data_8AF2 # _model_server_result.job_id 4kISpiWc1dbSpVvF6SSEwg _model_server_result.datetime_utc '2024-11-19 16:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8af2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 8AF2 # _exptl.entry_id 8AF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.732 _cell.angle_gamma 90 _cell.entry_id 8AF2 _cell.length_a 34.512 _cell.length_b 50.523 _cell.length_c 62.211 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 110 A LEU 110 1_555 A N BP5 111 A BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C BP5 111 A BP5 111 1_555 A N MET 112 A MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LEU 110 B LEU 110 1_555 B N BP5 111 B BP5 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C BP5 111 B BP5 111 1_555 B N MET 112 B MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A N1 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A N2 BP5 111 A BP5 111 1_555 F CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 F CU CU . A CU 204 1_555 J O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc4 F CU CU . A CU 204 1_555 J O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 F CU CU . A CU 204 1_555 J O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 F CU CU . A CU 204 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 B N1 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 B N2 BP5 111 B BP5 111 1_555 I CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc9 I CU CU . B CU 203 1_555 K O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc10 I CU CU . B CU 203 1_555 K O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc11 I CU CU . B CU 203 1_555 K O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc12 I CU CU . B CU 203 1_555 K O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8AF2 _atom_sites.fract_transf_matrix[1][1] 0.028975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRT A 1 201 1 TRT TRT . D 2 TRT A 1 202 3 TRT TRT . E 3 SO4 A 1 203 3 SO4 SO4 . F 4 CU A 1 204 1 CU CU . G 2 TRT B 1 201 2 TRT TRT . H 3 SO4 B 1 202 4 SO4 SO4 . I 4 CU B 1 203 2 CU CU . J 5 HOH A 1 301 23 HOH HOH . J 5 HOH A 2 302 17 HOH HOH . J 5 HOH A 3 303 25 HOH HOH . J 5 HOH A 4 304 18 HOH HOH . J 5 HOH A 5 305 29 HOH HOH . J 5 HOH A 6 306 2 HOH HOH . J 5 HOH A 7 307 9 HOH HOH . J 5 HOH A 8 308 16 HOH HOH . J 5 HOH A 9 309 15 HOH HOH . J 5 HOH A 10 310 8 HOH HOH . J 5 HOH A 11 311 26 HOH HOH . J 5 HOH A 12 312 28 HOH HOH . K 5 HOH B 1 301 19 HOH HOH . K 5 HOH B 2 302 12 HOH HOH . K 5 HOH B 3 303 13 HOH HOH . K 5 HOH B 4 304 20 HOH HOH . K 5 HOH B 5 305 5 HOH HOH . K 5 HOH B 6 306 22 HOH HOH . K 5 HOH B 7 307 21 HOH HOH . K 5 HOH B 8 308 27 HOH HOH . K 5 HOH B 9 309 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.549 _atom_site.Cartn_y 9.793 _atom_site.Cartn_z -7.573 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #