data_8AD0 # _model_server_result.job_id v2y1LibCA526ApwzDKXhRg _model_server_result.datetime_utc '2025-01-11 07:50:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ad0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 8AD0 # _exptl.entry_id 8AD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.83 _cell.angle_gamma 90 _cell.entry_id 8AD0 _cell.length_a 89.31 _cell.length_b 142.15 _cell.length_c 105.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 O N N ? 9 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 M P FMN . C FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? metalc ? metalc1 B O VAL 275 B VAL 275 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc2 B O VAL 332 B VAL 332 1_555 K NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc3 D SG CYS 29 D CYS 29 1_555 P FE2 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 D SG CYS 112 D CYS 112 1_555 P FE1 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 P FE1 FES . D FES 302 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 P FE2 FES . D FES 302 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 F SG CYS 70 F CYS 70 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 F SG CYS 76 F CYS 76 1_555 S FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 F SG CYS 79 F CYS 79 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 F SG CYS 111 F CYS 111 1_555 S FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 475 n n C1B O1B LMT sing 476 n n C1B O5B LMT sing 477 n n C1B H1B LMT sing 478 n n C2B C3B LMT sing 479 n n C2B O2B LMT sing 480 n n C2B H2B LMT sing 481 n n C3B C4B LMT sing 482 n n C3B O3B LMT sing 483 n n C3B H3B LMT sing 484 n n C4B C5B LMT sing 485 n n C4B O4' LMT sing 486 n n C4B H4B LMT sing 487 n n C5B C6B LMT sing 488 n n C5B O5B LMT sing 489 n n C5B H5B LMT sing 490 n n C6B O6B LMT sing 491 n n C6B "H6'2" LMT sing 492 n n C6B "H6'1" LMT sing 493 n n O1B C4' LMT sing 494 n n O2B H2O1 LMT sing 495 n n O3B H3O1 LMT sing 496 n n O4' H4O1 LMT sing 497 n n O6B H6B LMT sing 498 n n C1' C2' LMT sing 499 n n C1' O1' LMT sing 500 n n C1' O5' LMT sing 501 n n C1' H1' LMT sing 502 n n C2' C3' LMT sing 503 n n C2' O2' LMT sing 504 n n C2' H2' LMT sing 505 n n C3' C4' LMT sing 506 n n C3' O3' LMT sing 507 n n C3' H3' LMT sing 508 n n C4' C5' LMT sing 509 n n C4' H4' LMT sing 510 n n C5' C6' LMT sing 511 n n C5' O5' LMT sing 512 n n C5' H5' LMT sing 513 n n C6' O6' LMT sing 514 n n C6' H6D LMT sing 515 n n C6' H6E LMT sing 516 n n O1' C1 LMT sing 517 n n O2' H2O2 LMT sing 518 n n O3' H3O2 LMT sing 519 n n O6' H6' LMT sing 520 n n C1 C2 LMT sing 521 n n C1 H12 LMT sing 522 n n C1 H11 LMT sing 523 n n C2 C3 LMT sing 524 n n C2 H22 LMT sing 525 n n C2 H21 LMT sing 526 n n C3 C4 LMT sing 527 n n C3 H32 LMT sing 528 n n C3 H31 LMT sing 529 n n C4 C5 LMT sing 530 n n C4 H42 LMT sing 531 n n C4 H41 LMT sing 532 n n C5 C6 LMT sing 533 n n C5 H52 LMT sing 534 n n C5 H51 LMT sing 535 n n C6 C7 LMT sing 536 n n C6 H62 LMT sing 537 n n C6 H61 LMT sing 538 n n C7 C8 LMT sing 539 n n C7 H72 LMT sing 540 n n C7 H71 LMT sing 541 n n C8 C9 LMT sing 542 n n C8 H82 LMT sing 543 n n C8 H81 LMT sing 544 n n C9 C10 LMT sing 545 n n C9 H92 LMT sing 546 n n C9 H91 LMT sing 547 n n C10 C11 LMT sing 548 n n C10 H102 LMT sing 549 n n C10 H101 LMT sing 550 n n C11 C12 LMT sing 551 n n C11 H112 LMT sing 552 n n C11 H111 LMT sing 553 n n C12 H123 LMT sing 554 n n C12 H122 LMT sing 555 n n C12 H121 LMT sing 556 n n # _atom_sites.entry_id 8AD0 _atom_sites.fract_transf_matrix[1][1] 0.011197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 605 LMT LMT . J 10 3PE B 1 504 608 3PE 3PE . K 11 NA B 1 505 1 NA NA . L 12 K B 1 506 2 K K . M 7 FMN C 1 301 1000 FMN FMN . N 13 BR C 1 302 3 BR BR . O 9 LMT D 1 301 604 LMT LMT . P 14 FES D 1 302 1001 FES FES . Q 9 LMT E 1 201 603 LMT LMT . R 15 FAD F 1 1501 1501 FAD FAD . S 14 FES F 1 1502 1502 FES FES . T 16 HOH A 1 501 5 HOH HOH . U 16 HOH B 1 601 3 HOH HOH . U 16 HOH B 2 602 2 HOH HOH . U 16 HOH B 3 603 4 HOH HOH . V 16 HOH E 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . I 9 38.969 0.049 59.997 1 146.13 ? C1B LMT 503 B 1 HETATM 2 C C2B LMT . . . I 9 38.739 1.24 59.046 1 145.67 ? C2B LMT 503 B 1 HETATM 3 C C3B LMT . . . I 9 39.915 2.238 59.187 1 140.77 ? C3B LMT 503 B 1 HETATM 4 C C4B LMT . . . I 9 41.255 1.466 59.257 1 141.93 ? C4B LMT 503 B 1 HETATM 5 C C5B LMT . . . I 9 41.058 -0.005 58.874 1 140.63 ? C5B LMT 503 B 1 HETATM 6 C C6B LMT . . . I 9 42.432 -0.719 58.911 1 139 ? C6B LMT 503 B 1 HETATM 7 O O1B LMT . . . I 9 37.833 -0.78 60.054 1 157.15 ? O1B LMT 503 B 1 HETATM 8 O O2B LMT . . . I 9 38.682 0.809 57.75 1 158.21 ? O2B LMT 503 B 1 HETATM 9 O O3B LMT . . . I 9 39.725 3.1 60.247 1 143.6 ? O3B LMT 503 B 1 HETATM 10 O O4' LMT . . . I 9 42.162 1.986 58.344 1 137.3 ? O4' LMT 503 B 1 HETATM 11 O O5B LMT . . . I 9 40.122 -0.682 59.67 1 145.05 ? O5B LMT 503 B 1 HETATM 12 O O6B LMT . . . I 9 42.287 -2.023 58.536 1 139.01 ? O6B LMT 503 B 1 HETATM 13 C C1' LMT . . . I 9 35.864 -3.57 57.603 1 136.92 ? C1' LMT 503 B 1 HETATM 14 C C2' LMT . . . I 9 37.244 -3.124 57.108 1 138.53 ? C2' LMT 503 B 1 HETATM 15 C C3' LMT . . . I 9 38.035 -2.454 58.318 1 141.76 ? C3' LMT 503 B 1 HETATM 16 C C4' LMT . . . I 9 37.252 -1.259 58.859 1 147.52 ? C4' LMT 503 B 1 HETATM 17 C C5' LMT . . . I 9 35.883 -1.852 59.237 1 139.61 ? C5' LMT 503 B 1 HETATM 18 C C6' LMT . . . I 9 34.946 -0.877 59.913 1 137.34 ? C6' LMT 503 B 1 HETATM 19 O O1' LMT . . . I 9 34.922 -4.03 56.703 1 135.35 ? O1' LMT 503 B 1 HETATM 20 O O2' LMT . . . I 9 38.009 -4.175 56.718 1 136.99 ? O2' LMT 503 B 1 HETATM 21 O O3' LMT . . . I 9 39.279 -2.09 57.943 1 141.74 ? O3' LMT 503 B 1 HETATM 22 O O5' LMT . . . I 9 35.212 -2.386 58.158 1 137.68 ? O5' LMT 503 B 1 HETATM 23 O O6' LMT . . . I 9 33.736 -1.517 60.007 1 134.33 ? O6' LMT 503 B 1 HETATM 24 C C1 LMT . . . I 9 34.751 -5.432 56.778 1 133.79 ? C1 LMT 503 B 1 HETATM 25 C C2 LMT . . . I 9 34.487 -5.988 55.377 1 129.41 ? C2 LMT 503 B 1 HETATM 26 C C3 LMT . . . I 9 33.264 -5.57 54.609 1 126.33 ? C3 LMT 503 B 1 HETATM 27 C C4 LMT . . . I 9 32.038 -5.906 55.466 1 131.53 ? C4 LMT 503 B 1 HETATM 28 C C5 LMT . . . I 9 30.79 -5.944 54.636 1 121.16 ? C5 LMT 503 B 1 HETATM 29 C C6 LMT . . . I 9 29.582 -6.578 55.308 1 122.08 ? C6 LMT 503 B 1 HETATM 30 C C7 LMT . . . I 9 28.413 -6.359 54.389 1 119.69 ? C7 LMT 503 B 1 HETATM 31 C C8 LMT . . . I 9 27.305 -5.55 55.014 1 118.68 ? C8 LMT 503 B 1 HETATM 32 C C9 LMT . . . I 9 26.051 -5.785 54.221 1 117.78 ? C9 LMT 503 B 1 HETATM 33 C C10 LMT . . . I 9 26.34 -5.251 52.814 1 116.27 ? C10 LMT 503 B 1 HETATM 34 C C11 LMT . . . I 9 25.156 -4.669 52.102 1 114.71 ? C11 LMT 503 B 1 HETATM 35 C C12 LMT . . . I 9 24.123 -5.745 51.913 1 112.99 ? C12 LMT 503 B 1 HETATM 36 H H1B LMT . . . I 9 39.18 0.447 60.856 1 176.15 ? H1B LMT 503 B 1 HETATM 37 H H2B LMT . . . I 9 37.909 1.645 59.344 1 175.6 ? H2B LMT 503 B 1 HETATM 38 H H3B LMT . . . I 9 39.927 2.781 58.383 1 169.71 ? H3B LMT 503 B 1 HETATM 39 H H4B LMT . . . I 9 41.518 1.485 60.19 1 171.11 ? H4B LMT 503 B 1 HETATM 40 H H5B LMT . . . I 9 40.723 -0.021 57.964 1 169.55 ? H5B LMT 503 B 1 HETATM 41 H "H6'2" LMT . . . I 9 42.817 -0.607 59.794 1 167.59 ? "H6'2" LMT 503 B 1 HETATM 42 H "H6'1" LMT . . . I 9 43.056 -0.222 58.359 1 167.59 ? "H6'1" LMT 503 B 1 HETATM 43 H H2O1 LMT . . . I 9 38.16 1.342 57.337 1 190.65 ? H2O1 LMT 503 B 1 HETATM 44 H H3O1 LMT . . . I 9 40.409 3.604 60.293 1 173.11 ? H3O1 LMT 503 B 1 HETATM 45 H H4O1 LMT . . . I 9 42.292 2.794 58.551 1 165.55 ? H4O1 LMT 503 B 1 HETATM 46 H H6B LMT . . . I 9 43.05 -2.384 58.641 1 167.61 ? H6B LMT 503 B 1 HETATM 47 H H1' LMT . . . I 9 36.099 -4.282 58.219 1 165.1 ? H1' LMT 503 B 1 HETATM 48 H H2' LMT . . . I 9 37.059 -2.493 56.394 1 167.03 ? H2' LMT 503 B 1 HETATM 49 H H3' LMT . . . I 9 38.048 -3.104 59.038 1 170.9 ? H3' LMT 503 B 1 HETATM 50 H H4' LMT . . . I 9 37.192 -0.585 58.164 1 177.81 ? H4' LMT 503 B 1 HETATM 51 H H5' LMT . . . I 9 36.131 -2.546 59.868 1 168.32 ? H5' LMT 503 B 1 HETATM 52 H H6D LMT . . . I 9 34.925 -0.047 59.411 1 165.61 ? H6D LMT 503 B 1 HETATM 53 H H6E LMT . . . I 9 35.323 -0.6 60.762 1 165.61 ? H6E LMT 503 B 1 HETATM 54 H H2O2 LMT . . . I 9 38.746 -4.136 57.163 1 165.18 ? H2O2 LMT 503 B 1 HETATM 55 H H3O2 LMT . . . I 9 39.81 -2.622 58.36 1 170.87 ? H3O2 LMT 503 B 1 HETATM 56 H H6' LMT . . . I 9 33.704 -2.086 59.374 1 161.99 ? H6' LMT 503 B 1 HETATM 57 H H12 LMT . . . I 9 34.03 -5.646 57.39 1 161.34 ? H12 LMT 503 B 1 HETATM 58 H H11 LMT . . . I 9 35.531 -5.841 57.185 1 161.34 ? H11 LMT 503 B 1 HETATM 59 H H22 LMT . . . I 9 34.472 -6.955 55.448 1 156.09 ? H22 LMT 503 B 1 HETATM 60 H H21 LMT . . . I 9 35.261 -5.775 54.832 1 156.09 ? H21 LMT 503 B 1 HETATM 61 H H32 LMT . . . I 9 33.204 -6.022 53.753 1 152.39 ? H32 LMT 503 B 1 HETATM 62 H H31 LMT . . . I 9 33.274 -4.622 54.402 1 152.39 ? H31 LMT 503 B 1 HETATM 63 H H42 LMT . . . I 9 31.944 -5.258 56.181 1 158.63 ? H42 LMT 503 B 1 HETATM 64 H H41 LMT . . . I 9 32.168 -6.757 55.913 1 158.63 ? H41 LMT 503 B 1 HETATM 65 H H52 LMT . . . I 9 30.985 -6.419 53.813 1 146.18 ? H52 LMT 503 B 1 HETATM 66 H H51 LMT . . . I 9 30.571 -5.037 54.371 1 146.18 ? H51 LMT 503 B 1 HETATM 67 H H62 LMT . . . I 9 29.417 -6.192 56.183 1 147.28 ? H62 LMT 503 B 1 HETATM 68 H H61 LMT . . . I 9 29.722 -7.522 55.478 1 147.28 ? H61 LMT 503 B 1 HETATM 69 H H72 LMT . . . I 9 28.073 -7.22 54.1 1 144.42 ? H72 LMT 503 B 1 HETATM 70 H H71 LMT . . . I 9 28.724 -5.924 53.58 1 144.42 ? H71 LMT 503 B 1 HETATM 71 H H82 LMT . . . I 9 27.528 -4.607 55.033 1 143.21 ? H82 LMT 503 B 1 HETATM 72 H H81 LMT . . . I 9 27.174 -5.796 55.944 1 143.21 ? H81 LMT 503 B 1 HETATM 73 H H92 LMT . . . I 9 25.289 -5.339 54.622 1 142.13 ? H92 LMT 503 B 1 HETATM 74 H H91 LMT . . . I 9 25.813 -6.725 54.204 1 142.13 ? H91 LMT 503 B 1 HETATM 75 H H102 LMT . . . I 9 26.719 -5.967 52.281 1 140.32 ? H102 LMT 503 B 1 HETATM 76 H H101 LMT . . . I 9 27.043 -4.585 52.872 1 140.32 ? H101 LMT 503 B 1 HETATM 77 H H112 LMT . . . I 9 25.427 -4.302 51.246 1 138.45 ? H112 LMT 503 B 1 HETATM 78 H H111 LMT . . . I 9 24.789 -3.93 52.613 1 138.45 ? H111 LMT 503 B 1 HETATM 79 H H123 LMT . . . I 9 23.408 -5.453 51.326 1 136.37 ? H123 LMT 503 B 1 HETATM 80 H H122 LMT . . . I 9 23.717 -6.001 52.756 1 136.37 ? H122 LMT 503 B 1 HETATM 81 H H121 LMT . . . I 9 24.51 -6.545 51.524 1 136.37 ? H121 LMT 503 B 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 81 #