data_8ADB # _model_server_result.job_id kdNnbqaEkDh3sS-67FcBDw _model_server_result.datetime_utc '2024-11-26 11:11:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8adb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8ADB # _exptl.entry_id 8ADB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ADB _cell.length_a 101.766 _cell.length_b 101.766 _cell.length_c 63.204 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ADB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 35 A CYS 313 1_555 D C2 AYE . A AYE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? covale ? covale2 D N1 AYE . A AYE 502 1_555 B C GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 80 n n C1 O2 CIT sing 81 n n C1 C2 CIT sing 82 n n O2 HO2 CIT sing 83 n n C2 C3 CIT sing 84 n n C2 H21 CIT sing 85 n n C2 H22 CIT sing 86 n n C3 O7 CIT sing 87 n n C3 C4 CIT sing 88 n n C3 C6 CIT sing 89 n n O7 HO7 CIT sing 90 n n C4 C5 CIT sing 91 n n C4 H41 CIT sing 92 n n C4 H42 CIT sing 93 n n C5 O3 CIT doub 94 n n C5 O4 CIT sing 95 n n O4 HO4 CIT sing 96 n n C6 O5 CIT doub 97 n n C6 O6 CIT sing 98 n n O6 HO6 CIT sing 99 n n # _atom_sites.entry_id 8ADB _atom_sites.fract_transf_matrix[1][1] 0.009826 _atom_sites.fract_transf_matrix[1][2] 0.005673 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CIT A 1 501 501 CIT CIT . D 4 AYE A 1 502 76 AYE AYE . E 5 HOH A 1 601 112 HOH HOH . E 5 HOH A 2 602 129 HOH HOH . E 5 HOH A 3 603 70 HOH HOH . E 5 HOH A 4 604 34 HOH HOH . E 5 HOH A 5 605 12 HOH HOH . E 5 HOH A 6 606 13 HOH HOH . E 5 HOH A 7 607 33 HOH HOH . E 5 HOH A 8 608 37 HOH HOH . E 5 HOH A 9 609 66 HOH HOH . E 5 HOH A 10 610 27 HOH HOH . E 5 HOH A 11 611 45 HOH HOH . E 5 HOH A 12 612 90 HOH HOH . E 5 HOH A 13 613 7 HOH HOH . E 5 HOH A 14 614 110 HOH HOH . E 5 HOH A 15 615 61 HOH HOH . E 5 HOH A 16 616 134 HOH HOH . E 5 HOH A 17 617 108 HOH HOH . E 5 HOH A 18 618 2 HOH HOH . E 5 HOH A 19 619 20 HOH HOH . E 5 HOH A 20 620 69 HOH HOH . E 5 HOH A 21 621 59 HOH HOH . E 5 HOH A 22 622 9 HOH HOH . E 5 HOH A 23 623 86 HOH HOH . E 5 HOH A 24 624 15 HOH HOH . E 5 HOH A 25 625 30 HOH HOH . E 5 HOH A 26 626 35 HOH HOH . E 5 HOH A 27 627 68 HOH HOH . E 5 HOH A 28 628 41 HOH HOH . E 5 HOH A 29 629 120 HOH HOH . E 5 HOH A 30 630 123 HOH HOH . E 5 HOH A 31 631 82 HOH HOH . E 5 HOH A 32 632 54 HOH HOH . E 5 HOH A 33 633 19 HOH HOH . E 5 HOH A 34 634 4 HOH HOH . E 5 HOH A 35 635 28 HOH HOH . E 5 HOH A 36 636 5 HOH HOH . E 5 HOH A 37 637 10 HOH HOH . E 5 HOH A 38 638 67 HOH HOH . E 5 HOH A 39 639 21 HOH HOH . E 5 HOH A 40 640 104 HOH HOH . E 5 HOH A 41 641 47 HOH HOH . E 5 HOH A 42 642 31 HOH HOH . E 5 HOH A 43 643 23 HOH HOH . E 5 HOH A 44 644 137 HOH HOH . E 5 HOH A 45 645 24 HOH HOH . E 5 HOH A 46 646 6 HOH HOH . E 5 HOH A 47 647 25 HOH HOH . E 5 HOH A 48 648 98 HOH HOH . E 5 HOH A 49 649 55 HOH HOH . E 5 HOH A 50 650 53 HOH HOH . E 5 HOH A 51 651 36 HOH HOH . E 5 HOH A 52 652 62 HOH HOH . E 5 HOH A 53 653 48 HOH HOH . E 5 HOH A 54 654 42 HOH HOH . E 5 HOH A 55 655 132 HOH HOH . E 5 HOH A 56 656 44 HOH HOH . E 5 HOH A 57 657 91 HOH HOH . E 5 HOH A 58 658 81 HOH HOH . E 5 HOH A 59 659 107 HOH HOH . E 5 HOH A 60 660 50 HOH HOH . E 5 HOH A 61 661 3 HOH HOH . E 5 HOH A 62 662 127 HOH HOH . E 5 HOH A 63 663 78 HOH HOH . E 5 HOH A 64 664 51 HOH HOH . E 5 HOH A 65 665 46 HOH HOH . E 5 HOH A 66 666 58 HOH HOH . E 5 HOH A 67 667 72 HOH HOH . E 5 HOH A 68 668 136 HOH HOH . E 5 HOH A 69 669 133 HOH HOH . E 5 HOH A 70 670 1 HOH HOH . E 5 HOH A 71 671 119 HOH HOH . E 5 HOH A 72 672 57 HOH HOH . E 5 HOH A 73 673 84 HOH HOH . E 5 HOH A 74 674 49 HOH HOH . E 5 HOH A 75 675 101 HOH HOH . E 5 HOH A 76 676 114 HOH HOH . E 5 HOH A 77 677 11 HOH HOH . E 5 HOH A 78 678 63 HOH HOH . E 5 HOH A 79 679 103 HOH HOH . E 5 HOH A 80 680 38 HOH HOH . E 5 HOH A 81 681 93 HOH HOH . E 5 HOH A 82 682 83 HOH HOH . E 5 HOH A 83 683 52 HOH HOH . E 5 HOH A 84 684 115 HOH HOH . E 5 HOH A 85 685 43 HOH HOH . E 5 HOH A 86 686 128 HOH HOH . E 5 HOH A 87 687 8 HOH HOH . E 5 HOH A 88 688 96 HOH HOH . E 5 HOH A 89 689 97 HOH HOH . E 5 HOH A 90 690 32 HOH HOH . E 5 HOH A 91 691 126 HOH HOH . E 5 HOH A 92 692 99 HOH HOH . E 5 HOH A 93 693 121 HOH HOH . E 5 HOH A 94 694 109 HOH HOH . E 5 HOH A 95 695 113 HOH HOH . E 5 HOH A 96 696 135 HOH HOH . E 5 HOH A 97 697 125 HOH HOH . E 5 HOH A 98 698 92 HOH HOH . E 5 HOH A 99 699 117 HOH HOH . E 5 HOH A 100 700 76 HOH HOH . E 5 HOH A 101 701 71 HOH HOH . E 5 HOH A 102 702 116 HOH HOH . E 5 HOH A 103 703 65 HOH HOH . E 5 HOH A 104 704 130 HOH HOH . E 5 HOH A 105 705 88 HOH HOH . E 5 HOH A 106 706 80 HOH HOH . E 5 HOH A 107 707 139 HOH HOH . E 5 HOH A 108 708 124 HOH HOH . E 5 HOH A 109 709 118 HOH HOH . E 5 HOH A 110 710 74 HOH HOH . E 5 HOH A 111 711 122 HOH HOH . F 5 HOH B 1 101 131 HOH HOH . F 5 HOH B 2 102 75 HOH HOH . F 5 HOH B 3 103 89 HOH HOH . F 5 HOH B 4 104 14 HOH HOH . F 5 HOH B 5 105 56 HOH HOH . F 5 HOH B 6 106 40 HOH HOH . F 5 HOH B 7 107 39 HOH HOH . F 5 HOH B 8 108 18 HOH HOH . F 5 HOH B 9 109 79 HOH HOH . F 5 HOH B 10 110 16 HOH HOH . F 5 HOH B 11 111 26 HOH HOH . F 5 HOH B 12 112 60 HOH HOH . F 5 HOH B 13 113 87 HOH HOH . F 5 HOH B 14 114 29 HOH HOH . F 5 HOH B 15 115 73 HOH HOH . F 5 HOH B 16 116 64 HOH HOH . F 5 HOH B 17 117 102 HOH HOH . F 5 HOH B 18 118 17 HOH HOH . F 5 HOH B 19 119 138 HOH HOH . F 5 HOH B 20 120 77 HOH HOH . F 5 HOH B 21 121 105 HOH HOH . F 5 HOH B 22 122 94 HOH HOH . F 5 HOH B 23 123 22 HOH HOH . F 5 HOH B 24 124 106 HOH HOH . F 5 HOH B 25 125 100 HOH HOH . F 5 HOH B 26 126 95 HOH HOH . F 5 HOH B 27 127 111 HOH HOH . F 5 HOH B 28 128 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 64.183 6.876 8.206 1 52.22 ? C1 CIT 501 A 1 HETATM 2 O O1 CIT . . . C 3 63.129 7.424 7.813 1 31.49 ? O1 CIT 501 A 1 HETATM 3 O O2 CIT . . . C 3 64.835 7.46 9.117 1 47.63 ? O2 CIT 501 A 1 HETATM 4 C C2 CIT . . . C 3 64.611 5.536 7.599 1 66.93 ? C2 CIT 501 A 1 HETATM 5 C C3 CIT . . . C 3 65.244 5.788 6.234 1 84.59 ? C3 CIT 501 A 1 HETATM 6 O O7 CIT . . . C 3 64.457 6.813 5.586 1 79.88 ? O7 CIT 501 A 1 HETATM 7 C C4 CIT . . . C 3 66.694 6.265 6.401 1 86.46 ? C4 CIT 501 A 1 HETATM 8 C C5 CIT . . . C 3 67.471 5.374 7.355 1 108.72 ? C5 CIT 501 A 1 HETATM 9 O O3 CIT . . . C 3 68.01 4.316 6.948 1 100.94 ? O3 CIT 501 A 1 HETATM 10 O O4 CIT . . . C 3 67.557 5.673 8.571 1 100.32 ? O4 CIT 501 A 1 HETATM 11 C C6 CIT . . . C 3 65.183 4.598 5.28 1 80.33 ? C6 CIT 501 A 1 HETATM 12 O O5 CIT . . . C 3 64.78 4.823 4.114 1 63.53 ? O5 CIT 501 A 1 HETATM 13 O O6 CIT . . . C 3 65.483 3.426 5.619 1 76.67 ? O6 CIT 501 A 1 HETATM 14 H H21 CIT . . . C 3 65.326 5.041 8.256 1 80.36 ? H21 CIT 501 A 1 HETATM 15 H H22 CIT . . . C 3 63.745 4.882 7.493 1 80.36 ? H22 CIT 501 A 1 HETATM 16 H HO7 CIT . . . C 3 64.111 6.471 4.736 1 95.9 ? HO7 CIT 501 A 1 HETATM 17 H H41 CIT . . . C 3 66.696 7.287 6.781 1 103.79 ? H41 CIT 501 A 1 HETATM 18 H H42 CIT . . . C 3 67.187 6.268 5.429 1 103.79 ? H42 CIT 501 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #