data_8ADB
#
_model_server_result.job_id            YqMIiZHIwRLa_XNMtjM06w 
_model_server_result.datetime_utc      '2024-11-22 23:36:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8adb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8ADB 
#
_exptl.entry_id    8ADB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              57.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            prop-2-en-1-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8ADB 
_cell.length_a            101.766 
_cell.length_b            101.766 
_cell.length_c            63.204 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ADB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 35 A CYS 313 1_555 D C2 AYE . A AYE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
covale ? covale2 D N1 AYE . A AYE 502 1_555 B C GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C3 H7 N' 
_chem_comp.formula_weight    57.094 
_chem_comp.id                AYE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              prop-2-en-1-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ALLYLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 AYE doub 70 n n 
C2 C1 AYE sing 71 n n 
C1 N1 AYE sing 72 n n 
C2 H2 AYE sing 73 n n 
C3 H3 AYE sing 74 n n 
C3 H3A AYE sing 75 n n 
C1 H1 AYE sing 76 n n 
C1 H1A AYE sing 77 n n 
N1 HN1 AYE sing 78 n n 
N1 HN1A AYE sing 79 n n 
#
_atom_sites.entry_id                     8ADB 
_atom_sites.fract_transf_matrix[1][1]    0.009826 
_atom_sites.fract_transf_matrix[1][2]    0.005673 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CIT A 1 501 501 CIT CIT . 
D 4 AYE A 1 502 76 AYE AYE . 
E 5 HOH A 1 601 112 HOH HOH . 
E 5 HOH A 2 602 129 HOH HOH . 
E 5 HOH A 3 603 70 HOH HOH . 
E 5 HOH A 4 604 34 HOH HOH . 
E 5 HOH A 5 605 12 HOH HOH . 
E 5 HOH A 6 606 13 HOH HOH . 
E 5 HOH A 7 607 33 HOH HOH . 
E 5 HOH A 8 608 37 HOH HOH . 
E 5 HOH A 9 609 66 HOH HOH . 
E 5 HOH A 10 610 27 HOH HOH . 
E 5 HOH A 11 611 45 HOH HOH . 
E 5 HOH A 12 612 90 HOH HOH . 
E 5 HOH A 13 613 7 HOH HOH . 
E 5 HOH A 14 614 110 HOH HOH . 
E 5 HOH A 15 615 61 HOH HOH . 
E 5 HOH A 16 616 134 HOH HOH . 
E 5 HOH A 17 617 108 HOH HOH . 
E 5 HOH A 18 618 2 HOH HOH . 
E 5 HOH A 19 619 20 HOH HOH . 
E 5 HOH A 20 620 69 HOH HOH . 
E 5 HOH A 21 621 59 HOH HOH . 
E 5 HOH A 22 622 9 HOH HOH . 
E 5 HOH A 23 623 86 HOH HOH . 
E 5 HOH A 24 624 15 HOH HOH . 
E 5 HOH A 25 625 30 HOH HOH . 
E 5 HOH A 26 626 35 HOH HOH . 
E 5 HOH A 27 627 68 HOH HOH . 
E 5 HOH A 28 628 41 HOH HOH . 
E 5 HOH A 29 629 120 HOH HOH . 
E 5 HOH A 30 630 123 HOH HOH . 
E 5 HOH A 31 631 82 HOH HOH . 
E 5 HOH A 32 632 54 HOH HOH . 
E 5 HOH A 33 633 19 HOH HOH . 
E 5 HOH A 34 634 4 HOH HOH . 
E 5 HOH A 35 635 28 HOH HOH . 
E 5 HOH A 36 636 5 HOH HOH . 
E 5 HOH A 37 637 10 HOH HOH . 
E 5 HOH A 38 638 67 HOH HOH . 
E 5 HOH A 39 639 21 HOH HOH . 
E 5 HOH A 40 640 104 HOH HOH . 
E 5 HOH A 41 641 47 HOH HOH . 
E 5 HOH A 42 642 31 HOH HOH . 
E 5 HOH A 43 643 23 HOH HOH . 
E 5 HOH A 44 644 137 HOH HOH . 
E 5 HOH A 45 645 24 HOH HOH . 
E 5 HOH A 46 646 6 HOH HOH . 
E 5 HOH A 47 647 25 HOH HOH . 
E 5 HOH A 48 648 98 HOH HOH . 
E 5 HOH A 49 649 55 HOH HOH . 
E 5 HOH A 50 650 53 HOH HOH . 
E 5 HOH A 51 651 36 HOH HOH . 
E 5 HOH A 52 652 62 HOH HOH . 
E 5 HOH A 53 653 48 HOH HOH . 
E 5 HOH A 54 654 42 HOH HOH . 
E 5 HOH A 55 655 132 HOH HOH . 
E 5 HOH A 56 656 44 HOH HOH . 
E 5 HOH A 57 657 91 HOH HOH . 
E 5 HOH A 58 658 81 HOH HOH . 
E 5 HOH A 59 659 107 HOH HOH . 
E 5 HOH A 60 660 50 HOH HOH . 
E 5 HOH A 61 661 3 HOH HOH . 
E 5 HOH A 62 662 127 HOH HOH . 
E 5 HOH A 63 663 78 HOH HOH . 
E 5 HOH A 64 664 51 HOH HOH . 
E 5 HOH A 65 665 46 HOH HOH . 
E 5 HOH A 66 666 58 HOH HOH . 
E 5 HOH A 67 667 72 HOH HOH . 
E 5 HOH A 68 668 136 HOH HOH . 
E 5 HOH A 69 669 133 HOH HOH . 
E 5 HOH A 70 670 1 HOH HOH . 
E 5 HOH A 71 671 119 HOH HOH . 
E 5 HOH A 72 672 57 HOH HOH . 
E 5 HOH A 73 673 84 HOH HOH . 
E 5 HOH A 74 674 49 HOH HOH . 
E 5 HOH A 75 675 101 HOH HOH . 
E 5 HOH A 76 676 114 HOH HOH . 
E 5 HOH A 77 677 11 HOH HOH . 
E 5 HOH A 78 678 63 HOH HOH . 
E 5 HOH A 79 679 103 HOH HOH . 
E 5 HOH A 80 680 38 HOH HOH . 
E 5 HOH A 81 681 93 HOH HOH . 
E 5 HOH A 82 682 83 HOH HOH . 
E 5 HOH A 83 683 52 HOH HOH . 
E 5 HOH A 84 684 115 HOH HOH . 
E 5 HOH A 85 685 43 HOH HOH . 
E 5 HOH A 86 686 128 HOH HOH . 
E 5 HOH A 87 687 8 HOH HOH . 
E 5 HOH A 88 688 96 HOH HOH . 
E 5 HOH A 89 689 97 HOH HOH . 
E 5 HOH A 90 690 32 HOH HOH . 
E 5 HOH A 91 691 126 HOH HOH . 
E 5 HOH A 92 692 99 HOH HOH . 
E 5 HOH A 93 693 121 HOH HOH . 
E 5 HOH A 94 694 109 HOH HOH . 
E 5 HOH A 95 695 113 HOH HOH . 
E 5 HOH A 96 696 135 HOH HOH . 
E 5 HOH A 97 697 125 HOH HOH . 
E 5 HOH A 98 698 92 HOH HOH . 
E 5 HOH A 99 699 117 HOH HOH . 
E 5 HOH A 100 700 76 HOH HOH . 
E 5 HOH A 101 701 71 HOH HOH . 
E 5 HOH A 102 702 116 HOH HOH . 
E 5 HOH A 103 703 65 HOH HOH . 
E 5 HOH A 104 704 130 HOH HOH . 
E 5 HOH A 105 705 88 HOH HOH . 
E 5 HOH A 106 706 80 HOH HOH . 
E 5 HOH A 107 707 139 HOH HOH . 
E 5 HOH A 108 708 124 HOH HOH . 
E 5 HOH A 109 709 118 HOH HOH . 
E 5 HOH A 110 710 74 HOH HOH . 
E 5 HOH A 111 711 122 HOH HOH . 
F 5 HOH B 1 101 131 HOH HOH . 
F 5 HOH B 2 102 75 HOH HOH . 
F 5 HOH B 3 103 89 HOH HOH . 
F 5 HOH B 4 104 14 HOH HOH . 
F 5 HOH B 5 105 56 HOH HOH . 
F 5 HOH B 6 106 40 HOH HOH . 
F 5 HOH B 7 107 39 HOH HOH . 
F 5 HOH B 8 108 18 HOH HOH . 
F 5 HOH B 9 109 79 HOH HOH . 
F 5 HOH B 10 110 16 HOH HOH . 
F 5 HOH B 11 111 26 HOH HOH . 
F 5 HOH B 12 112 60 HOH HOH . 
F 5 HOH B 13 113 87 HOH HOH . 
F 5 HOH B 14 114 29 HOH HOH . 
F 5 HOH B 15 115 73 HOH HOH . 
F 5 HOH B 16 116 64 HOH HOH . 
F 5 HOH B 17 117 102 HOH HOH . 
F 5 HOH B 18 118 17 HOH HOH . 
F 5 HOH B 19 119 138 HOH HOH . 
F 5 HOH B 20 120 77 HOH HOH . 
F 5 HOH B 21 121 105 HOH HOH . 
F 5 HOH B 22 122 94 HOH HOH . 
F 5 HOH B 23 123 22 HOH HOH . 
F 5 HOH B 24 124 106 HOH HOH . 
F 5 HOH B 25 125 100 HOH HOH . 
F 5 HOH B 26 126 95 HOH HOH . 
F 5 HOH B 27 127 111 HOH HOH . 
F 5 HOH B 28 128 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 AYE . . . D 4 56.661 6.153 13.431 1 38.74 ? C2 AYE 502 A 1 
HETATM 2 C C3 AYE . . . D 4 55.566 5.702 12.898 1 43.24 ? C3 AYE 502 A 1 
HETATM 3 C C1 AYE . . . D 4 57.785 5.416 14.093 1 29.59 ? C1 AYE 502 A 1 
HETATM 4 N N1 AYE . . . D 4 58.118 5.952 15.415 1 41.94 ? N1 AYE 502 A 1 
HETATM 5 H H3 AYE . . . D 4 54.941 6.303 12.512 1 51.94 ? H3 AYE 502 A 1 
HETATM 6 H H3A AYE . . . D 4 55.386 4.771 12.893 1 51.94 ? H3A AYE 502 A 1 
HETATM 7 H H1 AYE . . . D 4 58.571 5.464 13.526 1 35.55 ? H1 AYE 502 A 1 
HETATM 8 H H1A AYE . . . D 4 57.539 4.481 14.184 1 35.55 ? H1A AYE 502 A 1 
HETATM 9 H HN1 AYE . . . D 4 57.309 6.075 15.792 1 50.37 ? HN1 AYE 502 A 1 
HETATM 10 H HN1A AYE . . . D 4 58.515 6.751 15.279 1 50.37 ? HN1A AYE 502 A 1 
#
_model_server_stats.io_time_ms              92 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#