data_8AD0
#
_model_server_result.job_id            D_tJbnrU-6DlL6BYYYxR9Q 
_model_server_result.datetime_utc      '2024-10-19 13:24:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ad0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    8AD0 
#
_exptl.entry_id    8AD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.83 
_cell.angle_gamma         90 
_cell.entry_id            8AD0 
_cell.length_a            89.31 
_cell.length_b            142.15 
_cell.length_c            105.93 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? 
covale ? covale2 C OG1 THR 225 C THR 225 1_555 M P FMN . C FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
metalc ? metalc1 B O VAL 275 B VAL 275 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc2 B O VAL 332 B VAL 332 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc3 D SG CYS 29 D CYS 29 1_555 P FE2 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 D SG CYS 112 D CYS 112 1_555 P FE1 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc5 P FE1 FES . D FES 302 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc6 P FE2 FES . D FES 302 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc7 F SG CYS 70 F CYS 70 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc8 F SG CYS 76 F CYS 76 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc9 F SG CYS 79 F CYS 79 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc10 F SG CYS 111 F CYS 111 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 310 n n 
N1 C10 FMN doub 311 n n 
C2 O2 FMN doub 312 n n 
C2 N3 FMN sing 313 n n 
N3 C4 FMN sing 314 n n 
N3 HN3 FMN sing 315 n n 
C4 O4 FMN doub 316 n n 
C4 C4A FMN sing 317 n n 
C4A N5 FMN doub 318 n n 
C4A C10 FMN sing 319 n n 
N5 C5A FMN sing 320 n n 
C5A C6 FMN doub 321 n y 
C5A C9A FMN sing 322 n y 
C6 C7 FMN sing 323 n y 
C6 H6 FMN sing 324 n n 
C7 C7M FMN sing 325 n n 
C7 C8 FMN doub 326 n y 
C7M HM71 FMN sing 327 n n 
C7M HM72 FMN sing 328 n n 
C7M HM73 FMN sing 329 n n 
C8 C8M FMN sing 330 n n 
C8 C9 FMN sing 331 n y 
C8M HM81 FMN sing 332 n n 
C8M HM82 FMN sing 333 n n 
C8M HM83 FMN sing 334 n n 
C9 C9A FMN doub 335 n y 
C9 H9 FMN sing 336 n n 
C9A N10 FMN sing 337 n n 
N10 C10 FMN sing 338 n n 
N10 C1' FMN sing 339 n n 
C1' C2' FMN sing 340 n n 
C1' "H1'1" FMN sing 341 n n 
C1' "H1'2" FMN sing 342 n n 
C2' O2' FMN sing 343 n n 
C2' C3' FMN sing 344 n n 
C2' H2' FMN sing 345 n n 
O2' HO2' FMN sing 346 n n 
C3' O3' FMN sing 347 n n 
C3' C4' FMN sing 348 n n 
C3' H3' FMN sing 349 n n 
O3' HO3' FMN sing 350 n n 
C4' O4' FMN sing 351 n n 
C4' C5' FMN sing 352 n n 
C4' H4' FMN sing 353 n n 
O4' HO4' FMN sing 354 n n 
C5' O5' FMN sing 355 n n 
C5' "H5'1" FMN sing 356 n n 
C5' "H5'2" FMN sing 357 n n 
O5' P FMN sing 358 n n 
P O1P FMN doub 359 n n 
P O2P FMN sing 360 n n 
P O3P FMN sing 361 n n 
O2P HOP2 FMN sing 362 n n 
O3P HOP3 FMN sing 363 n n 
#
_atom_sites.entry_id                     8AD0 
_atom_sites.fract_transf_matrix[1][1]    0.011197 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004038 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 FMN B 1 501 600 FMN FMN . 
H 8 RBF B 1 502 601 RBF RBF . 
I 9 LMT B 1 503 605 LMT LMT . 
J 10 3PE B 1 504 608 3PE 3PE . 
K 11 NA B 1 505 1 NA NA . 
L 12 K B 1 506 2 K K . 
M 7 FMN C 1 301 1000 FMN FMN . 
N 13 BR C 1 302 3 BR BR . 
O 9 LMT D 1 301 604 LMT LMT . 
P 14 FES D 1 302 1001 FES FES . 
Q 9 LMT E 1 201 603 LMT LMT . 
R 15 FAD F 1 1501 1501 FAD FAD . 
S 14 FES F 1 1502 1502 FES FES . 
T 16 HOH A 1 501 5 HOH HOH . 
U 16 HOH B 1 601 3 HOH HOH . 
U 16 HOH B 2 602 2 HOH HOH . 
U 16 HOH B 3 603 4 HOH HOH . 
V 16 HOH E 1 301 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . G 7 30.418 16.206 43.815 1 116.93 ? N1 FMN 501 B 1 
HETATM 2 C C2 FMN . . . G 7 31.611 16.25 43.118 1 116.6 ? C2 FMN 501 B 1 
HETATM 3 O O2 FMN . . . G 7 32.488 17.046 43.46 1 118.28 ? O2 FMN 501 B 1 
HETATM 4 N N3 FMN . . . G 7 31.826 15.406 42.046 1 113.12 ? N3 FMN 501 B 1 
HETATM 5 C C4 FMN . . . G 7 30.838 14.516 41.677 1 112.57 ? C4 FMN 501 B 1 
HETATM 6 O O4 FMN . . . G 7 31.029 13.754 40.727 1 109.84 ? O4 FMN 501 B 1 
HETATM 7 C C4A FMN . . . G 7 29.637 14.474 42.381 1 113.57 ? C4A FMN 501 B 1 
HETATM 8 N N5 FMN . . . G 7 28.652 13.585 42.019 1 112.06 ? N5 FMN 501 B 1 
HETATM 9 C C5A FMN . . . G 7 27.461 13.541 42.704 1 114.21 ? C5A FMN 501 B 1 
HETATM 10 C C6 FMN . . . G 7 26.488 12.636 42.309 1 113.78 ? C6 FMN 501 B 1 
HETATM 11 C C7 FMN . . . G 7 25.283 12.582 42.992 1 116.52 ? C7 FMN 501 B 1 
HETATM 12 C C7M FMN . . . G 7 24.24 11.6 42.564 1 116.08 ? C7M FMN 501 B 1 
HETATM 13 C C8 FMN . . . G 7 25.056 13.428 44.072 1 119.7 ? C8 FMN 501 B 1 
HETATM 14 C C8M FMN . . . G 7 23.757 13.379 44.821 1 122.39 ? C8M FMN 501 B 1 
HETATM 15 C C9 FMN . . . G 7 26.033 14.337 44.469 1 119.05 ? C9 FMN 501 B 1 
HETATM 16 C C9A FMN . . . G 7 27.243 14.396 43.784 1 116.64 ? C9A FMN 501 B 1 
HETATM 17 N N10 FMN . . . G 7 28.238 15.278 44.166 1 116.46 ? N10 FMN 501 B 1 
HETATM 18 C C10 FMN . . . G 7 29.418 15.331 43.447 1 114.95 ? C10 FMN 501 B 1 
HETATM 19 C C1' FMN . . . G 7 28.082 16.244 45.301 1 117.86 ? C1' FMN 501 B 1 
HETATM 20 C C2' FMN . . . G 7 28.615 15.59 46.568 1 119.3 ? C2' FMN 501 B 1 
HETATM 21 O O2' FMN . . . G 7 27.842 14.45 46.886 1 119.49 ? O2' FMN 501 B 1 
HETATM 22 C C3' FMN . . . G 7 28.508 16.531 47.764 1 120.82 ? C3' FMN 501 B 1 
HETATM 23 O O3' FMN . . . G 7 27.219 17.081 47.856 1 121.41 ? O3' FMN 501 B 1 
HETATM 24 C C4' FMN . . . G 7 29.56 17.636 47.592 1 120.95 ? C4' FMN 501 B 1 
HETATM 25 O O4' FMN . . . G 7 30.81 17.119 47.172 1 121.64 ? O4' FMN 501 B 1 
HETATM 26 C C5' FMN . . . G 7 29.719 18.485 48.853 1 125.77 ? C5' FMN 501 B 1 
HETATM 27 O O5' FMN . . . G 7 29.896 17.659 49.982 1 124.23 ? O5' FMN 501 B 1 
HETATM 28 P P FMN . . . G 7 31.358 17.603 50.629 1 137.5 ? P FMN 501 B 1 
HETATM 29 O O1P FMN . . . G 7 31.488 16.317 51.414 1 124.2 ? O1P FMN 501 B 1 
HETATM 30 O O2P FMN . . . G 7 32.443 17.846 49.602 1 135.74 ? O2P FMN 501 B 1 
HETATM 31 H HN3 FMN . . . G 7 32.724 15.441 41.522 1 136.54 ? HN3 FMN 501 B 1 
HETATM 32 H H6 FMN . . . G 7 26.669 11.97 41.466 1 137.32 ? H6 FMN 501 B 1 
HETATM 33 H HM71 FMN . . . G 7 23.717 11.221 43.442 1 140.09 ? HM71 FMN 501 B 1 
HETATM 34 H HM72 FMN . . . G 7 24.714 10.771 42.039 1 140.09 ? HM72 FMN 501 B 1 
HETATM 35 H HM73 FMN . . . G 7 23.528 12.091 41.901 1 140.09 ? HM73 FMN 501 B 1 
HETATM 36 H HM81 FMN . . . G 7 23.724 14.193 45.544 1 147.66 ? HM81 FMN 501 B 1 
HETATM 37 H HM82 FMN . . . G 7 23.675 12.425 45.343 1 147.66 ? HM82 FMN 501 B 1 
HETATM 38 H HM83 FMN . . . G 7 22.93 13.481 44.119 1 147.66 ? HM83 FMN 501 B 1 
HETATM 39 H H9 FMN . . . G 7 25.85 15.001 45.313 1 143.65 ? H9 FMN 501 B 1 
HETATM 40 H "H1'1" FMN . . . G 7 27.032 16.507 45.428 1 142.22 ? "H1'1" FMN 501 B 1 
HETATM 41 H "H1'2" FMN . . . G 7 28.634 17.16 45.092 1 142.22 ? "H1'2" FMN 501 B 1 
HETATM 42 H H2' FMN . . . G 7 29.656 15.328 46.378 1 143.95 ? H2' FMN 501 B 1 
HETATM 43 H HO2' FMN . . . G 7 27.353 14.609 47.721 1 144.18 ? HO2' FMN 501 B 1 
HETATM 44 H H3' FMN . . . G 7 28.684 15.981 48.689 1 145.78 ? H3' FMN 501 B 1 
HETATM 45 H HO3' FMN . . . G 7 27.282 18.058 47.888 1 146.49 ? HO3' FMN 501 B 1 
HETATM 46 H H4' FMN . . . G 7 29.193 18.288 46.8 1 145.93 ? H4' FMN 501 B 1 
HETATM 47 H HO4' FMN . . . G 7 31.503 17.375 47.816 1 146.76 ? HO4' FMN 501 B 1 
HETATM 48 H "H5'1" FMN . . . G 7 28.835 19.108 48.99 1 151.71 ? "H5'1" FMN 501 B 1 
HETATM 49 H "H5'2" FMN . . . G 7 30.58 19.145 48.744 1 151.71 ? "H5'2" FMN 501 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           49 
#