data_8AD8
#
_model_server_result.job_id            u-7buEdbdGxRWyVeflRyNA 
_model_server_result.datetime_utc      '2024-11-25 00:21:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ad8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    8AD8 
#
_exptl.entry_id    8AD8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              291.302 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-tryptophyl-L-serine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AD8 
_cell.length_a            137.2 
_cell.length_b            137.2 
_cell.length_c            143.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AD8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H17 N3 O4' 
_chem_comp.formula_weight    291.302 
_chem_comp.id                LT0 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              D-tryptophyl-L-serine 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     '(2~{S})-2-[[(2~{R})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]amino]-3-oxidanyl-propanoic acid;D-Trp-Ser dipeptide' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 LT0 sing 207 n n 
C10 C02 LT0 sing 208 n n 
C10 N21 LT0 sing 209 n n 
C13 C12 LT0 doub 210 n y 
C13 N14 LT0 sing 211 n y 
C15 C20 LT0 doub 212 n y 
C15 N14 LT0 sing 213 n y 
C15 C16 LT0 sing 214 n y 
C17 C16 LT0 doub 215 n y 
C17 C18 LT0 sing 216 n y 
C20 C12 LT0 sing 217 n y 
C20 C19 LT0 sing 218 n y 
C12 C11 LT0 sing 219 n n 
C19 C18 LT0 doub 220 n y 
O01 C02 LT0 doub 221 n n 
C02 N03 LT0 sing 222 n n 
N03 C04 LT0 sing 223 n n 
C04 C07 LT0 sing 224 n n 
C05 O06 LT0 sing 225 n n 
C07 O08 LT0 doub 226 n n 
C07 O09 LT0 sing 227 n n 
C04 C05 LT0 sing 228 n n 
C10 H1 LT0 sing 229 n n 
C13 H2 LT0 sing 230 n n 
C17 H3 LT0 sing 231 n n 
C19 H4 LT0 sing 232 n n 
C11 H5 LT0 sing 233 n n 
C11 H6 LT0 sing 234 n n 
N14 H7 LT0 sing 235 n n 
N03 H8 LT0 sing 236 n n 
C04 H9 LT0 sing 237 n n 
C05 H10 LT0 sing 238 n n 
C05 H11 LT0 sing 239 n n 
O06 H12 LT0 sing 240 n n 
O09 H13 LT0 sing 241 n n 
C16 H14 LT0 sing 242 n n 
C18 H15 LT0 sing 243 n n 
N21 H16 LT0 sing 244 n n 
N21 H17 LT0 sing 245 n n 
#
_atom_sites.entry_id                     8AD8 
_atom_sites.fract_transf_matrix[1][1]    0.007289 
_atom_sites.fract_transf_matrix[1][2]    0.004208 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 701 701 GOL GOL . 
D 3 LT0 A 1 702 801 LT0 DWS . 
E 4 PO4 A 1 703 1 PO4 PO4 . 
F 2 GOL B 1 601 601 GOL GOL . 
G 5 HOH A 1 801 13 HOH HOH . 
G 5 HOH A 2 802 14 HOH HOH . 
G 5 HOH A 3 803 19 HOH HOH . 
G 5 HOH A 4 804 17 HOH HOH . 
G 5 HOH A 5 805 32 HOH HOH . 
H 5 HOH B 1 701 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 LT0 . . . D 3 -2.058 -54.489 -17.923 1 104.19 ? C10 LT0 702 A 1 
HETATM 2 C C13 LT0 . . . D 3 1.019 -52.981 -19.261 1 94.76 ? C13 LT0 702 A 1 
HETATM 3 C C15 LT0 . . . D 3 0.083 -50.875 -19.328 1 87.36 ? C15 LT0 702 A 1 
HETATM 4 C C17 LT0 . . . D 3 -1.326 -48.915 -18.89 1 72.85 ? C17 LT0 702 A 1 
HETATM 5 C C20 LT0 . . . D 3 -0.634 -51.652 -18.399 1 85.17 ? C20 LT0 702 A 1 
HETATM 6 C C12 LT0 . . . D 3 -0.013 -52.98 -18.359 1 91.78 ? C12 LT0 702 A 1 
HETATM 7 C C19 LT0 . . . D 3 -1.728 -50.996 -17.739 1 79.3 ? C19 LT0 702 A 1 
HETATM 8 C C11 LT0 . . . D 3 -0.507 -54.123 -17.57 1 98.08 ? C11 LT0 702 A 1 
HETATM 9 N N14 LT0 . . . D 3 1.126 -51.712 -19.861 1 96.75 ? N14 LT0 702 A 1 
HETATM 10 O O01 LT0 . . . D 3 -1.878 -56.831 -18.175 1 90.84 ? O01 LT0 702 A 1 
HETATM 11 C C02 LT0 . . . D 3 -2.53 -55.981 -17.603 1 95.53 ? C02 LT0 702 A 1 
HETATM 12 N N03 LT0 . . . D 3 -3.654 -56.373 -16.751 1 92.46 ? N03 LT0 702 A 1 
HETATM 13 C C04 LT0 . . . D 3 -4.681 -55.51 -15.91 1 84.47 ? C04 LT0 702 A 1 
HETATM 14 C C05 LT0 . . . D 3 -5.158 -53.993 -16.504 1 87.3 ? C05 LT0 702 A 1 
HETATM 15 O O06 LT0 . . . D 3 -5.017 -52.866 -15.554 1 74.08 ? O06 LT0 702 A 1 
HETATM 16 C C07 LT0 . . . D 3 -5.956 -56.519 -15.732 1 79.72 ? C07 LT0 702 A 1 
HETATM 17 O O08 LT0 . . . D 3 -6.854 -56.488 -16.6 1 69.55 ? O08 LT0 702 A 1 
HETATM 18 O O09 LT0 . . . D 3 -5.91 -57.297 -14.772 1 81 ? O09 LT0 702 A 1 
HETATM 19 C C16 LT0 . . . D 3 -0.255 -49.497 -19.574 1 80.95 ? C16 LT0 702 A 1 
HETATM 20 C C18 LT0 . . . D 3 -2.077 -49.681 -17.972 1 69.12 ? C18 LT0 702 A 1 
HETATM 21 N N21 LT0 . . . D 3 -2.396 -54.174 -19.404 1 106.76 ? N21 LT0 702 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#