data_8AE5 # _model_server_result.job_id BpuEClmJnXSnV2DvodlJ9Q _model_server_result.datetime_utc '2024-10-19 10:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ae5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 8AE5 # _exptl.entry_id 8AE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AE5 _cell.length_a 159.178 _cell.length_b 174.122 _cell.length_c 112.998 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,O,P 1 1 C,D,E,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG B 311 NAG 3 n E NAG 2 E 2 NAG B 314 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 66 A ASN 91 1_555 G C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A C THR 121 A THR 146 1_555 A N SNN 122 A SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A N1 SNN 122 A SNN 147 1_555 A CA HIS 123 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale4 A C ALA 163 A ALA 188 1_555 A N SCH 164 A SCH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SCH 164 A SCH 189 1_555 A N GLU 165 A GLU 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A ND2 ASN 247 A ASN 272 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale7 C ND2 ASN 66 B ASN 91 1_555 K C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 C C THR 121 B THR 146 1_555 C N SNN 122 B SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 C N1 SNN 122 B SNN 147 1_555 C CA HIS 123 B HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale10 C ND2 ASN 142 B ASN 167 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 C C ALA 163 B ALA 188 1_555 C N SCH 164 B SCH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 C C SCH 164 B SCH 189 1_555 C N GLU 165 B GLU 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 C ND2 ASN 247 B ASN 272 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8AE5 _atom_sites.fract_transf_matrix[1][1] 0.006282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 301 311 NAG NAG . G 4 NAG A 1 302 312 NAG NAG . H 5 SO4 A 1 303 4 SO4 SO4 . I 5 SO4 C 1 201 1 SO4 SO4 . J 4 NAG B 1 301 310 NAG NAG . K 4 NAG B 1 302 312 NAG NAG . L 5 SO4 B 1 303 2 SO4 SO4 . M 5 SO4 D 1 201 3 SO4 SO4 . N 5 SO4 D 1 202 5 SO4 SO4 . O 6 HOH A 1 401 54 HOH HOH . O 6 HOH A 2 402 21 HOH HOH . O 6 HOH A 3 403 95 HOH HOH . O 6 HOH A 4 404 73 HOH HOH . O 6 HOH A 5 405 44 HOH HOH . O 6 HOH A 6 406 80 HOH HOH . O 6 HOH A 7 407 121 HOH HOH . O 6 HOH A 8 408 38 HOH HOH . O 6 HOH A 9 409 84 HOH HOH . O 6 HOH A 10 410 67 HOH HOH . O 6 HOH A 11 411 10 HOH HOH . O 6 HOH A 12 412 9 HOH HOH . O 6 HOH A 13 413 101 HOH HOH . O 6 HOH A 14 414 48 HOH HOH . O 6 HOH A 15 415 40 HOH HOH . O 6 HOH A 16 416 81 HOH HOH . O 6 HOH A 17 417 5 HOH HOH . P 6 HOH C 1 301 23 HOH HOH . P 6 HOH C 2 302 69 HOH HOH . P 6 HOH C 3 303 55 HOH HOH . P 6 HOH C 4 304 118 HOH HOH . P 6 HOH C 5 305 120 HOH HOH . P 6 HOH C 6 306 89 HOH HOH . P 6 HOH C 7 307 83 HOH HOH . P 6 HOH C 8 308 41 HOH HOH . P 6 HOH C 9 309 76 HOH HOH . P 6 HOH C 10 310 46 HOH HOH . P 6 HOH C 11 311 74 HOH HOH . P 6 HOH C 12 312 61 HOH HOH . P 6 HOH C 13 313 96 HOH HOH . P 6 HOH C 14 314 42 HOH HOH . P 6 HOH C 15 315 36 HOH HOH . P 6 HOH C 16 316 91 HOH HOH . P 6 HOH C 17 317 15 HOH HOH . P 6 HOH C 18 318 18 HOH HOH . P 6 HOH C 19 319 49 HOH HOH . P 6 HOH C 20 320 56 HOH HOH . P 6 HOH C 21 321 79 HOH HOH . P 6 HOH C 22 322 59 HOH HOH . P 6 HOH C 23 323 8 HOH HOH . P 6 HOH C 24 324 7 HOH HOH . P 6 HOH C 25 325 28 HOH HOH . P 6 HOH C 26 326 107 HOH HOH . P 6 HOH C 27 327 30 HOH HOH . P 6 HOH C 28 328 63 HOH HOH . P 6 HOH C 29 329 70 HOH HOH . P 6 HOH C 30 330 31 HOH HOH . P 6 HOH C 31 331 20 HOH HOH . P 6 HOH C 32 332 90 HOH HOH . Q 6 HOH B 1 401 58 HOH HOH . Q 6 HOH B 2 402 11 HOH HOH . Q 6 HOH B 3 403 93 HOH HOH . Q 6 HOH B 4 404 124 HOH HOH . Q 6 HOH B 5 405 2 HOH HOH . Q 6 HOH B 6 406 27 HOH HOH . Q 6 HOH B 7 407 19 HOH HOH . Q 6 HOH B 8 408 66 HOH HOH . Q 6 HOH B 9 409 71 HOH HOH . Q 6 HOH B 10 410 13 HOH HOH . Q 6 HOH B 11 411 25 HOH HOH . R 6 HOH D 1 301 78 HOH HOH . R 6 HOH D 2 302 133 HOH HOH . R 6 HOH D 3 303 39 HOH HOH . R 6 HOH D 4 304 77 HOH HOH . R 6 HOH D 5 305 16 HOH HOH . R 6 HOH D 6 306 126 HOH HOH . R 6 HOH D 7 307 117 HOH HOH . R 6 HOH D 8 308 14 HOH HOH . R 6 HOH D 9 309 45 HOH HOH . R 6 HOH D 10 310 6 HOH HOH . R 6 HOH D 11 311 75 HOH HOH . R 6 HOH D 12 312 97 HOH HOH . R 6 HOH D 13 313 51 HOH HOH . R 6 HOH D 14 314 26 HOH HOH . R 6 HOH D 15 315 35 HOH HOH . R 6 HOH D 16 316 102 HOH HOH . R 6 HOH D 17 317 53 HOH HOH . R 6 HOH D 18 318 29 HOH HOH . R 6 HOH D 19 319 32 HOH HOH . R 6 HOH D 20 320 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 4 39.754 -52.229 -2.736 1 168.53 ? C1 NAG 302 B 1 HETATM 2 C C2 NAG . . . K 4 39.639 -53.753 -2.485 1 170.67 ? C2 NAG 302 B 1 HETATM 3 C C3 NAG . . . K 4 39.553 -54.509 -3.822 1 177.1 ? C3 NAG 302 B 1 HETATM 4 C C4 NAG . . . K 4 38.528 -53.882 -4.767 1 184.8 ? C4 NAG 302 B 1 HETATM 5 C C5 NAG . . . K 4 38.727 -52.374 -4.874 1 171.5 ? C5 NAG 302 B 1 HETATM 6 C C6 NAG . . . K 4 37.661 -51.69 -5.697 1 163.91 ? C6 NAG 302 B 1 HETATM 7 C C7 NAG . . . K 4 40.753 -55.382 -0.996 1 154.33 ? C7 NAG 302 B 1 HETATM 8 C C8 NAG . . . K 4 42.027 -55.727 -0.279 1 146.94 ? C8 NAG 302 B 1 HETATM 9 N N2 NAG . . . K 4 40.767 -54.241 -1.699 1 162.6 ? N2 NAG 302 B 1 HETATM 10 O O3 NAG . . . K 4 39.221 -55.874 -3.583 1 176.7 ? O3 NAG 302 B 1 HETATM 11 O O4 NAG . . . K 4 38.649 -54.431 -6.076 1 179.93 ? O4 NAG 302 B 1 HETATM 12 O O5 NAG . . . K 4 38.676 -51.795 -3.566 1 176.88 ? O5 NAG 302 B 1 HETATM 13 O O6 NAG . . . K 4 37.822 -50.279 -5.671 1 163.47 ? O6 NAG 302 B 1 HETATM 14 O O7 NAG . . . K 4 39.758 -56.098 -0.933 1 151.55 ? O7 NAG 302 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #