data_8AEM # _model_server_result.job_id a8_DrcZDJCu7Dj-K2Ues-Q _model_server_result.datetime_utc '2024-11-28 09:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 8AEM # _exptl.entry_id 8AEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.63 _cell.angle_gamma 90 _cell.entry_id 8AEM _cell.length_a 58.72 _cell.length_b 45.886 _cell.length_c 63.339 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 76 n n PG O2G ATP sing 77 n n PG O3G ATP sing 78 n n PG O3B ATP sing 79 n n O2G HOG2 ATP sing 80 n n O3G HOG3 ATP sing 81 n n PB O1B ATP doub 82 n n PB O2B ATP sing 83 n n PB O3B ATP sing 84 n n PB O3A ATP sing 85 n n O2B HOB2 ATP sing 86 n n PA O1A ATP doub 87 n n PA O2A ATP sing 88 n n PA O3A ATP sing 89 n n PA O5' ATP sing 90 n n O2A HOA2 ATP sing 91 n n O5' C5' ATP sing 92 n n C5' C4' ATP sing 93 n n C5' "H5'1" ATP sing 94 n n C5' "H5'2" ATP sing 95 n n C4' O4' ATP sing 96 n n C4' C3' ATP sing 97 n n C4' H4' ATP sing 98 n n O4' C1' ATP sing 99 n n C3' O3' ATP sing 100 n n C3' C2' ATP sing 101 n n C3' H3' ATP sing 102 n n O3' HO3' ATP sing 103 n n C2' O2' ATP sing 104 n n C2' C1' ATP sing 105 n n C2' H2' ATP sing 106 n n O2' HO2' ATP sing 107 n n C1' N9 ATP sing 108 n n C1' H1' ATP sing 109 n n N9 C8 ATP sing 110 n y N9 C4 ATP sing 111 n y C8 N7 ATP doub 112 n y C8 H8 ATP sing 113 n n N7 C5 ATP sing 114 n y C5 C6 ATP sing 115 n y C5 C4 ATP doub 116 n y C6 N6 ATP sing 117 n n C6 N1 ATP doub 118 n y N6 HN61 ATP sing 119 n n N6 HN62 ATP sing 120 n n N1 C2 ATP sing 121 n y C2 N3 ATP doub 122 n y C2 H2 ATP sing 123 n n N3 C4 ATP sing 124 n y # _atom_sites.entry_id 8AEM _atom_sites.fract_transf_matrix[1][1] 0.01703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 2 ACT A 1 403 3 ACT ACT . E 2 ACT A 1 404 4 ACT ACT . F 2 ACT A 1 405 5 ACT ACT . G 2 ACT A 1 406 6 ACT ACT . H 3 LVF A 1 407 1 LVF H11 . I 4 ATP A 1 408 1 ATP ATP . J 5 HOH A 1 501 152 HOH HOH . J 5 HOH A 2 502 45 HOH HOH . J 5 HOH A 3 503 220 HOH HOH . J 5 HOH A 4 504 168 HOH HOH . J 5 HOH A 5 505 159 HOH HOH . J 5 HOH A 6 506 12 HOH HOH . J 5 HOH A 7 507 215 HOH HOH . J 5 HOH A 8 508 156 HOH HOH . J 5 HOH A 9 509 163 HOH HOH . J 5 HOH A 10 510 140 HOH HOH . J 5 HOH A 11 511 10 HOH HOH . J 5 HOH A 12 512 52 HOH HOH . J 5 HOH A 13 513 164 HOH HOH . J 5 HOH A 14 514 204 HOH HOH . J 5 HOH A 15 515 162 HOH HOH . J 5 HOH A 16 516 153 HOH HOH . J 5 HOH A 17 517 134 HOH HOH . J 5 HOH A 18 518 183 HOH HOH . J 5 HOH A 19 519 36 HOH HOH . J 5 HOH A 20 520 106 HOH HOH . J 5 HOH A 21 521 149 HOH HOH . J 5 HOH A 22 522 58 HOH HOH . J 5 HOH A 23 523 129 HOH HOH . J 5 HOH A 24 524 5 HOH HOH . J 5 HOH A 25 525 212 HOH HOH . J 5 HOH A 26 526 6 HOH HOH . J 5 HOH A 27 527 63 HOH HOH . J 5 HOH A 28 528 128 HOH HOH . J 5 HOH A 29 529 48 HOH HOH . J 5 HOH A 30 530 30 HOH HOH . J 5 HOH A 31 531 18 HOH HOH . J 5 HOH A 32 532 38 HOH HOH . J 5 HOH A 33 533 208 HOH HOH . J 5 HOH A 34 534 154 HOH HOH . J 5 HOH A 35 535 167 HOH HOH . J 5 HOH A 36 536 33 HOH HOH . J 5 HOH A 37 537 176 HOH HOH . J 5 HOH A 38 538 105 HOH HOH . J 5 HOH A 39 539 82 HOH HOH . J 5 HOH A 40 540 8 HOH HOH . J 5 HOH A 41 541 113 HOH HOH . J 5 HOH A 42 542 97 HOH HOH . J 5 HOH A 43 543 56 HOH HOH . J 5 HOH A 44 544 72 HOH HOH . J 5 HOH A 45 545 109 HOH HOH . J 5 HOH A 46 546 3 HOH HOH . J 5 HOH A 47 547 170 HOH HOH . J 5 HOH A 48 548 98 HOH HOH . J 5 HOH A 49 549 206 HOH HOH . J 5 HOH A 50 550 207 HOH HOH . J 5 HOH A 51 551 35 HOH HOH . J 5 HOH A 52 552 132 HOH HOH . J 5 HOH A 53 553 9 HOH HOH . J 5 HOH A 54 554 96 HOH HOH . J 5 HOH A 55 555 121 HOH HOH . J 5 HOH A 56 556 189 HOH HOH . J 5 HOH A 57 557 62 HOH HOH . J 5 HOH A 58 558 101 HOH HOH . J 5 HOH A 59 559 133 HOH HOH . J 5 HOH A 60 560 39 HOH HOH . J 5 HOH A 61 561 160 HOH HOH . J 5 HOH A 62 562 68 HOH HOH . J 5 HOH A 63 563 66 HOH HOH . J 5 HOH A 64 564 115 HOH HOH . J 5 HOH A 65 565 108 HOH HOH . J 5 HOH A 66 566 51 HOH HOH . J 5 HOH A 67 567 37 HOH HOH . J 5 HOH A 68 568 19 HOH HOH . J 5 HOH A 69 569 64 HOH HOH . J 5 HOH A 70 570 211 HOH HOH . J 5 HOH A 71 571 185 HOH HOH . J 5 HOH A 72 572 141 HOH HOH . J 5 HOH A 73 573 200 HOH HOH . J 5 HOH A 74 574 194 HOH HOH . J 5 HOH A 75 575 22 HOH HOH . J 5 HOH A 76 576 80 HOH HOH . J 5 HOH A 77 577 192 HOH HOH . J 5 HOH A 78 578 151 HOH HOH . J 5 HOH A 79 579 110 HOH HOH . J 5 HOH A 80 580 94 HOH HOH . J 5 HOH A 81 581 53 HOH HOH . J 5 HOH A 82 582 25 HOH HOH . J 5 HOH A 83 583 15 HOH HOH . J 5 HOH A 84 584 23 HOH HOH . J 5 HOH A 85 585 136 HOH HOH . J 5 HOH A 86 586 181 HOH HOH . J 5 HOH A 87 587 4 HOH HOH . J 5 HOH A 88 588 11 HOH HOH . J 5 HOH A 89 589 13 HOH HOH . J 5 HOH A 90 590 165 HOH HOH . J 5 HOH A 91 591 65 HOH HOH . J 5 HOH A 92 592 197 HOH HOH . J 5 HOH A 93 593 34 HOH HOH . J 5 HOH A 94 594 186 HOH HOH . J 5 HOH A 95 595 99 HOH HOH . J 5 HOH A 96 596 198 HOH HOH . J 5 HOH A 97 597 155 HOH HOH . J 5 HOH A 98 598 180 HOH HOH . J 5 HOH A 99 599 199 HOH HOH . J 5 HOH A 100 600 171 HOH HOH . J 5 HOH A 101 601 81 HOH HOH . J 5 HOH A 102 602 61 HOH HOH . J 5 HOH A 103 603 87 HOH HOH . J 5 HOH A 104 604 50 HOH HOH . J 5 HOH A 105 605 157 HOH HOH . J 5 HOH A 106 606 139 HOH HOH . J 5 HOH A 107 607 2 HOH HOH . J 5 HOH A 108 608 124 HOH HOH . J 5 HOH A 109 609 16 HOH HOH . J 5 HOH A 110 610 123 HOH HOH . J 5 HOH A 111 611 29 HOH HOH . J 5 HOH A 112 612 54 HOH HOH . J 5 HOH A 113 613 104 HOH HOH . J 5 HOH A 114 614 83 HOH HOH . J 5 HOH A 115 615 177 HOH HOH . J 5 HOH A 116 616 60 HOH HOH . J 5 HOH A 117 617 161 HOH HOH . J 5 HOH A 118 618 148 HOH HOH . J 5 HOH A 119 619 21 HOH HOH . J 5 HOH A 120 620 73 HOH HOH . J 5 HOH A 121 621 201 HOH HOH . J 5 HOH A 122 622 92 HOH HOH . J 5 HOH A 123 623 91 HOH HOH . J 5 HOH A 124 624 55 HOH HOH . J 5 HOH A 125 625 17 HOH HOH . J 5 HOH A 126 626 117 HOH HOH . J 5 HOH A 127 627 26 HOH HOH . J 5 HOH A 128 628 219 HOH HOH . J 5 HOH A 129 629 31 HOH HOH . J 5 HOH A 130 630 130 HOH HOH . J 5 HOH A 131 631 146 HOH HOH . J 5 HOH A 132 632 7 HOH HOH . J 5 HOH A 133 633 77 HOH HOH . J 5 HOH A 134 634 122 HOH HOH . J 5 HOH A 135 635 144 HOH HOH . J 5 HOH A 136 636 169 HOH HOH . J 5 HOH A 137 637 41 HOH HOH . J 5 HOH A 138 638 100 HOH HOH . J 5 HOH A 139 639 57 HOH HOH . J 5 HOH A 140 640 71 HOH HOH . J 5 HOH A 141 641 42 HOH HOH . J 5 HOH A 142 642 214 HOH HOH . J 5 HOH A 143 643 89 HOH HOH . J 5 HOH A 144 644 202 HOH HOH . J 5 HOH A 145 645 90 HOH HOH . J 5 HOH A 146 646 27 HOH HOH . J 5 HOH A 147 647 135 HOH HOH . J 5 HOH A 148 648 187 HOH HOH . J 5 HOH A 149 649 125 HOH HOH . J 5 HOH A 150 650 116 HOH HOH . J 5 HOH A 151 651 190 HOH HOH . J 5 HOH A 152 652 205 HOH HOH . J 5 HOH A 153 653 175 HOH HOH . J 5 HOH A 154 654 20 HOH HOH . J 5 HOH A 155 655 172 HOH HOH . J 5 HOH A 156 656 43 HOH HOH . J 5 HOH A 157 657 138 HOH HOH . J 5 HOH A 158 658 79 HOH HOH . J 5 HOH A 159 659 179 HOH HOH . J 5 HOH A 160 660 137 HOH HOH . J 5 HOH A 161 661 74 HOH HOH . J 5 HOH A 162 662 127 HOH HOH . J 5 HOH A 163 663 142 HOH HOH . J 5 HOH A 164 664 182 HOH HOH . J 5 HOH A 165 665 191 HOH HOH . J 5 HOH A 166 666 216 HOH HOH . J 5 HOH A 167 667 147 HOH HOH . J 5 HOH A 168 668 203 HOH HOH . J 5 HOH A 169 669 103 HOH HOH . J 5 HOH A 170 670 218 HOH HOH . J 5 HOH A 171 671 166 HOH HOH . J 5 HOH A 172 672 158 HOH HOH . J 5 HOH A 173 673 174 HOH HOH . J 5 HOH A 174 674 184 HOH HOH . J 5 HOH A 175 675 111 HOH HOH . J 5 HOH A 176 676 209 HOH HOH . J 5 HOH A 177 677 24 HOH HOH . J 5 HOH A 178 678 14 HOH HOH . J 5 HOH A 179 679 143 HOH HOH . J 5 HOH A 180 680 69 HOH HOH . J 5 HOH A 181 681 88 HOH HOH . J 5 HOH A 182 682 193 HOH HOH . J 5 HOH A 183 683 213 HOH HOH . J 5 HOH A 184 684 196 HOH HOH . J 5 HOH A 185 685 47 HOH HOH . J 5 HOH A 186 686 131 HOH HOH . J 5 HOH A 187 687 145 HOH HOH . J 5 HOH A 188 688 59 HOH HOH . J 5 HOH A 189 689 217 HOH HOH . J 5 HOH A 190 690 195 HOH HOH . J 5 HOH A 191 691 120 HOH HOH . J 5 HOH A 192 692 173 HOH HOH . J 5 HOH A 193 693 188 HOH HOH . J 5 HOH A 194 694 85 HOH HOH . J 5 HOH A 195 695 118 HOH HOH . J 5 HOH A 196 696 114 HOH HOH . J 5 HOH A 197 697 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 4 -116.612 -181.133 302.341 1 89.15 ? PG ATP 408 A 1 HETATM 2 O O1G ATP . . . I 4 -116.834 -181.912 301.062 1 89.21 ? O1G ATP 408 A 1 HETATM 3 O O2G ATP . . . I 4 -115.469 -180.169 302.321 1 89.68 ? O2G ATP 408 A 1 HETATM 4 O O3G ATP . . . I 4 -116.69 -182.111 303.439 1 89.26 ? O3G ATP 408 A 1 HETATM 5 P PB ATP . . . I 4 -118.811 -179.18 303.482 1 84.07 ? PB ATP 408 A 1 HETATM 6 O O1B ATP . . . I 4 -118.132 -178.201 304.352 1 83.45 ? O1B ATP 408 A 1 HETATM 7 O O2B ATP . . . I 4 -120.005 -178.659 302.731 1 84.86 ? O2B ATP 408 A 1 HETATM 8 O O3B ATP . . . I 4 -117.8 -179.973 302.421 1 86.97 ? O3B ATP 408 A 1 HETATM 9 P PA ATP . . . I 4 -121.195 -180.632 304.298 1 72.33 ? PA ATP 408 A 1 HETATM 10 O O1A ATP . . . I 4 -121.285 -182.072 304.769 1 73.25 ? O1A ATP 408 A 1 HETATM 11 O O2A ATP . . . I 4 -121.965 -180.253 303.106 1 72.2 ? O2A ATP 408 A 1 HETATM 12 O O3A ATP . . . I 4 -119.591 -180.428 304.202 1 79.02 ? O3A ATP 408 A 1 HETATM 13 O O5' ATP . . . I 4 -121.621 -179.609 305.439 1 63.87 ? O5' ATP 408 A 1 HETATM 14 C C5' ATP . . . I 4 -122.49 -178.48 305.311 1 56.35 ? C5' ATP 408 A 1 HETATM 15 C C4' ATP . . . I 4 -122.404 -177.645 306.559 1 49.73 ? C4' ATP 408 A 1 HETATM 16 O O4' ATP . . . I 4 -122.757 -178.404 307.721 1 44.76 ? O4' ATP 408 A 1 HETATM 17 C C3' ATP . . . I 4 -120.946 -177.332 306.8 1 47.04 ? C3' ATP 408 A 1 HETATM 18 O O3' ATP . . . I 4 -120.715 -175.97 307.011 1 47.9 ? O3' ATP 408 A 1 HETATM 19 C C2' ATP . . . I 4 -120.594 -178.052 308.093 1 44.06 ? C2' ATP 408 A 1 HETATM 20 O O2' ATP . . . I 4 -119.675 -177.321 308.883 1 44.11 ? O2' ATP 408 A 1 HETATM 21 C C1' ATP . . . I 4 -121.919 -178.128 308.811 1 40.91 ? C1' ATP 408 A 1 HETATM 22 N N9 ATP . . . I 4 -122.007 -179.153 309.878 1 35.46 ? N9 ATP 408 A 1 HETATM 23 C C8 ATP . . . I 4 -121.881 -180.472 309.757 1 33.37 ? C8 ATP 408 A 1 HETATM 24 N N7 ATP . . . I 4 -122.047 -181.047 310.963 1 33.89 ? N7 ATP 408 A 1 HETATM 25 C C5 ATP . . . I 4 -122.257 -180.121 311.863 1 31.96 ? C5 ATP 408 A 1 HETATM 26 C C6 ATP . . . I 4 -122.499 -180.072 313.309 1 32.58 ? C6 ATP 408 A 1 HETATM 27 N N6 ATP . . . I 4 -122.537 -181.163 314.036 1 30.87 ? N6 ATP 408 A 1 HETATM 28 N N1 ATP . . . I 4 -122.696 -178.874 313.898 1 34.65 ? N1 ATP 408 A 1 HETATM 29 C C2 ATP . . . I 4 -122.66 -177.767 313.168 1 34.92 ? C2 ATP 408 A 1 HETATM 30 N N3 ATP . . . I 4 -122.457 -177.758 311.861 1 35.33 ? N3 ATP 408 A 1 HETATM 31 C C4 ATP . . . I 4 -122.234 -178.872 311.143 1 34.16 ? C4 ATP 408 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #