data_8AF2 # _model_server_result.job_id Xm5E2Isn8qMVfkIlotUpgQ _model_server_result.datetime_utc '2025-08-04 07:42:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8af2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8AF2 # _exptl.entry_id 8AF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRAGMENT OF TRITON X-100' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.732 _cell.angle_gamma 90 _cell.entry_id 8AF2 _cell.length_a 34.512 _cell.length_b 50.523 _cell.length_c 62.211 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 110 A LEU 110 1_555 A N BP5 111 A BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C BP5 111 A BP5 111 1_555 A N MET 112 A MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LEU 110 B LEU 110 1_555 B N BP5 111 B BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C BP5 111 B BP5 111 1_555 B N MET 112 B MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A N1 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A N2 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 F CU CU . A CU 204 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc4 F CU CU . A CU 204 1_555 J O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 F CU CU . A CU 204 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 F CU CU . A CU 204 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 B N1 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 B N2 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 I CU CU . B CU 203 1_555 K O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc10 I CU CU . B CU 203 1_555 K O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc11 I CU CU . B CU 203 1_555 K O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc12 I CU CU . B CU 203 1_555 K O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C21 H36 O4' _chem_comp.formula_weight 352.508 _chem_comp.id TRT _chem_comp.mon_nstd_flag . _chem_comp.name 'FRAGMENT OF TRITON X-100' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O24 TRT sing 357 n n C25 H251 TRT sing 358 n n C25 H252 TRT sing 359 n n C25 H253 TRT sing 360 n n O24 C23 TRT sing 361 n n C23 C22 TRT sing 362 n n C23 H231 TRT sing 363 n n C23 H232 TRT sing 364 n n C22 O21 TRT sing 365 n n C22 H221 TRT sing 366 n n C22 H222 TRT sing 367 n n O21 C20 TRT sing 368 n n C20 C19 TRT sing 369 n n C20 H201 TRT sing 370 n n C20 H202 TRT sing 371 n n C19 O18 TRT sing 372 n n C19 H191 TRT sing 373 n n C19 H192 TRT sing 374 n n O18 C17 TRT sing 375 n n C17 C16 TRT sing 376 n n C17 H171 TRT sing 377 n n C17 H172 TRT sing 378 n n C16 O15 TRT sing 379 n n C16 H161 TRT sing 380 n n C16 H162 TRT sing 381 n n O15 C12 TRT sing 382 n n C12 C13 TRT doub 383 n y C12 C11 TRT sing 384 n y C13 C14 TRT sing 385 n y C13 H13 TRT sing 386 n n C14 C9 TRT doub 387 n y C14 H14 TRT sing 388 n n C11 C10 TRT doub 389 n y C11 H11 TRT sing 390 n n C10 C9 TRT sing 391 n y C10 H10 TRT sing 392 n n C9 C6 TRT sing 393 n n C6 C8 TRT sing 394 n n C6 C7 TRT sing 395 n n C6 C5 TRT sing 396 n n C8 H8C1 TRT sing 397 n n C8 H8C2 TRT sing 398 n n C8 H8C3 TRT sing 399 n n C7 H7C1 TRT sing 400 n n C7 H7C2 TRT sing 401 n n C7 H7C3 TRT sing 402 n n C5 C1 TRT sing 403 n n C5 H5C1 TRT sing 404 n n C5 H5C2 TRT sing 405 n n C1 C2 TRT sing 406 n n C1 C4 TRT sing 407 n n C1 C3 TRT sing 408 n n C2 H2C1 TRT sing 409 n n C2 H2C2 TRT sing 410 n n C2 H2C3 TRT sing 411 n n C4 H4C1 TRT sing 412 n n C4 H4C2 TRT sing 413 n n C4 H4C3 TRT sing 414 n n C3 H3C1 TRT sing 415 n n C3 H3C2 TRT sing 416 n n C3 H3C3 TRT sing 417 n n # _atom_sites.entry_id 8AF2 _atom_sites.fract_transf_matrix[1][1] 0.028975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRT A 1 201 1 TRT TRT . D 2 TRT A 1 202 3 TRT TRT . E 3 SO4 A 1 203 3 SO4 SO4 . F 4 CU A 1 204 1 CU CU . G 2 TRT B 1 201 2 TRT TRT . H 3 SO4 B 1 202 4 SO4 SO4 . I 4 CU B 1 203 2 CU CU . J 5 HOH A 1 301 23 HOH HOH . J 5 HOH A 2 302 17 HOH HOH . J 5 HOH A 3 303 25 HOH HOH . J 5 HOH A 4 304 18 HOH HOH . J 5 HOH A 5 305 29 HOH HOH . J 5 HOH A 6 306 2 HOH HOH . J 5 HOH A 7 307 9 HOH HOH . J 5 HOH A 8 308 16 HOH HOH . J 5 HOH A 9 309 15 HOH HOH . J 5 HOH A 10 310 8 HOH HOH . J 5 HOH A 11 311 26 HOH HOH . J 5 HOH A 12 312 28 HOH HOH . K 5 HOH B 1 301 19 HOH HOH . K 5 HOH B 2 302 12 HOH HOH . K 5 HOH B 3 303 13 HOH HOH . K 5 HOH B 4 304 20 HOH HOH . K 5 HOH B 5 305 5 HOH HOH . K 5 HOH B 6 306 22 HOH HOH . K 5 HOH B 7 307 21 HOH HOH . K 5 HOH B 8 308 27 HOH HOH . K 5 HOH B 9 309 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TRT . . . C 2 3.532 19.336 -0.067 1 64.86 ? C25 TRT 201 A 1 HETATM 2 O O24 TRT . . . C 2 2.898 18.121 -0.371 1 52.91 ? O24 TRT 201 A 1 HETATM 3 C C23 TRT . . . C 2 1.583 18.025 0.144 1 51.94 ? C23 TRT 201 A 1 HETATM 4 C C22 TRT . . . C 2 1.169 16.537 0.184 1 52.7 ? C22 TRT 201 A 1 HETATM 5 O O21 TRT . . . C 2 2.048 15.849 1.06 1 56.07 ? O21 TRT 201 A 1 HETATM 6 C C20 TRT . . . C 2 2.16 14.466 0.808 1 47.54 ? C20 TRT 201 A 1 HETATM 7 C C19 TRT . . . C 2 3.178 13.878 1.813 1 52.93 ? C19 TRT 201 A 1 HETATM 8 O O18 TRT . . . C 2 3.49 12.564 1.459 1 43.15 ? O18 TRT 201 A 1 HETATM 9 C C17 TRT . . . C 2 3.349 11.642 2.517 1 40.9 ? C17 TRT 201 A 1 HETATM 10 C C16 TRT . . . C 2 4.349 10.5 2.326 1 40.46 ? C16 TRT 201 A 1 HETATM 11 O O15 TRT . . . C 2 4.523 10.273 0.946 1 47.72 ? O15 TRT 201 A 1 HETATM 12 C C12 TRT . . . C 2 5.011 8.976 0.689 1 27.48 ? C12 TRT 201 A 1 HETATM 13 C C13 TRT . . . C 2 4.122 7.937 0.448 1 40.7 ? C13 TRT 201 A 1 HETATM 14 C C14 TRT . . . C 2 4.604 6.659 0.203 1 44.13 ? C14 TRT 201 A 1 HETATM 15 C C11 TRT . . . C 2 6.371 8.749 0.691 1 39.26 ? C11 TRT 201 A 1 HETATM 16 C C10 TRT . . . C 2 6.854 7.471 0.443 1 39.94 ? C10 TRT 201 A 1 HETATM 17 C C9 TRT . . . C 2 5.974 6.431 0.187 1 36.85 ? C9 TRT 201 A 1 HETATM 18 C C6 TRT . . . C 2 6.559 4.998 -0.07 1 43.42 ? C6 TRT 201 A 1 HETATM 19 C C8 TRT . . . C 2 7.893 5.17 -0.825 1 59.51 ? C8 TRT 201 A 1 HETATM 20 C C7 TRT . . . C 2 5.591 4.134 -0.898 1 45.64 ? C7 TRT 201 A 1 HETATM 21 C C5 TRT . . . C 2 6.742 4.461 1.409 1 47.31 ? C5 TRT 201 A 1 HETATM 22 C C1 TRT . . . C 2 7.206 2.954 1.613 1 48.58 ? C1 TRT 201 A 1 HETATM 23 C C2 TRT . . . C 2 8.177 2.471 0.55 1 56.24 ? C2 TRT 201 A 1 HETATM 24 C C4 TRT . . . C 2 5.999 2.006 1.671 1 70.22 ? C4 TRT 201 A 1 HETATM 25 C C3 TRT . . . C 2 7.9 2.94 2.999 1 56.23 ? C3 TRT 201 A 1 HETATM 26 H H251 TRT . . . C 2 3.059 20.065 -0.498 1 78.02 ? H251 TRT 201 A 1 HETATM 27 H H252 TRT . . . C 2 3.527 19.472 0.894 1 78.02 ? H252 TRT 201 A 1 HETATM 28 H H253 TRT . . . C 2 4.448 19.312 -0.385 1 78.02 ? H253 TRT 201 A 1 HETATM 29 H H231 TRT . . . C 2 0.972 18.518 -0.427 1 62.53 ? H231 TRT 201 A 1 HETATM 30 H H232 TRT . . . C 2 1.556 18.395 1.04 1 62.53 ? H232 TRT 201 A 1 HETATM 31 H H221 TRT . . . C 2 0.258 16.458 0.506 1 63.43 ? H221 TRT 201 A 1 HETATM 32 H H222 TRT . . . C 2 1.231 16.156 -0.706 1 63.43 ? H222 TRT 201 A 1 HETATM 33 H H201 TRT . . . C 2 1.297 14.039 0.926 1 57.24 ? H201 TRT 201 A 1 HETATM 34 H H202 TRT . . . C 2 2.471 14.321 -0.099 1 57.24 ? H202 TRT 201 A 1 HETATM 35 H H191 TRT . . . C 2 3.986 14.414 1.803 1 63.71 ? H191 TRT 201 A 1 HETATM 36 H H192 TRT . . . C 2 2.794 13.888 2.703 1 63.71 ? H192 TRT 201 A 1 HETATM 37 H H171 TRT . . . C 2 2.447 11.286 2.52 1 49.27 ? H171 TRT 201 A 1 HETATM 38 H H172 TRT . . . C 2 3.524 12.088 3.361 1 49.27 ? H172 TRT 201 A 1 HETATM 39 H H161 TRT . . . C 2 4.009 9.696 2.748 1 48.74 ? H161 TRT 201 A 1 HETATM 40 H H162 TRT . . . C 2 5.199 10.741 2.726 1 48.74 ? H162 TRT 201 A 1 HETATM 41 H H13 TRT . . . C 2 3.206 8.097 0.45 1 49.04 ? H13 TRT 201 A 1 HETATM 42 H H14 TRT . . . C 2 4.012 5.959 0.05 1 53.14 ? H14 TRT 201 A 1 HETATM 43 H H11 TRT . . . C 2 6.961 9.449 0.857 1 47.3 ? H11 TRT 201 A 1 HETATM 44 H H10 TRT . . . C 2 7.77 7.313 0.449 1 48.13 ? H10 TRT 201 A 1 HETATM 45 H H8C1 TRT . . . C 2 8.587 5.429 -0.199 1 71.6 ? H8C1 TRT 201 A 1 HETATM 46 H H8C2 TRT . . . C 2 8.135 4.332 -1.248 1 71.6 ? H8C2 TRT 201 A 1 HETATM 47 H H8C3 TRT . . . C 2 7.794 5.858 -1.502 1 71.6 ? H8C3 TRT 201 A 1 HETATM 48 H H7C1 TRT . . . C 2 5.046 3.597 -0.302 1 54.95 ? H7C1 TRT 201 A 1 HETATM 49 H H7C2 TRT . . . C 2 5.019 4.709 -1.43 1 54.95 ? H7C2 TRT 201 A 1 HETATM 50 H H7C3 TRT . . . C 2 6.099 3.551 -1.485 1 54.95 ? H7C3 TRT 201 A 1 HETATM 51 H H5C1 TRT . . . C 2 5.889 4.562 1.859 1 56.97 ? H5C1 TRT 201 A 1 HETATM 52 H H5C2 TRT . . . C 2 7.403 5.026 1.84 1 56.97 ? H5C2 TRT 201 A 1 HETATM 53 H H2C1 TRT . . . C 2 8.956 3.049 0.536 1 67.68 ? H2C1 TRT 201 A 1 HETATM 54 H H2C2 TRT . . . C 2 8.452 1.563 0.753 1 67.68 ? H2C2 TRT 201 A 1 HETATM 55 H H2C3 TRT . . . C 2 7.743 2.492 -0.317 1 67.68 ? H2C3 TRT 201 A 1 HETATM 56 H H4C1 TRT . . . C 2 6.106 1.305 1.01 1 84.46 ? H4C1 TRT 201 A 1 HETATM 57 H H4C2 TRT . . . C 2 5.94 1.612 2.555 1 84.46 ? H4C2 TRT 201 A 1 HETATM 58 H H4C3 TRT . . . C 2 5.188 2.505 1.485 1 84.46 ? H4C3 TRT 201 A 1 HETATM 59 H H3C1 TRT . . . C 2 8.065 2.023 3.269 1 67.67 ? H3C1 TRT 201 A 1 HETATM 60 H H3C2 TRT . . . C 2 8.743 3.418 2.943 1 67.67 ? H3C2 TRT 201 A 1 HETATM 61 H H3C3 TRT . . . C 2 7.327 3.372 3.652 1 67.67 ? H3C3 TRT 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 61 #