data_8AD0 # _model_server_result.job_id s9ynLMGDpltHm7mxghc_YA _model_server_result.datetime_utc '2024-10-19 13:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ad0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 8AD0 # _exptl.entry_id 8AD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.83 _cell.angle_gamma 90 _cell.entry_id 8AD0 _cell.length_a 89.31 _cell.length_b 142.15 _cell.length_c 105.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 O N N ? 9 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 M P FMN . C FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? metalc ? metalc1 B O VAL 275 B VAL 275 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc2 B O VAL 332 B VAL 332 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc3 D SG CYS 29 D CYS 29 1_555 P FE2 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 D SG CYS 112 D CYS 112 1_555 P FE1 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 P FE1 FES . D FES 302 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 P FE2 FES . D FES 302 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 F SG CYS 70 F CYS 70 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 F SG CYS 76 F CYS 76 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 F SG CYS 79 F CYS 79 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 F SG CYS 111 F CYS 111 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 475 n n C1B O1B LMT sing 476 n n C1B O5B LMT sing 477 n n C1B H1B LMT sing 478 n n C2B C3B LMT sing 479 n n C2B O2B LMT sing 480 n n C2B H2B LMT sing 481 n n C3B C4B LMT sing 482 n n C3B O3B LMT sing 483 n n C3B H3B LMT sing 484 n n C4B C5B LMT sing 485 n n C4B O4' LMT sing 486 n n C4B H4B LMT sing 487 n n C5B C6B LMT sing 488 n n C5B O5B LMT sing 489 n n C5B H5B LMT sing 490 n n C6B O6B LMT sing 491 n n C6B "H6'2" LMT sing 492 n n C6B "H6'1" LMT sing 493 n n O1B C4' LMT sing 494 n n O2B H2O1 LMT sing 495 n n O3B H3O1 LMT sing 496 n n O4' H4O1 LMT sing 497 n n O6B H6B LMT sing 498 n n C1' C2' LMT sing 499 n n C1' O1' LMT sing 500 n n C1' O5' LMT sing 501 n n C1' H1' LMT sing 502 n n C2' C3' LMT sing 503 n n C2' O2' LMT sing 504 n n C2' H2' LMT sing 505 n n C3' C4' LMT sing 506 n n C3' O3' LMT sing 507 n n C3' H3' LMT sing 508 n n C4' C5' LMT sing 509 n n C4' H4' LMT sing 510 n n C5' C6' LMT sing 511 n n C5' O5' LMT sing 512 n n C5' H5' LMT sing 513 n n C6' O6' LMT sing 514 n n C6' H6D LMT sing 515 n n C6' H6E LMT sing 516 n n O1' C1 LMT sing 517 n n O2' H2O2 LMT sing 518 n n O3' H3O2 LMT sing 519 n n O6' H6' LMT sing 520 n n C1 C2 LMT sing 521 n n C1 H12 LMT sing 522 n n C1 H11 LMT sing 523 n n C2 C3 LMT sing 524 n n C2 H22 LMT sing 525 n n C2 H21 LMT sing 526 n n C3 C4 LMT sing 527 n n C3 H32 LMT sing 528 n n C3 H31 LMT sing 529 n n C4 C5 LMT sing 530 n n C4 H42 LMT sing 531 n n C4 H41 LMT sing 532 n n C5 C6 LMT sing 533 n n C5 H52 LMT sing 534 n n C5 H51 LMT sing 535 n n C6 C7 LMT sing 536 n n C6 H62 LMT sing 537 n n C6 H61 LMT sing 538 n n C7 C8 LMT sing 539 n n C7 H72 LMT sing 540 n n C7 H71 LMT sing 541 n n C8 C9 LMT sing 542 n n C8 H82 LMT sing 543 n n C8 H81 LMT sing 544 n n C9 C10 LMT sing 545 n n C9 H92 LMT sing 546 n n C9 H91 LMT sing 547 n n C10 C11 LMT sing 548 n n C10 H102 LMT sing 549 n n C10 H101 LMT sing 550 n n C11 C12 LMT sing 551 n n C11 H112 LMT sing 552 n n C11 H111 LMT sing 553 n n C12 H123 LMT sing 554 n n C12 H122 LMT sing 555 n n C12 H121 LMT sing 556 n n # _atom_sites.entry_id 8AD0 _atom_sites.fract_transf_matrix[1][1] 0.011197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 605 LMT LMT . J 10 3PE B 1 504 608 3PE 3PE . K 11 NA B 1 505 1 NA NA . L 12 K B 1 506 2 K K . M 7 FMN C 1 301 1000 FMN FMN . N 13 BR C 1 302 3 BR BR . O 9 LMT D 1 301 604 LMT LMT . P 14 FES D 1 302 1001 FES FES . Q 9 LMT E 1 201 603 LMT LMT . R 15 FAD F 1 1501 1501 FAD FAD . S 14 FES F 1 1502 1502 FES FES . T 16 HOH A 1 501 5 HOH HOH . U 16 HOH B 1 601 3 HOH HOH . U 16 HOH B 2 602 2 HOH HOH . U 16 HOH B 3 603 4 HOH HOH . V 16 HOH E 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . O 9 23.102 37.433 35.888 1 140.69 ? C1B LMT 301 D 1 HETATM 2 C C2B LMT . . . O 9 24.178 37.708 36.953 1 141.05 ? C2B LMT 301 D 1 HETATM 3 C C3B LMT . . . O 9 23.981 36.748 38.155 1 140.71 ? C3B LMT 301 D 1 HETATM 4 C C4B LMT . . . O 9 22.531 36.897 38.699 1 141.27 ? C4B LMT 301 D 1 HETATM 5 C C5B LMT . . . O 9 21.563 36.628 37.527 1 140.33 ? C5B LMT 301 D 1 HETATM 6 C C6B LMT . . . O 9 20.104 36.799 37.993 1 140.84 ? C6B LMT 301 D 1 HETATM 7 O O1B LMT . . . O 9 23.396 36.199 35.312 1 149.86 ? O1B LMT 301 D 1 HETATM 8 O O2B LMT . . . O 9 25.39 37.519 36.354 1 140.27 ? O2B LMT 301 D 1 HETATM 9 O O3B LMT . . . O 9 24.955 36.926 39.104 1 140.24 ? O3B LMT 301 D 1 HETATM 10 O O4' LMT . . . O 9 22.279 35.994 39.726 1 140.37 ? O4' LMT 301 D 1 HETATM 11 O O5B LMT . . . O 9 21.809 37.464 36.414 1 146.99 ? O5B LMT 301 D 1 HETATM 12 O O6B LMT . . . O 9 19.765 38.135 38.043 1 141.4 ? O6B LMT 301 D 1 HETATM 13 C C1' LMT . . . O 9 24.35 34.479 31.679 1 136.95 ? C1' LMT 301 D 1 HETATM 14 C C2' LMT . . . O 9 25.393 35.494 32.198 1 137.05 ? C2' LMT 301 D 1 HETATM 15 C C3' LMT . . . O 9 25.139 35.698 33.734 1 138.16 ? C3' LMT 301 D 1 HETATM 16 C C4' LMT . . . O 9 23.702 36.198 33.933 1 139.85 ? C4' LMT 301 D 1 HETATM 17 C C5' LMT . . . O 9 22.77 35.168 33.246 1 137.88 ? C5' LMT 301 D 1 HETATM 18 C C6' LMT . . . O 9 21.298 35.511 33.418 1 138.9 ? C6' LMT 301 D 1 HETATM 19 O O1' LMT . . . O 9 24.483 34.248 30.335 1 135.24 ? O1' LMT 301 D 1 HETATM 20 O O2' LMT . . . O 9 26.64 35.035 32.045 1 137.09 ? O2' LMT 301 D 1 HETATM 21 O O3' LMT . . . O 9 26.047 36.548 34.267 1 138.87 ? O3' LMT 301 D 1 HETATM 22 O O5' LMT . . . O 9 23.051 35.047 31.882 1 140.41 ? O5' LMT 301 D 1 HETATM 23 O O6' LMT . . . O 9 21.112 35.806 34.745 1 138.32 ? O6' LMT 301 D 1 HETATM 24 C C1 LMT . . . O 9 25.102 33.023 30.08 1 132.91 ? C1 LMT 301 D 1 HETATM 25 C C2 LMT . . . O 9 24.463 32.364 28.851 1 129.54 ? C2 LMT 301 D 1 HETATM 26 C C3 LMT . . . O 9 24.897 30.934 28.695 1 126.75 ? C3 LMT 301 D 1 HETATM 27 C C4 LMT . . . O 9 26.335 30.934 28.234 1 123.26 ? C4 LMT 301 D 1 HETATM 28 C C5 LMT . . . O 9 26.8 29.598 27.747 1 119.34 ? C5 LMT 301 D 1 HETATM 29 C C6 LMT . . . O 9 25.805 28.699 27.074 1 115.36 ? C6 LMT 301 D 1 HETATM 30 C C7 LMT . . . O 9 26.526 27.399 26.834 1 110.85 ? C7 LMT 301 D 1 HETATM 31 C C8 LMT . . . O 9 25.615 26.324 26.359 1 107.23 ? C8 LMT 301 D 1 HETATM 32 C C9 LMT . . . O 9 26.244 25.564 25.225 1 107.46 ? C9 LMT 301 D 1 HETATM 33 C C10 LMT . . . O 9 27.188 24.548 25.851 1 106.52 ? C10 LMT 301 D 1 HETATM 34 C C11 LMT . . . O 9 27.714 23.533 24.878 1 103.99 ? C11 LMT 301 D 1 HETATM 35 C C12 LMT . . . O 9 26.633 22.615 24.399 1 102.97 ? C12 LMT 301 D 1 HETATM 36 H H1B LMT . . . O 9 23.096 38.177 35.266 1 169.62 ? H1B LMT 301 D 1 HETATM 37 H H2B LMT . . . O 9 24.053 38.611 37.284 1 170.05 ? H2B LMT 301 D 1 HETATM 38 H H3B LMT . . . O 9 24.082 35.84 37.83 1 169.64 ? H3B LMT 301 D 1 HETATM 39 H H4B LMT . . . O 9 22.404 37.82 38.969 1 170.31 ? H4B LMT 301 D 1 HETATM 40 H H5B LMT . . . O 9 21.692 35.703 37.267 1 169.19 ? H5B LMT 301 D 1 HETATM 41 H "H6'2" LMT . . . O 9 19.997 36.34 38.841 1 169.81 ? "H6'2" LMT 301 D 1 HETATM 42 H "H6'1" LMT . . . O 9 19.532 36.275 37.411 1 169.81 ? "H6'1" LMT 301 D 1 HETATM 43 H H2O1 LMT . . . O 9 25.324 37.835 35.567 1 169.11 ? H2O1 LMT 301 D 1 HETATM 44 H H3O1 LMT . . . O 9 25.639 37.258 38.712 1 169.08 ? H3O1 LMT 301 D 1 HETATM 45 H H4O1 LMT . . . O 9 23.026 35.8 40.088 1 169.24 ? H4O1 LMT 301 D 1 HETATM 46 H H6B LMT . . . O 9 20.227 38.513 37.439 1 170.47 ? H6B LMT 301 D 1 HETATM 47 H H1' LMT . . . O 9 24.448 33.663 32.196 1 165.13 ? H1' LMT 301 D 1 HETATM 48 H H2' LMT . . . O 9 25.248 36.318 31.708 1 165.25 ? H2' LMT 301 D 1 HETATM 49 H H3' LMT . . . O 9 25.18 34.829 34.164 1 166.58 ? H3' LMT 301 D 1 HETATM 50 H H4' LMT . . . O 9 23.62 37.063 33.501 1 168.62 ? H4' LMT 301 D 1 HETATM 51 H H5' LMT . . . O 9 22.953 34.328 33.695 1 166.24 ? H5' LMT 301 D 1 HETATM 52 H H6D LMT . . . O 9 20.757 34.775 33.092 1 167.48 ? H6D LMT 301 D 1 HETATM 53 H H6E LMT . . . O 9 21.063 36.23 32.811 1 167.48 ? H6E LMT 301 D 1 HETATM 54 H H2O2 LMT . . . O 9 26.584 34.2 31.998 1 165.29 ? H2O2 LMT 301 D 1 HETATM 55 H H3O2 LMT . . . O 9 26.423 36.928 33.607 1 167.43 ? H3O2 LMT 301 D 1 HETATM 56 H H6' LMT . . . O 9 20.5 36.404 34.766 1 166.78 ? H6' LMT 301 D 1 HETATM 57 H H12 LMT . . . O 9 25.042 32.453 30.863 1 160.29 ? H12 LMT 301 D 1 HETATM 58 H H11 LMT . . . O 9 26.056 33.154 29.96 1 160.29 ? H11 LMT 301 D 1 HETATM 59 H H22 LMT . . . O 9 24.693 32.867 28.055 1 156.24 ? H22 LMT 301 D 1 HETATM 60 H H21 LMT . . . O 9 23.497 32.409 28.923 1 156.24 ? H21 LMT 301 D 1 HETATM 61 H H32 LMT . . . O 9 24.344 30.459 28.055 1 152.89 ? H32 LMT 301 D 1 HETATM 62 H H31 LMT . . . O 9 24.816 30.441 29.526 1 152.89 ? H31 LMT 301 D 1 HETATM 63 H H42 LMT . . . O 9 26.907 31.234 28.957 1 148.7 ? H42 LMT 301 D 1 HETATM 64 H H41 LMT . . . O 9 26.45 31.594 27.532 1 148.7 ? H41 LMT 301 D 1 HETATM 65 H H52 LMT . . . O 9 27.178 29.126 28.505 1 144 ? H52 LMT 301 D 1 HETATM 66 H H51 LMT . . . O 9 27.538 29.75 27.137 1 144 ? H51 LMT 301 D 1 HETATM 67 H H62 LMT . . . O 9 25.476 29.081 26.246 1 139.23 ? H62 LMT 301 D 1 HETATM 68 H H61 LMT . . . O 9 25.011 28.57 27.617 1 139.23 ? H61 LMT 301 D 1 HETATM 69 H H72 LMT . . . O 9 26.971 27.125 27.652 1 133.81 ? H72 LMT 301 D 1 HETATM 70 H H71 LMT . . . O 9 27.239 27.543 26.193 1 133.81 ? H71 LMT 301 D 1 HETATM 71 H H82 LMT . . . O 9 24.765 26.698 26.079 1 129.47 ? H82 LMT 301 D 1 HETATM 72 H H81 LMT . . . O 9 25.396 25.719 27.085 1 129.47 ? H81 LMT 301 D 1 HETATM 73 H H92 LMT . . . O 9 26.716 26.16 24.621 1 129.74 ? H92 LMT 301 D 1 HETATM 74 H H91 LMT . . . O 9 25.572 25.132 24.676 1 129.74 ? H91 LMT 301 D 1 HETATM 75 H H102 LMT . . . O 9 26.731 24.101 26.58 1 128.62 ? H102 LMT 301 D 1 HETATM 76 H H101 LMT . . . O 9 27.926 25.018 26.269 1 128.62 ? H101 LMT 301 D 1 HETATM 77 H H112 LMT . . . O 9 28.421 23.019 25.299 1 125.58 ? H112 LMT 301 D 1 HETATM 78 H H111 LMT . . . O 9 28.119 23.989 24.123 1 125.58 ? H111 LMT 301 D 1 HETATM 79 H H123 LMT . . . O 9 26.998 21.784 24.056 1 124.36 ? H123 LMT 301 D 1 HETATM 80 H H122 LMT . . . O 9 26.113 23.019 23.686 1 124.36 ? H122 LMT 301 D 1 HETATM 81 H H121 LMT . . . O 9 26.017 22.388 25.113 1 124.36 ? H121 LMT 301 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 81 #