data_8AD7 # _model_server_result.job_id PrEwjcoeXrEcKsaBIoifow _model_server_result.datetime_utc '2024-11-28 16:00:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ad7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":608}' # _entry.id 8AD7 # _exptl.entry_id 8AD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AD7 _cell.length_a 138.91 _cell.length_b 138.91 _cell.length_c 142.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id DTR _chem_comp.mon_nstd_flag . _chem_comp.name D-TRYPTOPHAN _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DTR sing 83 n n N H DTR sing 84 n n N H2 DTR sing 85 n n CA CB DTR sing 86 n n CA C DTR sing 87 n n CA HA DTR sing 88 n n CB CG DTR sing 89 n n CB HB2 DTR sing 90 n n CB HB3 DTR sing 91 n n CG CD1 DTR doub 92 n y CG CD2 DTR sing 93 n y CD1 NE1 DTR sing 94 n y CD1 HD1 DTR sing 95 n n NE1 CE2 DTR sing 96 n y NE1 HE1 DTR sing 97 n n CE2 CZ2 DTR doub 98 n y CE2 CD2 DTR sing 99 n y CZ2 CH2 DTR sing 100 n y CZ2 HZ2 DTR sing 101 n n CH2 CZ3 DTR doub 102 n y CH2 HH2 DTR sing 103 n n CZ3 CE3 DTR sing 104 n y CZ3 HZ3 DTR sing 105 n n CE3 CD2 DTR doub 106 n y CE3 HE3 DTR sing 107 n n C O DTR doub 108 n n C OXT DTR sing 109 n n OXT HXT DTR sing 110 n n # _atom_sites.entry_id 8AD7 _atom_sites.fract_transf_matrix[1][1] 0.007199 _atom_sites.fract_transf_matrix[1][2] 0.004156 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 601 601 PO4 PO4 . D 2 PO4 A 1 602 602 PO4 PO4 . E 2 PO4 A 1 603 603 PO4 PO4 . F 3 GOL A 1 604 604 GOL GOL . G 3 GOL A 1 605 605 GOL GOL . H 3 GOL A 1 606 606 GOL GOL . I 3 GOL A 1 607 607 GOL GOL . J 4 DTR A 1 608 608 DTR DTR . K 3 GOL B 1 601 601 GOL GOL . L 3 GOL B 1 602 602 GOL GOL . M 5 HOH A 1 701 701 HOH HOH . M 5 HOH A 2 702 702 HOH HOH . M 5 HOH A 3 703 703 HOH HOH . M 5 HOH A 4 704 704 HOH HOH . M 5 HOH A 5 705 705 HOH HOH . M 5 HOH A 6 706 706 HOH HOH . M 5 HOH A 7 707 707 HOH HOH . M 5 HOH A 8 708 708 HOH HOH . M 5 HOH A 9 709 709 HOH HOH . M 5 HOH A 10 710 710 HOH HOH . M 5 HOH A 11 711 711 HOH HOH . M 5 HOH A 12 712 712 HOH HOH . M 5 HOH A 13 713 713 HOH HOH . M 5 HOH A 14 714 714 HOH HOH . M 5 HOH A 15 715 715 HOH HOH . M 5 HOH A 16 716 716 HOH HOH . M 5 HOH A 17 717 717 HOH HOH . M 5 HOH A 18 718 718 HOH HOH . M 5 HOH A 19 719 719 HOH HOH . M 5 HOH A 20 720 720 HOH HOH . M 5 HOH A 21 721 721 HOH HOH . M 5 HOH A 22 722 722 HOH HOH . M 5 HOH A 23 723 723 HOH HOH . M 5 HOH A 24 724 724 HOH HOH . M 5 HOH A 25 725 725 HOH HOH . M 5 HOH A 26 726 726 HOH HOH . M 5 HOH A 27 727 727 HOH HOH . M 5 HOH A 28 728 728 HOH HOH . M 5 HOH A 29 729 729 HOH HOH . M 5 HOH A 30 730 730 HOH HOH . M 5 HOH A 31 731 731 HOH HOH . M 5 HOH A 32 732 732 HOH HOH . M 5 HOH A 33 733 733 HOH HOH . M 5 HOH A 34 734 734 HOH HOH . M 5 HOH A 35 735 735 HOH HOH . M 5 HOH A 36 736 736 HOH HOH . M 5 HOH A 37 737 737 HOH HOH . M 5 HOH A 38 738 738 HOH HOH . M 5 HOH A 39 739 739 HOH HOH . M 5 HOH A 40 740 740 HOH HOH . M 5 HOH A 41 741 741 HOH HOH . M 5 HOH A 42 742 742 HOH HOH . M 5 HOH A 43 743 743 HOH HOH . M 5 HOH A 44 744 744 HOH HOH . M 5 HOH A 45 745 745 HOH HOH . M 5 HOH A 46 746 746 HOH HOH . M 5 HOH A 47 747 747 HOH HOH . M 5 HOH A 48 748 748 HOH HOH . M 5 HOH A 49 749 749 HOH HOH . M 5 HOH A 50 750 750 HOH HOH . M 5 HOH A 51 751 751 HOH HOH . M 5 HOH A 52 752 752 HOH HOH . M 5 HOH A 53 753 753 HOH HOH . M 5 HOH A 54 754 754 HOH HOH . M 5 HOH A 55 755 755 HOH HOH . M 5 HOH A 56 756 756 HOH HOH . M 5 HOH A 57 757 757 HOH HOH . M 5 HOH A 58 758 758 HOH HOH . M 5 HOH A 59 759 759 HOH HOH . M 5 HOH A 60 760 760 HOH HOH . M 5 HOH A 61 761 761 HOH HOH . M 5 HOH A 62 762 762 HOH HOH . M 5 HOH A 63 763 763 HOH HOH . M 5 HOH A 64 764 764 HOH HOH . M 5 HOH A 65 765 765 HOH HOH . M 5 HOH A 66 766 766 HOH HOH . M 5 HOH A 67 767 767 HOH HOH . M 5 HOH A 68 768 768 HOH HOH . M 5 HOH A 69 769 769 HOH HOH . M 5 HOH A 70 770 770 HOH HOH . M 5 HOH A 71 771 771 HOH HOH . M 5 HOH A 72 772 772 HOH HOH . M 5 HOH A 73 773 773 HOH HOH . M 5 HOH A 74 774 774 HOH HOH . M 5 HOH A 75 775 775 HOH HOH . M 5 HOH A 76 776 776 HOH HOH . M 5 HOH A 77 777 777 HOH HOH . M 5 HOH A 78 778 778 HOH HOH . M 5 HOH A 79 779 779 HOH HOH . M 5 HOH A 80 780 780 HOH HOH . M 5 HOH A 81 781 781 HOH HOH . M 5 HOH A 82 782 782 HOH HOH . M 5 HOH A 83 783 783 HOH HOH . M 5 HOH A 84 784 784 HOH HOH . M 5 HOH A 85 785 785 HOH HOH . M 5 HOH A 86 786 786 HOH HOH . M 5 HOH A 87 787 787 HOH HOH . M 5 HOH A 88 788 788 HOH HOH . M 5 HOH A 89 789 789 HOH HOH . M 5 HOH A 90 790 790 HOH HOH . M 5 HOH A 91 791 791 HOH HOH . M 5 HOH A 92 792 792 HOH HOH . M 5 HOH A 93 793 793 HOH HOH . M 5 HOH A 94 794 794 HOH HOH . M 5 HOH A 95 795 795 HOH HOH . M 5 HOH A 96 796 796 HOH HOH . M 5 HOH A 97 797 797 HOH HOH . M 5 HOH A 98 798 798 HOH HOH . M 5 HOH A 99 799 799 HOH HOH . M 5 HOH A 100 800 800 HOH HOH . M 5 HOH A 101 801 801 HOH HOH . M 5 HOH A 102 802 802 HOH HOH . M 5 HOH A 103 803 803 HOH HOH . M 5 HOH A 104 804 804 HOH HOH . M 5 HOH A 105 805 805 HOH HOH . M 5 HOH A 106 806 806 HOH HOH . M 5 HOH A 107 807 807 HOH HOH . M 5 HOH A 108 808 808 HOH HOH . M 5 HOH A 109 809 809 HOH HOH . M 5 HOH A 110 810 810 HOH HOH . M 5 HOH A 111 811 811 HOH HOH . M 5 HOH A 112 812 812 HOH HOH . M 5 HOH A 113 813 813 HOH HOH . M 5 HOH A 114 814 814 HOH HOH . M 5 HOH A 115 815 815 HOH HOH . M 5 HOH A 116 816 816 HOH HOH . M 5 HOH A 117 817 817 HOH HOH . M 5 HOH A 118 818 818 HOH HOH . M 5 HOH A 119 819 819 HOH HOH . M 5 HOH A 120 820 820 HOH HOH . M 5 HOH A 121 821 821 HOH HOH . M 5 HOH A 122 822 822 HOH HOH . M 5 HOH A 123 823 823 HOH HOH . M 5 HOH A 124 824 824 HOH HOH . M 5 HOH A 125 825 825 HOH HOH . M 5 HOH A 126 826 826 HOH HOH . M 5 HOH A 127 827 827 HOH HOH . M 5 HOH A 128 828 828 HOH HOH . M 5 HOH A 129 829 829 HOH HOH . M 5 HOH A 130 830 830 HOH HOH . M 5 HOH A 131 831 831 HOH HOH . M 5 HOH A 132 832 832 HOH HOH . M 5 HOH A 133 833 833 HOH HOH . M 5 HOH A 134 834 834 HOH HOH . M 5 HOH A 135 835 835 HOH HOH . M 5 HOH A 136 836 836 HOH HOH . M 5 HOH A 137 837 837 HOH HOH . M 5 HOH A 138 838 838 HOH HOH . M 5 HOH A 139 839 839 HOH HOH . M 5 HOH A 140 840 840 HOH HOH . M 5 HOH A 141 841 841 HOH HOH . M 5 HOH A 142 842 842 HOH HOH . M 5 HOH A 143 843 843 HOH HOH . M 5 HOH A 144 844 844 HOH HOH . M 5 HOH A 145 845 845 HOH HOH . M 5 HOH A 146 846 846 HOH HOH . M 5 HOH A 147 847 847 HOH HOH . M 5 HOH A 148 848 848 HOH HOH . M 5 HOH A 149 849 849 HOH HOH . M 5 HOH A 150 850 850 HOH HOH . M 5 HOH A 151 851 851 HOH HOH . M 5 HOH A 152 852 852 HOH HOH . M 5 HOH A 153 853 853 HOH HOH . M 5 HOH A 154 854 854 HOH HOH . N 5 HOH B 1 701 701 HOH HOH . N 5 HOH B 2 702 702 HOH HOH . N 5 HOH B 3 703 703 HOH HOH . N 5 HOH B 4 704 704 HOH HOH . N 5 HOH B 5 705 705 HOH HOH . N 5 HOH B 6 706 706 HOH HOH . N 5 HOH B 7 707 707 HOH HOH . N 5 HOH B 8 708 708 HOH HOH . N 5 HOH B 9 709 709 HOH HOH . N 5 HOH B 10 710 710 HOH HOH . N 5 HOH B 11 711 711 HOH HOH . N 5 HOH B 12 712 712 HOH HOH . N 5 HOH B 13 713 713 HOH HOH . N 5 HOH B 14 714 714 HOH HOH . N 5 HOH B 15 715 715 HOH HOH . N 5 HOH B 16 716 716 HOH HOH . N 5 HOH B 17 717 717 HOH HOH . N 5 HOH B 18 718 718 HOH HOH . N 5 HOH B 19 719 719 HOH HOH . N 5 HOH B 20 720 720 HOH HOH . N 5 HOH B 21 721 721 HOH HOH . N 5 HOH B 22 722 722 HOH HOH . N 5 HOH B 23 723 723 HOH HOH . N 5 HOH B 24 724 724 HOH HOH . N 5 HOH B 25 725 725 HOH HOH . N 5 HOH B 26 726 726 HOH HOH . N 5 HOH B 27 727 727 HOH HOH . N 5 HOH B 28 728 728 HOH HOH . N 5 HOH B 29 729 729 HOH HOH . N 5 HOH B 30 730 730 HOH HOH . N 5 HOH B 31 731 731 HOH HOH . N 5 HOH B 32 732 732 HOH HOH . N 5 HOH B 33 733 733 HOH HOH . N 5 HOH B 34 734 734 HOH HOH . N 5 HOH B 35 735 735 HOH HOH . N 5 HOH B 36 736 736 HOH HOH . N 5 HOH B 37 737 737 HOH HOH . N 5 HOH B 38 738 738 HOH HOH . N 5 HOH B 39 739 739 HOH HOH . N 5 HOH B 40 740 740 HOH HOH . N 5 HOH B 41 741 741 HOH HOH . N 5 HOH B 42 742 742 HOH HOH . N 5 HOH B 43 743 743 HOH HOH . N 5 HOH B 44 744 744 HOH HOH . N 5 HOH B 45 745 745 HOH HOH . N 5 HOH B 46 746 746 HOH HOH . N 5 HOH B 47 747 747 HOH HOH . N 5 HOH B 48 748 748 HOH HOH . N 5 HOH B 49 749 749 HOH HOH . N 5 HOH B 50 750 750 HOH HOH . N 5 HOH B 51 751 751 HOH HOH . N 5 HOH B 52 752 752 HOH HOH . N 5 HOH B 53 753 753 HOH HOH . N 5 HOH B 54 754 754 HOH HOH . N 5 HOH B 55 755 755 HOH HOH . N 5 HOH B 56 756 756 HOH HOH . N 5 HOH B 57 757 757 HOH HOH . N 5 HOH B 58 758 758 HOH HOH . N 5 HOH B 59 759 759 HOH HOH . N 5 HOH B 60 760 760 HOH HOH . N 5 HOH B 61 761 761 HOH HOH . N 5 HOH B 62 762 762 HOH HOH . N 5 HOH B 63 763 763 HOH HOH . N 5 HOH B 64 764 764 HOH HOH . N 5 HOH B 65 765 765 HOH HOH . N 5 HOH B 66 766 766 HOH HOH . N 5 HOH B 67 767 767 HOH HOH . N 5 HOH B 68 768 768 HOH HOH . N 5 HOH B 69 769 769 HOH HOH . N 5 HOH B 70 770 770 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DTR . . . J 4 0.168 -53.461 -18.841 0.85 58.35 ? N DTR 608 A 1 HETATM 2 C CA DTR . . . J 4 -0.503 -52.598 -17.831 0.85 71.83 ? CA DTR 608 A 1 HETATM 3 C CB DTR . . . J 4 -0.69 -51.169 -18.348 0.85 72.55 ? CB DTR 608 A 1 HETATM 4 C CG DTR . . . J 4 -1.337 -50.25 -17.353 0.85 67.76 ? CG DTR 608 A 1 HETATM 5 C CD1 DTR . . . J 4 -2.168 -50.609 -16.332 0.85 67.5 ? CD1 DTR 608 A 1 HETATM 6 N NE1 DTR . . . J 4 -2.578 -49.499 -15.64 0.85 65.26 ? NE1 DTR 608 A 1 HETATM 7 C CE2 DTR . . . J 4 -2.039 -48.38 -16.215 0.85 66.58 ? CE2 DTR 608 A 1 HETATM 8 C CZ2 DTR . . . J 4 -2.172 -47.026 -15.874 0.85 69.55 ? CZ2 DTR 608 A 1 HETATM 9 C CH2 DTR . . . J 4 -1.501 -46.098 -16.649 0.85 65.97 ? CH2 DTR 608 A 1 HETATM 10 C CZ3 DTR . . . J 4 -0.714 -46.495 -17.736 0.85 59.11 ? CZ3 DTR 608 A 1 HETATM 11 C CE3 DTR . . . J 4 -0.582 -47.833 -18.075 0.85 68.06 ? CE3 DTR 608 A 1 HETATM 12 C CD2 DTR . . . J 4 -1.245 -48.81 -17.306 0.85 67.76 ? CD2 DTR 608 A 1 HETATM 13 C C DTR . . . J 4 0.297 -52.618 -16.525 0.85 72.93 ? C DTR 608 A 1 HETATM 14 O O DTR . . . J 4 1.358 -52.005 -16.467 0.85 76.12 ? O DTR 608 A 1 HETATM 15 O OXT DTR . . . J 4 -0.108 -53.245 -15.534 0.85 63.74 ? OXT DTR 608 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #