data_8AF2 # _model_server_result.job_id xDyVf_oVPjeTtBtMh4lSIw _model_server_result.datetime_utc '2025-06-18 09:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8af2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 8AF2 # _exptl.entry_id 8AF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRAGMENT OF TRITON X-100' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.732 _cell.angle_gamma 90 _cell.entry_id 8AF2 _cell.length_a 34.512 _cell.length_b 50.523 _cell.length_c 62.211 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 110 A LEU 110 1_555 A N BP5 111 A BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C BP5 111 A BP5 111 1_555 A N MET 112 A MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LEU 110 B LEU 110 1_555 B N BP5 111 B BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C BP5 111 B BP5 111 1_555 B N MET 112 B MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A N1 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A N2 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 F CU CU . A CU 204 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc4 F CU CU . A CU 204 1_555 J O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 F CU CU . A CU 204 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 F CU CU . A CU 204 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 B N1 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 B N2 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 I CU CU . B CU 203 1_555 K O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc10 I CU CU . B CU 203 1_555 K O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc11 I CU CU . B CU 203 1_555 K O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc12 I CU CU . B CU 203 1_555 K O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C21 H36 O4' _chem_comp.formula_weight 352.508 _chem_comp.id TRT _chem_comp.mon_nstd_flag . _chem_comp.name 'FRAGMENT OF TRITON X-100' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O24 TRT sing 357 n n C25 H251 TRT sing 358 n n C25 H252 TRT sing 359 n n C25 H253 TRT sing 360 n n O24 C23 TRT sing 361 n n C23 C22 TRT sing 362 n n C23 H231 TRT sing 363 n n C23 H232 TRT sing 364 n n C22 O21 TRT sing 365 n n C22 H221 TRT sing 366 n n C22 H222 TRT sing 367 n n O21 C20 TRT sing 368 n n C20 C19 TRT sing 369 n n C20 H201 TRT sing 370 n n C20 H202 TRT sing 371 n n C19 O18 TRT sing 372 n n C19 H191 TRT sing 373 n n C19 H192 TRT sing 374 n n O18 C17 TRT sing 375 n n C17 C16 TRT sing 376 n n C17 H171 TRT sing 377 n n C17 H172 TRT sing 378 n n C16 O15 TRT sing 379 n n C16 H161 TRT sing 380 n n C16 H162 TRT sing 381 n n O15 C12 TRT sing 382 n n C12 C13 TRT doub 383 n y C12 C11 TRT sing 384 n y C13 C14 TRT sing 385 n y C13 H13 TRT sing 386 n n C14 C9 TRT doub 387 n y C14 H14 TRT sing 388 n n C11 C10 TRT doub 389 n y C11 H11 TRT sing 390 n n C10 C9 TRT sing 391 n y C10 H10 TRT sing 392 n n C9 C6 TRT sing 393 n n C6 C8 TRT sing 394 n n C6 C7 TRT sing 395 n n C6 C5 TRT sing 396 n n C8 H8C1 TRT sing 397 n n C8 H8C2 TRT sing 398 n n C8 H8C3 TRT sing 399 n n C7 H7C1 TRT sing 400 n n C7 H7C2 TRT sing 401 n n C7 H7C3 TRT sing 402 n n C5 C1 TRT sing 403 n n C5 H5C1 TRT sing 404 n n C5 H5C2 TRT sing 405 n n C1 C2 TRT sing 406 n n C1 C4 TRT sing 407 n n C1 C3 TRT sing 408 n n C2 H2C1 TRT sing 409 n n C2 H2C2 TRT sing 410 n n C2 H2C3 TRT sing 411 n n C4 H4C1 TRT sing 412 n n C4 H4C2 TRT sing 413 n n C4 H4C3 TRT sing 414 n n C3 H3C1 TRT sing 415 n n C3 H3C2 TRT sing 416 n n C3 H3C3 TRT sing 417 n n # _atom_sites.entry_id 8AF2 _atom_sites.fract_transf_matrix[1][1] 0.028975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRT A 1 201 1 TRT TRT . D 2 TRT A 1 202 3 TRT TRT . E 3 SO4 A 1 203 3 SO4 SO4 . F 4 CU A 1 204 1 CU CU . G 2 TRT B 1 201 2 TRT TRT . H 3 SO4 B 1 202 4 SO4 SO4 . I 4 CU B 1 203 2 CU CU . J 5 HOH A 1 301 23 HOH HOH . J 5 HOH A 2 302 17 HOH HOH . J 5 HOH A 3 303 25 HOH HOH . J 5 HOH A 4 304 18 HOH HOH . J 5 HOH A 5 305 29 HOH HOH . J 5 HOH A 6 306 2 HOH HOH . J 5 HOH A 7 307 9 HOH HOH . J 5 HOH A 8 308 16 HOH HOH . J 5 HOH A 9 309 15 HOH HOH . J 5 HOH A 10 310 8 HOH HOH . J 5 HOH A 11 311 26 HOH HOH . J 5 HOH A 12 312 28 HOH HOH . K 5 HOH B 1 301 19 HOH HOH . K 5 HOH B 2 302 12 HOH HOH . K 5 HOH B 3 303 13 HOH HOH . K 5 HOH B 4 304 20 HOH HOH . K 5 HOH B 5 305 5 HOH HOH . K 5 HOH B 6 306 22 HOH HOH . K 5 HOH B 7 307 21 HOH HOH . K 5 HOH B 8 308 27 HOH HOH . K 5 HOH B 9 309 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TRT . . . G 2 14.479 -18.844 -33.601 1 75.02 ? C25 TRT 201 B 1 HETATM 2 O O24 TRT . . . G 2 15.365 -17.991 -32.923 1 77.51 ? O24 TRT 201 B 1 HETATM 3 C C23 TRT . . . G 2 14.988 -17.795 -31.574 1 61.11 ? C23 TRT 201 B 1 HETATM 4 C C22 TRT . . . G 2 15.92 -16.775 -30.888 1 63.59 ? C22 TRT 201 B 1 HETATM 5 O O21 TRT . . . G 2 15.588 -15.458 -31.289 1 60.83 ? O21 TRT 201 B 1 HETATM 6 C C20 TRT . . . G 2 15.09 -14.62 -30.265 1 52.62 ? C20 TRT 201 B 1 HETATM 7 C C19 TRT . . . G 2 14.322 -13.465 -30.949 1 51.85 ? C19 TRT 201 B 1 HETATM 8 O O18 TRT . . . G 2 13.736 -12.599 -30.032 1 56.48 ? O18 TRT 201 B 1 HETATM 9 C C17 TRT . . . G 2 12.645 -11.898 -30.59 1 59.13 ? C17 TRT 201 B 1 HETATM 10 C C16 TRT . . . G 2 13.023 -10.426 -30.763 1 46.43 ? C16 TRT 201 B 1 HETATM 11 O O15 TRT . . . G 2 13.115 -9.829 -29.489 1 56.41 ? O15 TRT 201 B 1 HETATM 12 C C12 TRT . . . G 2 12.828 -8.45 -29.522 1 47.31 ? C12 TRT 201 B 1 HETATM 13 C C13 TRT . . . G 2 13.834 -7.525 -29.281 1 49.63 ? C13 TRT 201 B 1 HETATM 14 C C14 TRT . . . G 2 13.54 -6.171 -29.321 1 55.26 ? C14 TRT 201 B 1 HETATM 15 C C11 TRT . . . G 2 11.54 -8.031 -29.805 1 47.18 ? C11 TRT 201 B 1 HETATM 16 C C10 TRT . . . G 2 11.247 -6.674 -29.849 1 53.98 ? C10 TRT 201 B 1 HETATM 17 C C9 TRT . . . G 2 12.245 -5.747 -29.6 1 55.39 ? C9 TRT 201 B 1 HETATM 18 C C6 TRT . . . G 2 11.925 -4.212 -29.653 1 57.63 ? C6 TRT 201 B 1 HETATM 19 C C8 TRT . . . G 2 12.682 -3.51 -28.513 1 60.37 ? C8 TRT 201 B 1 HETATM 20 C C7 TRT . . . G 2 10.431 -3.982 -29.367 1 46.62 ? C7 TRT 201 B 1 HETATM 21 C C5 TRT . . . G 2 12.494 -3.667 -31.037 1 61.43 ? C5 TRT 201 B 1 HETATM 22 C C1 TRT . . . G 2 11.452 -3.431 -32.219 1 53.92 ? C1 TRT 201 B 1 HETATM 23 C C2 TRT . . . G 2 10.752 -4.731 -32.589 1 60.23 ? C2 TRT 201 B 1 HETATM 24 C C4 TRT . . . G 2 12.234 -2.958 -33.454 1 65.89 ? C4 TRT 201 B 1 HETATM 25 C C3 TRT . . . G 2 10.479 -2.282 -31.845 1 57.75 ? C3 TRT 201 B 1 HETATM 26 H H251 TRT . . . G 2 14.635 -18.778 -34.557 1 90.21 ? H251 TRT 201 B 1 HETATM 27 H H252 TRT . . . G 2 14.624 -19.758 -33.312 1 90.21 ? H252 TRT 201 B 1 HETATM 28 H H253 TRT . . . G 2 13.565 -18.584 -33.405 1 90.21 ? H253 TRT 201 B 1 HETATM 29 H H231 TRT . . . G 2 14.076 -17.465 -31.544 1 73.53 ? H231 TRT 201 B 1 HETATM 30 H H232 TRT . . . G 2 15.04 -18.642 -31.104 1 73.53 ? H232 TRT 201 B 1 HETATM 31 H H221 TRT . . . G 2 15.823 -16.85 -29.925 1 76.5 ? H221 TRT 201 B 1 HETATM 32 H H222 TRT . . . G 2 16.838 -16.963 -31.136 1 76.5 ? H222 TRT 201 B 1 HETATM 33 H H201 TRT . . . G 2 14.492 -15.12 -29.687 1 63.34 ? H201 TRT 201 B 1 HETATM 34 H H202 TRT . . . G 2 15.824 -14.265 -29.739 1 63.34 ? H202 TRT 201 B 1 HETATM 35 H H191 TRT . . . G 2 13.626 -13.843 -31.509 1 62.42 ? H191 TRT 201 B 1 HETATM 36 H H192 TRT . . . G 2 14.942 -12.963 -31.5 1 62.42 ? H192 TRT 201 B 1 HETATM 37 H H171 TRT . . . G 2 11.88 -11.968 -29.998 1 71.15 ? H171 TRT 201 B 1 HETATM 38 H H172 TRT . . . G 2 12.423 -12.279 -31.453 1 71.15 ? H172 TRT 201 B 1 HETATM 39 H H161 TRT . . . G 2 12.342 -9.974 -31.286 1 55.91 ? H161 TRT 201 B 1 HETATM 40 H H162 TRT . . . G 2 13.877 -10.36 -31.217 1 55.91 ? H162 TRT 201 B 1 HETATM 41 H H13 TRT . . . G 2 14.699 -7.811 -29.094 1 59.75 ? H13 TRT 201 B 1 HETATM 42 H H14 TRT . . . G 2 14.21 -5.545 -29.162 1 66.5 ? H14 TRT 201 B 1 HETATM 43 H H11 TRT . . . G 2 10.872 -8.657 -29.966 1 56.81 ? H11 TRT 201 B 1 HETATM 44 H H10 TRT . . . G 2 10.384 -6.39 -30.044 1 64.97 ? H10 TRT 201 B 1 HETATM 45 H H8C1 TRT . . . G 2 13.637 -3.601 -28.654 1 72.64 ? H8C1 TRT 201 B 1 HETATM 46 H H8C2 TRT . . . G 2 12.445 -2.569 -28.499 1 72.64 ? H8C2 TRT 201 B 1 HETATM 47 H H8C3 TRT . . . G 2 12.44 -3.917 -27.666 1 72.64 ? H8C3 TRT 201 B 1 HETATM 48 H H7C1 TRT . . . G 2 9.903 -4.349 -30.093 1 56.14 ? H7C1 TRT 201 B 1 HETATM 49 H H7C2 TRT . . . G 2 10.19 -4.423 -28.537 1 56.14 ? H7C2 TRT 201 B 1 HETATM 50 H H7C3 TRT . . . G 2 10.26 -3.031 -29.29 1 56.14 ? H7C3 TRT 201 B 1 HETATM 51 H H5C1 TRT . . . G 2 13.152 -4.306 -31.353 1 73.9 ? H5C1 TRT 201 B 1 HETATM 52 H H5C2 TRT . . . G 2 12.929 -2.818 -30.858 1 73.9 ? H5C2 TRT 201 B 1 HETATM 53 H H2C1 TRT . . . G 2 11.388 -5.462 -32.554 1 72.47 ? H2C1 TRT 201 B 1 HETATM 54 H H2C2 TRT . . . G 2 10.031 -4.899 -31.961 1 72.47 ? H2C2 TRT 201 B 1 HETATM 55 H H2C3 TRT . . . G 2 10.39 -4.659 -33.486 1 72.47 ? H2C3 TRT 201 B 1 HETATM 56 H H4C1 TRT . . . G 2 12.289 -1.989 -33.45 1 79.26 ? H4C1 TRT 201 B 1 HETATM 57 H H4C2 TRT . . . G 2 13.128 -3.333 -33.434 1 79.26 ? H4C2 TRT 201 B 1 HETATM 58 H H4C3 TRT . . . G 2 11.777 -3.253 -34.258 1 79.26 ? H4C3 TRT 201 B 1 HETATM 59 H H3C1 TRT . . . G 2 10.905 -1.694 -31.202 1 69.49 ? H3C1 TRT 201 B 1 HETATM 60 H H3C2 TRT . . . G 2 10.252 -1.778 -32.643 1 69.49 ? H3C2 TRT 201 B 1 HETATM 61 H H3C3 TRT . . . G 2 9.672 -2.655 -31.458 1 69.49 ? H3C3 TRT 201 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 61 #