data_8AF3 # _model_server_result.job_id NmZ7USJSUgRDY-mGFgi2Jw _model_server_result.datetime_utc '2024-11-13 19:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8af3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8AF3 # _exptl.entry_id 8AF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRAGMENT OF TRITON X-100' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AF3 _cell.length_a 35.16 _cell.length_b 51.05 _cell.length_c 63.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 110 A LEU 110 1_555 A N Q8X 111 A Q8X 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C Q8X 111 A Q8X 111 1_555 A N MET 112 A MET 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A N2 Q8X 111 A Q8X 111 1_555 E CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 A N3 Q8X 111 A Q8X 111 1_555 E CU CU . A CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 E CU CU . A CU 204 1_555 F O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C21 H36 O4' _chem_comp.formula_weight 352.508 _chem_comp.id TRT _chem_comp.mon_nstd_flag . _chem_comp.name 'FRAGMENT OF TRITON X-100' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O24 TRT sing 361 n n C25 H251 TRT sing 362 n n C25 H252 TRT sing 363 n n C25 H253 TRT sing 364 n n O24 C23 TRT sing 365 n n C23 C22 TRT sing 366 n n C23 H231 TRT sing 367 n n C23 H232 TRT sing 368 n n C22 O21 TRT sing 369 n n C22 H221 TRT sing 370 n n C22 H222 TRT sing 371 n n O21 C20 TRT sing 372 n n C20 C19 TRT sing 373 n n C20 H201 TRT sing 374 n n C20 H202 TRT sing 375 n n C19 O18 TRT sing 376 n n C19 H191 TRT sing 377 n n C19 H192 TRT sing 378 n n O18 C17 TRT sing 379 n n C17 C16 TRT sing 380 n n C17 H171 TRT sing 381 n n C17 H172 TRT sing 382 n n C16 O15 TRT sing 383 n n C16 H161 TRT sing 384 n n C16 H162 TRT sing 385 n n O15 C12 TRT sing 386 n n C12 C13 TRT doub 387 n y C12 C11 TRT sing 388 n y C13 C14 TRT sing 389 n y C13 H13 TRT sing 390 n n C14 C9 TRT doub 391 n y C14 H14 TRT sing 392 n n C11 C10 TRT doub 393 n y C11 H11 TRT sing 394 n n C10 C9 TRT sing 395 n y C10 H10 TRT sing 396 n n C9 C6 TRT sing 397 n n C6 C8 TRT sing 398 n n C6 C7 TRT sing 399 n n C6 C5 TRT sing 400 n n C8 H8C1 TRT sing 401 n n C8 H8C2 TRT sing 402 n n C8 H8C3 TRT sing 403 n n C7 H7C1 TRT sing 404 n n C7 H7C2 TRT sing 405 n n C7 H7C3 TRT sing 406 n n C5 C1 TRT sing 407 n n C5 H5C1 TRT sing 408 n n C5 H5C2 TRT sing 409 n n C1 C2 TRT sing 410 n n C1 C4 TRT sing 411 n n C1 C3 TRT sing 412 n n C2 H2C1 TRT sing 413 n n C2 H2C2 TRT sing 414 n n C2 H2C3 TRT sing 415 n n C4 H4C1 TRT sing 416 n n C4 H4C2 TRT sing 417 n n C4 H4C3 TRT sing 418 n n C3 H3C1 TRT sing 419 n n C3 H3C2 TRT sing 420 n n C3 H3C3 TRT sing 421 n n # _atom_sites.entry_id 8AF3 _atom_sites.fract_transf_matrix[1][1] 0.028441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRT A 1 201 201 TRT TRT . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 CU A 1 204 1 CU CU . F 5 HOH A 1 301 46 HOH HOH . F 5 HOH A 2 302 1 HOH HOH . F 5 HOH A 3 303 13 HOH HOH . F 5 HOH A 4 304 9 HOH HOH . F 5 HOH A 5 305 48 HOH HOH . F 5 HOH A 6 306 14 HOH HOH . F 5 HOH A 7 307 18 HOH HOH . F 5 HOH A 8 308 5 HOH HOH . F 5 HOH A 9 309 3 HOH HOH . F 5 HOH A 10 310 2 HOH HOH . F 5 HOH A 11 311 17 HOH HOH . F 5 HOH A 12 312 12 HOH HOH . F 5 HOH A 13 313 44 HOH HOH . F 5 HOH A 14 314 52 HOH HOH . F 5 HOH A 15 315 27 HOH HOH . F 5 HOH A 16 316 42 HOH HOH . F 5 HOH A 17 317 4 HOH HOH . F 5 HOH A 18 318 28 HOH HOH . F 5 HOH A 19 319 29 HOH HOH . F 5 HOH A 20 320 31 HOH HOH . F 5 HOH A 21 321 43 HOH HOH . F 5 HOH A 22 322 8 HOH HOH . F 5 HOH A 23 323 32 HOH HOH . F 5 HOH A 24 324 20 HOH HOH . F 5 HOH A 25 325 30 HOH HOH . F 5 HOH A 26 326 10 HOH HOH . F 5 HOH A 27 327 26 HOH HOH . F 5 HOH A 28 328 37 HOH HOH . F 5 HOH A 29 329 16 HOH HOH . F 5 HOH A 30 330 19 HOH HOH . F 5 HOH A 31 331 21 HOH HOH . F 5 HOH A 32 332 6 HOH HOH . F 5 HOH A 33 333 11 HOH HOH . F 5 HOH A 34 334 50 HOH HOH . F 5 HOH A 35 335 24 HOH HOH . F 5 HOH A 36 336 23 HOH HOH . F 5 HOH A 37 337 33 HOH HOH . F 5 HOH A 38 338 7 HOH HOH . F 5 HOH A 39 339 39 HOH HOH . F 5 HOH A 40 340 49 HOH HOH . F 5 HOH A 41 341 25 HOH HOH . F 5 HOH A 42 342 22 HOH HOH . F 5 HOH A 43 343 15 HOH HOH . F 5 HOH A 44 344 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TRT . . . B 2 29.022 45.002 16.633 1 92.78 ? C25 TRT 201 A 1 HETATM 2 O O24 TRT . . . B 2 30.181 44.214 16.557 1 92.53 ? O24 TRT 201 A 1 HETATM 3 C C23 TRT . . . B 2 31.366 44.962 16.746 1 87.04 ? C23 TRT 201 A 1 HETATM 4 C C22 TRT . . . B 2 32.526 44.347 15.933 1 75.46 ? C22 TRT 201 A 1 HETATM 5 O O21 TRT . . . B 2 32.781 43.027 16.372 1 72.18 ? O21 TRT 201 A 1 HETATM 6 C C20 TRT . . . B 2 32.722 42.105 15.308 1 69.48 ? C20 TRT 201 A 1 HETATM 7 C C19 TRT . . . B 2 32.802 40.668 15.864 1 68.15 ? C19 TRT 201 A 1 HETATM 8 O O18 TRT . . . B 2 32.756 39.771 14.802 1 68.06 ? O18 TRT 201 A 1 HETATM 9 C C17 TRT . . . B 2 32.979 38.452 15.219 1 67.72 ? C17 TRT 201 A 1 HETATM 10 C C16 TRT . . . B 2 31.622 37.774 15.368 1 70.75 ? C16 TRT 201 A 1 HETATM 11 O O15 TRT . . . B 2 31.272 37.185 14.145 1 71.38 ? O15 TRT 201 A 1 HETATM 12 C C12 TRT . . . B 2 31.109 35.791 14.262 1 67.6 ? C12 TRT 201 A 1 HETATM 13 C C13 TRT . . . B 2 32.085 34.94 13.779 1 65.25 ? C13 TRT 201 A 1 HETATM 14 C C14 TRT . . . B 2 31.94 33.569 13.891 1 63.85 ? C14 TRT 201 A 1 HETATM 15 C C11 TRT . . . B 2 29.987 35.278 14.868 1 75.03 ? C11 TRT 201 A 1 HETATM 16 C C10 TRT . . . B 2 29.833 33.902 14.983 1 73.77 ? C10 TRT 201 A 1 HETATM 17 C C9 TRT . . . B 2 30.807 33.046 14.496 1 69.68 ? C9 TRT 201 A 1 HETATM 18 C C6 TRT . . . B 2 30.591 31.499 14.65 1 69.54 ? C6 TRT 201 A 1 HETATM 19 C C8 TRT . . . B 2 31.604 30.745 13.779 1 62.28 ? C8 TRT 201 A 1 HETATM 20 C C7 TRT . . . B 2 30.81 31.15 16.123 1 76.51 ? C7 TRT 201 A 1 HETATM 21 C C5 TRT . . . B 2 29.098 31.195 14.228 1 67.23 ? C5 TRT 201 A 1 HETATM 22 C C1 TRT . . . B 2 28.745 29.684 13.875 1 70.69 ? C1 TRT 201 A 1 HETATM 23 C C2 TRT . . . B 2 29.233 28.718 14.936 1 77.29 ? C2 TRT 201 A 1 HETATM 24 C C4 TRT . . . B 2 27.219 29.59 13.789 1 67.69 ? C4 TRT 201 A 1 HETATM 25 C C3 TRT . . . B 2 29.297 29.256 12.491 1 63.32 ? C3 TRT 201 A 1 HETATM 26 H H251 TRT . . . B 2 29.027 45.649 15.91 1 111.41 ? H251 TRT 201 A 1 HETATM 27 H H252 TRT . . . B 2 28.239 44.434 16.557 1 111.41 ? H252 TRT 201 A 1 HETATM 28 H H253 TRT . . . B 2 29.006 45.467 17.483 1 111.41 ? H253 TRT 201 A 1 HETATM 29 H H231 TRT . . . B 2 31.217 45.874 16.453 1 104.53 ? H231 TRT 201 A 1 HETATM 30 H H232 TRT . . . B 2 31.598 44.958 17.687 1 104.53 ? H232 TRT 201 A 1 HETATM 31 H H221 TRT . . . B 2 32.284 44.331 14.995 1 90.63 ? H221 TRT 201 A 1 HETATM 32 H H222 TRT . . . B 2 33.324 44.885 16.049 1 90.63 ? H222 TRT 201 A 1 HETATM 33 H H201 TRT . . . B 2 31.888 42.219 14.827 1 83.46 ? H201 TRT 201 A 1 HETATM 34 H H202 TRT . . . B 2 33.467 42.259 14.705 1 83.46 ? H202 TRT 201 A 1 HETATM 35 H H191 TRT . . . B 2 33.638 40.558 16.342 1 81.86 ? H191 TRT 201 A 1 HETATM 36 H H192 TRT . . . B 2 32.057 40.504 16.465 1 81.86 ? H192 TRT 201 A 1 HETATM 37 H H171 TRT . . . B 2 33.512 37.98 14.56 1 81.34 ? H171 TRT 201 A 1 HETATM 38 H H172 TRT . . . B 2 33.442 38.45 16.073 1 81.34 ? H172 TRT 201 A 1 HETATM 39 H H161 TRT . . . B 2 31.681 37.091 16.056 1 84.97 ? H161 TRT 201 A 1 HETATM 40 H H162 TRT . . . B 2 30.955 38.432 15.613 1 84.97 ? H162 TRT 201 A 1 HETATM 41 H H13 TRT . . . B 2 32.841 35.289 13.372 1 78.37 ? H13 TRT 201 A 1 HETATM 42 H H14 TRT . . . B 2 32.605 33.015 13.557 1 76.7 ? H14 TRT 201 A 1 HETATM 43 H H11 TRT . . . B 2 29.331 35.85 15.196 1 90.11 ? H11 TRT 201 A 1 HETATM 44 H H10 TRT . . . B 2 29.072 33.558 15.393 1 88.6 ? H10 TRT 201 A 1 HETATM 45 H H8C1 TRT . . . B 2 31.418 30.92 12.843 1 74.82 ? H8C1 TRT 201 A 1 HETATM 46 H H8C2 TRT . . . B 2 31.537 29.795 13.95 1 74.82 ? H8C2 TRT 201 A 1 HETATM 47 H H8C3 TRT . . . B 2 32.503 31.032 13.997 1 74.82 ? H8C3 TRT 201 A 1 HETATM 48 H H7C1 TRT . . . B 2 29.997 30.772 16.49 1 91.88 ? H7C1 TRT 201 A 1 HETATM 49 H H7C2 TRT . . . B 2 31.046 31.954 16.613 1 91.88 ? H7C2 TRT 201 A 1 HETATM 50 H H7C3 TRT . . . B 2 31.53 30.504 16.193 1 91.88 ? H7C3 TRT 201 A 1 HETATM 51 H H5C1 TRT . . . B 2 28.523 31.466 14.959 1 80.75 ? H5C1 TRT 201 A 1 HETATM 52 H H5C2 TRT . . . B 2 28.882 31.74 13.458 1 80.75 ? H5C2 TRT 201 A 1 HETATM 53 H H2C1 TRT . . . B 2 29.149 27.813 14.598 1 92.83 ? H2C1 TRT 201 A 1 HETATM 54 H H2C2 TRT . . . B 2 28.698 28.82 15.738 1 92.83 ? H2C2 TRT 201 A 1 HETATM 55 H H2C3 TRT . . . B 2 30.162 28.888 15.144 1 92.83 ? H2C3 TRT 201 A 1 HETATM 56 H H4C1 TRT . . . B 2 26.867 29.259 14.629 1 81.3 ? H4C1 TRT 201 A 1 HETATM 57 H H4C2 TRT . . . B 2 26.974 28.981 13.074 1 81.3 ? H4C2 TRT 201 A 1 HETATM 58 H H4C3 TRT . . . B 2 26.853 30.469 13.603 1 81.3 ? H4C3 TRT 201 A 1 HETATM 59 H H3C1 TRT . . . B 2 30.25 29.101 12.54 1 76.06 ? H3C1 TRT 201 A 1 HETATM 60 H H3C2 TRT . . . B 2 28.859 28.439 12.207 1 76.06 ? H3C2 TRT 201 A 1 HETATM 61 H H3C3 TRT . . . B 2 29.12 29.958 11.846 1 76.06 ? H3C3 TRT 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 61 #