.96 ? H21 LMT 504 B 1 HETATM 61 H H32 LMT . . . J 9 2.426 -5.315 6.853 1 185.59 ? H32 LMT 504 B 1 HETATM 62 H H31 LMT . . . J 9 2.244 -3.79 7.019 1 185.59 ? H31 LMT 504 B 1 HETATM 63 H H42 LMT . . . J 9 1.195 -4.015 9.027 1 178.91 ? H42 LMT 504 B 1 HETATM 64 H H41 LMT . . . J 9 1.733 -5.44 9.243 1 178.91 ? H41 LMT 504 B 1 HETATM 65 H H52 LMT . . . J 9 -0.199 -6.074 8.577 1 183.09 ? H52 LMT 504 B 1 HETATM 66 H H51 LMT . . . J 9 0.398 -5.894 7.162 1 183.09 ? H51 LMT 504 B 1 HETATM 67 H H62 LMT . . . J 9 -0.699 -3.751 7.036 1 184.37 ? H62 LMT 504 B 1 HETATM 68 H H61 LMT . . . J 9 -1.375 -4.055 8.381 1 184.37 ? H61 LMT 504 B 1 HETATM 69 H H72 LMT . . . J 9 -1.979 -6.255 7.265 1 194.78 ? H72 LMT 504 B 1 HETATM 70 H H71 LMT . . . J 9 -1.748 -5.467 5.961 1 194.78 ? H71 LMT 504 B 1 HETATM 71 H H82 LMT . . . J 9 -3.48 -4.07 6.355 1 189.03 ? H82 LMT 504 B 1 HETATM 72 H H81 LMT . . . J 9 -3.526 -4.42 7.852 1 189.03 ? H81 LMT 504 B 1 HETATM 73 H H92 LMT . . . J 9 -5.193 -5.354 6.101 1 205.67 ? H92 LMT 504 B 1 HETATM 74 H H91 LMT . . . J 9 -5.065 -5.899 7.535 1 205.67 ? H91 LMT 504 B 1 HETATM 75 H H102 LMT . . . J 9 -3.963 -7.721 6.901 1 209.22 ? H102 LMT 504 B 1 HETATM 76 H H101 LMT . . . J 9 -3.253 -7.008 5.737 1 209.22 ? H101 LMT 504 B 1 HETATM 77 H H112 LMT . . . J 9 -5.302 -7.047 4.5 1 190.6 ? H112 LMT 504 B 1 HETATM 78 H H111 LMT . . . J 9 -5.953 -7.852 5.659 1 190.6 ? H111 LMT 504 B 1 HETATM 79 H H123 LMT . . . J 9 -5.338 -9.48 4.202 1 184.29 ? H123 LMT 504 B 1 HETATM 80 H H122 LMT . . . J 9 -4.186 -9.53 5.257 1 184.29 ? H122 LMT 504 B 1 HETATM 81 H H121 LMT . . . J 9 -3.967 -8.797 3.894 1 184.29 ? H121 LMT 504 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 881 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 81 #