data_8AFC # _model_server_result.job_id ULpMCsdVYH-7kjJ2-rpf2Q _model_server_result.datetime_utc '2024-11-27 22:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8afc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8AFC # _exptl.entry_id 8AFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.307 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-4,4-dimethyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AFC _cell.length_a 136.04 _cell.length_b 136.04 _cell.length_c 91.26 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 12 1_555 B SG CYS 12 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 C O1B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 D MG MG . A MG 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 D MG MG . A MG 202 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 D MG MG . A MG 202 1_555 H O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc6 D MG MG . A MG 202 1_555 H O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C11 H14 N2 S' _chem_comp.formula_weight 206.307 _chem_comp.id LXK _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-4,4-dimethyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C4 LXK sing 239 n n C14 C8 LXK sing 240 n n C14 C9 LXK sing 241 n n N12 C5 LXK sing 242 n n C5 S7 LXK sing 243 n y C5 C2 LXK doub 244 n y S7 C3 LXK sing 245 n y N13 C6 LXK trip 246 n n C6 C2 LXK sing 247 n n C2 C1 LXK sing 248 n y C3 C1 LXK doub 249 n y C3 C8 LXK sing 250 n n C1 C4 LXK sing 251 n n C4 C9 LXK sing 252 n n C4 C11 LXK sing 253 n n C8 H1 LXK sing 254 n n C8 H2 LXK sing 255 n n C10 H3 LXK sing 256 n n C10 H4 LXK sing 257 n n C10 H5 LXK sing 258 n n N12 H6 LXK sing 259 n n N12 H7 LXK sing 260 n n C9 H8 LXK sing 261 n n C9 H9 LXK sing 262 n n C11 H10 LXK sing 263 n n C11 H11 LXK sing 264 n n C11 H12 LXK sing 265 n n C14 H13 LXK sing 266 n n C14 H14 LXK sing 267 n n # _atom_sites.entry_id 8AFC _atom_sites.fract_transf_matrix[1][1] 0.007351 _atom_sites.fract_transf_matrix[1][2] 0.004244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 MG A 1 202 202 MG MG . E 4 LXK A 1 203 1 LXK LIG . F 5 SO4 A 1 204 1 SO4 SO4 . G 2 GDP B 1 201 201 GDP GDP . H 6 HOH A 1 301 19 HOH HOH . H 6 HOH A 2 302 1 HOH HOH . H 6 HOH A 3 303 24 HOH HOH . H 6 HOH A 4 304 13 HOH HOH . H 6 HOH A 5 305 16 HOH HOH . H 6 HOH A 6 306 22 HOH HOH . H 6 HOH A 7 307 6 HOH HOH . H 6 HOH A 8 308 37 HOH HOH . H 6 HOH A 9 309 15 HOH HOH . H 6 HOH A 10 310 12 HOH HOH . H 6 HOH A 11 311 14 HOH HOH . H 6 HOH A 12 312 39 HOH HOH . H 6 HOH A 13 313 10 HOH HOH . H 6 HOH A 14 314 20 HOH HOH . H 6 HOH A 15 315 34 HOH HOH . H 6 HOH A 16 316 5 HOH HOH . H 6 HOH A 17 317 36 HOH HOH . H 6 HOH A 18 318 18 HOH HOH . H 6 HOH A 19 319 23 HOH HOH . H 6 HOH A 20 320 7 HOH HOH . H 6 HOH A 21 321 38 HOH HOH . H 6 HOH A 22 322 26 HOH HOH . H 6 HOH A 23 323 31 HOH HOH . H 6 HOH A 24 324 35 HOH HOH . H 6 HOH A 25 325 43 HOH HOH . H 6 HOH A 26 326 17 HOH HOH . I 6 HOH B 1 301 41 HOH HOH . I 6 HOH B 2 302 33 HOH HOH . I 6 HOH B 3 303 30 HOH HOH . I 6 HOH B 4 304 29 HOH HOH . I 6 HOH B 5 305 40 HOH HOH . I 6 HOH B 6 306 3 HOH HOH . I 6 HOH B 7 307 8 HOH HOH . I 6 HOH B 8 308 21 HOH HOH . I 6 HOH B 9 309 9 HOH HOH . I 6 HOH B 10 310 2 HOH HOH . I 6 HOH B 11 311 11 HOH HOH . I 6 HOH B 12 312 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LXK . . . E 4 -28.864 52.146 -12.975 1 54.43 ? C4 LXK 203 A 1 HETATM 2 C C5 LXK . . . E 4 -32.561 53.16 -13.417 1 58.98 ? C5 LXK 203 A 1 HETATM 3 C C6 LXK . . . E 4 -30.758 54.783 -13.298 1 58.01 ? C6 LXK 203 A 1 HETATM 4 C C8 LXK . . . E 4 -30.68 49.702 -13.124 1 53.12 ? C8 LXK 203 A 1 HETATM 5 C C10 LXK . . . E 4 -28.138 52.807 -14.156 1 52.35 ? C10 LXK 203 A 1 HETATM 6 N N12 LXK . . . E 4 -33.577 54.03 -13.555 1 58.58 ? N12 LXK 203 A 1 HETATM 7 C C1 LXK . . . E 4 -30.409 52.235 -13.149 1 55.49 ? C1 LXK 203 A 1 HETATM 8 C C2 LXK . . . E 4 -31.201 53.423 -13.268 1 58.23 ? C2 LXK 203 A 1 HETATM 9 C C3 LXK . . . E 4 -31.18 51.116 -13.157 1 55.63 ? C3 LXK 203 A 1 HETATM 10 S S7 LXK . . . E 4 -32.87 51.46 -13.386 1 57.1 ? S7 LXK 203 A 1 HETATM 11 C C9 LXK . . . E 4 -28.371 50.685 -12.884 1 52.02 ? C9 LXK 203 A 1 HETATM 12 C C11 LXK . . . E 4 -28.415 52.843 -11.68 1 52.89 ? C11 LXK 203 A 1 HETATM 13 N N13 LXK . . . E 4 -30.464 55.887 -13.331 1 56.66 ? N13 LXK 203 A 1 HETATM 14 C C14 LXK . . . E 4 -29.232 49.653 -13.616 1 54.21 ? C14 LXK 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #