data_8AF2
#
_model_server_result.job_id            Y1RLGc-78Z_mB4TWZJNoYQ 
_model_server_result.datetime_utc      '2024-11-19 16:38:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8af2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    8AF2 
#
_exptl.entry_id    8AF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.508 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FRAGMENT OF TRITON X-100' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.732 
_cell.angle_gamma         90 
_cell.entry_id            8AF2 
_cell.length_a            34.512 
_cell.length_b            50.523 
_cell.length_c            62.211 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 110 A LEU 110 1_555 A N BP5 111 A BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C BP5 111 A BP5 111 1_555 A N MET 112 A MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C LEU 110 B LEU 110 1_555 B N BP5 111 B BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 B C BP5 111 B BP5 111 1_555 B N MET 112 B MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A N1 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc2 A N2 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc3 F CU CU . A CU 204 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc4 F CU CU . A CU 204 1_555 J O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc5 F CU CU . A CU 204 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc6 F CU CU . A CU 204 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc7 B N1 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc8 B N2 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc9 I CU CU . B CU 203 1_555 K O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? 
metalc ? metalc10 I CU CU . B CU 203 1_555 K O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
metalc ? metalc11 I CU CU . B CU 203 1_555 K O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc12 I CU CU . B CU 203 1_555 K O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
#
_chem_comp.formula           'C21 H36 O4' 
_chem_comp.formula_weight    352.508 
_chem_comp.id                TRT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FRAGMENT OF TRITON X-100' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 O24 TRT sing 357 n n 
C25 H251 TRT sing 358 n n 
C25 H252 TRT sing 359 n n 
C25 H253 TRT sing 360 n n 
O24 C23 TRT sing 361 n n 
C23 C22 TRT sing 362 n n 
C23 H231 TRT sing 363 n n 
C23 H232 TRT sing 364 n n 
C22 O21 TRT sing 365 n n 
C22 H221 TRT sing 366 n n 
C22 H222 TRT sing 367 n n 
O21 C20 TRT sing 368 n n 
C20 C19 TRT sing 369 n n 
C20 H201 TRT sing 370 n n 
C20 H202 TRT sing 371 n n 
C19 O18 TRT sing 372 n n 
C19 H191 TRT sing 373 n n 
C19 H192 TRT sing 374 n n 
O18 C17 TRT sing 375 n n 
C17 C16 TRT sing 376 n n 
C17 H171 TRT sing 377 n n 
C17 H172 TRT sing 378 n n 
C16 O15 TRT sing 379 n n 
C16 H161 TRT sing 380 n n 
C16 H162 TRT sing 381 n n 
O15 C12 TRT sing 382 n n 
C12 C13 TRT doub 383 n y 
C12 C11 TRT sing 384 n y 
C13 C14 TRT sing 385 n y 
C13 H13 TRT sing 386 n n 
C14 C9 TRT doub 387 n y 
C14 H14 TRT sing 388 n n 
C11 C10 TRT doub 389 n y 
C11 H11 TRT sing 390 n n 
C10 C9 TRT sing 391 n y 
C10 H10 TRT sing 392 n n 
C9 C6 TRT sing 393 n n 
C6 C8 TRT sing 394 n n 
C6 C7 TRT sing 395 n n 
C6 C5 TRT sing 396 n n 
C8 H8C1 TRT sing 397 n n 
C8 H8C2 TRT sing 398 n n 
C8 H8C3 TRT sing 399 n n 
C7 H7C1 TRT sing 400 n n 
C7 H7C2 TRT sing 401 n n 
C7 H7C3 TRT sing 402 n n 
C5 C1 TRT sing 403 n n 
C5 H5C1 TRT sing 404 n n 
C5 H5C2 TRT sing 405 n n 
C1 C2 TRT sing 406 n n 
C1 C4 TRT sing 407 n n 
C1 C3 TRT sing 408 n n 
C2 H2C1 TRT sing 409 n n 
C2 H2C2 TRT sing 410 n n 
C2 H2C3 TRT sing 411 n n 
C4 H4C1 TRT sing 412 n n 
C4 H4C2 TRT sing 413 n n 
C4 H4C3 TRT sing 414 n n 
C3 H3C1 TRT sing 415 n n 
C3 H3C2 TRT sing 416 n n 
C3 H3C3 TRT sing 417 n n 
#
_atom_sites.entry_id                     8AF2 
_atom_sites.fract_transf_matrix[1][1]    0.028975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00037 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019793 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TRT A 1 201 1 TRT TRT . 
D 2 TRT A 1 202 3 TRT TRT . 
E 3 SO4 A 1 203 3 SO4 SO4 . 
F 4 CU A 1 204 1 CU CU . 
G 2 TRT B 1 201 2 TRT TRT . 
H 3 SO4 B 1 202 4 SO4 SO4 . 
I 4 CU B 1 203 2 CU CU . 
J 5 HOH A 1 301 23 HOH HOH . 
J 5 HOH A 2 302 17 HOH HOH . 
J 5 HOH A 3 303 25 HOH HOH . 
J 5 HOH A 4 304 18 HOH HOH . 
J 5 HOH A 5 305 29 HOH HOH . 
J 5 HOH A 6 306 2 HOH HOH . 
J 5 HOH A 7 307 9 HOH HOH . 
J 5 HOH A 8 308 16 HOH HOH . 
J 5 HOH A 9 309 15 HOH HOH . 
J 5 HOH A 10 310 8 HOH HOH . 
J 5 HOH A 11 311 26 HOH HOH . 
J 5 HOH A 12 312 28 HOH HOH . 
K 5 HOH B 1 301 19 HOH HOH . 
K 5 HOH B 2 302 12 HOH HOH . 
K 5 HOH B 3 303 13 HOH HOH . 
K 5 HOH B 4 304 20 HOH HOH . 
K 5 HOH B 5 305 5 HOH HOH . 
K 5 HOH B 6 306 22 HOH HOH . 
K 5 HOH B 7 307 21 HOH HOH . 
K 5 HOH B 8 308 27 HOH HOH . 
K 5 HOH B 9 309 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 TRT . . . D 2 7.328 -1.65 -9.687 1 50.89 ? C25 TRT 202 A 1 
HETATM 2 O O24 TRT . . . D 2 8.697 -1.416 -9.475 1 62.23 ? O24 TRT 202 A 1 
HETATM 3 C C23 TRT . . . D 2 9.227 -2.113 -8.361 1 56.66 ? C23 TRT 202 A 1 
HETATM 4 C C22 TRT . . . D 2 9.773 -3.483 -8.834 1 65.97 ? C22 TRT 202 A 1 
HETATM 5 O O21 TRT . . . D 2 9.746 -4.427 -7.77 1 64.25 ? O21 TRT 202 A 1 
HETATM 6 C C20 TRT . . . D 2 8.449 -4.818 -7.368 1 61.94 ? C20 TRT 202 A 1 
HETATM 7 C C19 TRT . . . D 2 8.424 -6.336 -7.066 1 52.1 ? C19 TRT 202 A 1 
HETATM 8 O O18 TRT . . . D 2 7.419 -6.599 -6.127 1 62.14 ? O18 TRT 202 A 1 
HETATM 9 C C17 TRT . . . D 2 6.143 -6.912 -6.652 1 53.29 ? C17 TRT 202 A 1 
HETATM 10 C C16 TRT . . . D 2 5.233 -5.679 -6.573 1 52.88 ? C16 TRT 202 A 1 
HETATM 11 O O15 TRT . . . D 2 4.649 -5.591 -5.291 1 52.83 ? O15 TRT 202 A 1 
HETATM 12 C C12 TRT . . . D 2 5.245 -4.608 -4.467 1 64.65 ? C12 TRT 202 A 1 
HETATM 13 C C13 TRT . . . D 2 4.829 -3.282 -4.538 1 63.02 ? C13 TRT 202 A 1 
HETATM 14 C C14 TRT . . . D 2 5.423 -2.324 -3.723 1 65.02 ? C14 TRT 202 A 1 
HETATM 15 C C11 TRT . . . D 2 6.248 -4.971 -3.584 1 68.73 ? C11 TRT 202 A 1 
HETATM 16 C C10 TRT . . . D 2 6.841 -4.011 -2.767 1 57.89 ? C10 TRT 202 A 1 
HETATM 17 C C9 TRT . . . D 2 6.435 -2.686 -2.84 1 57.84 ? C9 TRT 202 A 1 
HETATM 18 C C6 TRT . . . D 2 7.087 -1.584 -1.921 1 62.67 ? C6 TRT 202 A 1 
HETATM 19 C C8 TRT . . . D 2 7.985 -2.219 -0.844 1 46.99 ? C8 TRT 202 A 1 
HETATM 20 C C7 TRT . . . D 2 5.932 -0.88 -1.197 1 60.58 ? C7 TRT 202 A 1 
HETATM 21 C C5 TRT . . . D 2 7.849 -0.476 -2.767 1 53.55 ? C5 TRT 202 A 1 
HETATM 22 C C1 TRT . . . D 2 9.299 -0.866 -3.311 1 54.7 ? C1 TRT 202 A 1 
HETATM 23 C C2 TRT . . . D 2 10.341 -0.829 -2.204 1 67.82 ? C2 TRT 202 A 1 
HETATM 24 C C4 TRT . . . D 2 9.692 0.193 -4.353 1 71.85 ? C4 TRT 202 A 1 
HETATM 25 C C3 TRT . . . D 2 9.319 -2.252 -4.007 1 56.6 ? C3 TRT 202 A 1 
HETATM 26 H H251 TRT . . . D 2 7.077 -1.33 -10.567 1 61.26 ? H251 TRT 202 A 1 
HETATM 27 H H252 TRT . . . D 2 7.149 -2.602 -9.626 1 61.26 ? H252 TRT 202 A 1 
HETATM 28 H H253 TRT . . . D 2 6.811 -1.181 -9.013 1 61.26 ? H253 TRT 202 A 1 
HETATM 29 H H231 TRT . . . D 2 9.946 -1.595 -7.966 1 68.19 ? H231 TRT 202 A 1 
HETATM 30 H H232 TRT . . . D 2 8.529 -2.251 -7.702 1 68.19 ? H232 TRT 202 A 1 
HETATM 31 H H221 TRT . . . D 2 9.225 -3.81 -9.564 1 79.36 ? H221 TRT 202 A 1 
HETATM 32 H H222 TRT . . . D 2 10.687 -3.374 -9.14 1 79.36 ? H222 TRT 202 A 1 
HETATM 33 H H201 TRT . . . D 2 7.819 -4.621 -8.079 1 74.52 ? H201 TRT 202 A 1 
HETATM 34 H H202 TRT . . . D 2 8.198 -4.327 -6.57 1 74.52 ? H202 TRT 202 A 1 
HETATM 35 H H191 TRT . . . D 2 9.282 -6.611 -6.707 1 62.71 ? H191 TRT 202 A 1 
HETATM 36 H H192 TRT . . . D 2 8.242 -6.827 -7.882 1 62.71 ? H192 TRT 202 A 1 
HETATM 37 H H171 TRT . . . D 2 5.751 -7.635 -6.137 1 64.14 ? H171 TRT 202 A 1 
HETATM 38 H H172 TRT . . . D 2 6.234 -7.187 -7.578 1 64.14 ? H172 TRT 202 A 1 
HETATM 39 H H161 TRT . . . D 2 4.533 -5.753 -7.24 1 63.64 ? H161 TRT 202 A 1 
HETATM 40 H H162 TRT . . . D 2 5.758 -4.881 -6.742 1 63.64 ? H162 TRT 202 A 1 
HETATM 41 H H13 TRT . . . D 2 4.155 -3.037 -5.13 1 75.81 ? H13 TRT 202 A 1 
HETATM 42 H H14 TRT . . . D 2 5.142 -1.439 -3.769 1 78.21 ? H14 TRT 202 A 1 
HETATM 43 H H11 TRT . . . D 2 6.526 -5.857 -3.537 1 82.67 ? H11 TRT 202 A 1 
HETATM 44 H H10 TRT . . . D 2 7.511 -4.26 -2.171 1 69.67 ? H10 TRT 202 A 1 
HETATM 45 H H8C1 TRT . . . D 2 8.662 -2.768 -1.271 1 56.58 ? H8C1 TRT 202 A 1 
HETATM 46 H H8C2 TRT . . . D 2 7.445 -2.769 -0.256 1 56.58 ? H8C2 TRT 202 A 1 
HETATM 47 H H8C3 TRT . . . D 2 8.415 -1.518 -0.329 1 56.58 ? H8C3 TRT 202 A 1 
HETATM 48 H H7C1 TRT . . . D 2 5.61 -0.144 -1.742 1 72.88 ? H7C1 TRT 202 A 1 
HETATM 49 H H7C2 TRT . . . D 2 5.211 -1.511 -1.048 1 72.88 ? H7C2 TRT 202 A 1 
HETATM 50 H H7C3 TRT . . . D 2 6.245 -0.538 -0.345 1 72.88 ? H7C3 TRT 202 A 1 
HETATM 51 H H5C1 TRT . . . D 2 7.947 0.308 -2.204 1 64.45 ? H5C1 TRT 202 A 1 
HETATM 52 H H5C2 TRT . . . D 2 7.296 -0.257 -3.533 1 64.45 ? H5C2 TRT 202 A 1 
HETATM 53 H H2C1 TRT . . . D 2 10.509 -1.73 -1.888 1 81.58 ? H2C1 TRT 202 A 1 
HETATM 54 H H2C2 TRT . . . D 2 11.164 -0.448 -2.548 1 81.58 ? H2C2 TRT 202 A 1 
HETATM 55 H H2C3 TRT . . . D 2 10.014 -0.284 -1.471 1 81.58 ? H2C3 TRT 202 A 1 
HETATM 56 H H4C1 TRT . . . D 2 10.588 0.011 -4.676 1 86.41 ? H4C1 TRT 202 A 1 
HETATM 57 H H4C2 TRT . . . D 2 9.667 1.072 -3.945 1 86.41 ? H4C2 TRT 202 A 1 
HETATM 58 H H4C3 TRT . . . D 2 9.068 0.162 -5.095 1 86.41 ? H4C3 TRT 202 A 1 
HETATM 59 H H3C1 TRT . . . D 2 8.577 -2.312 -4.629 1 68.11 ? H3C1 TRT 202 A 1 
HETATM 60 H H3C2 TRT . . . D 2 10.154 -2.36 -4.488 1 68.11 ? H3C2 TRT 202 A 1 
HETATM 61 H H3C3 TRT . . . D 2 9.238 -2.95 -3.338 1 68.11 ? H3C3 TRT 202 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           61 
#