data_8AFR # _model_server_result.job_id '_j7I8SMOYcCv14Hdpfv-gA' _model_server_result.datetime_utc '2024-11-16 03:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8afr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8AFR # _exptl.entry_id 8AFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.264 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-((6-hydroxybenzofuran-3-yl)methyl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AFR _cell.length_a 96.437 _cell.length_b 96.437 _cell.length_c 80.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 259 A SER 260 1_555 A N SEP 260 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 260 A SEP 261 1_555 A N GLU 261 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C16 H12 O4' _chem_comp.formula_weight 268.264 _chem_comp.id M0F _chem_comp.mon_nstd_flag . _chem_comp.name '4-((6-hydroxybenzofuran-3-yl)methyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C10 M0F doub 218 n n C11 C12 M0F doub 219 n y C11 C9 M0F sing 220 n y C10 C9 M0F sing 221 n n C10 O1 M0F sing 222 n n C12 C6 M0F sing 223 n y C9 C8 M0F doub 224 n y C6 C5 M0F sing 225 n n C6 C7 M0F doub 226 n y C8 C7 M0F sing 227 n y C5 C4 M0F sing 228 n n C4 C13 M0F doub 229 n y C4 C3 M0F sing 230 n y C13 O3 M0F sing 231 n y C3 C2 M0F doub 232 n y C3 C14 M0F sing 233 n y O3 C14 M0F sing 234 n y C2 C1 M0F sing 235 n y C14 C15 M0F doub 236 n y C1 C M0F doub 237 n y C15 C M0F sing 238 n y C O M0F sing 239 n n C5 H1 M0F sing 240 n n C5 H2 M0F sing 241 n n C2 H3 M0F sing 242 n n O H4 M0F sing 243 n n C1 H5 M0F sing 244 n n C11 H6 M0F sing 245 n n C12 H7 M0F sing 246 n n C13 H8 M0F sing 247 n n C15 H9 M0F sing 248 n n C7 H10 M0F sing 249 n n C8 H11 M0F sing 250 n n O1 H12 M0F sing 251 n n # _atom_sites.entry_id 8AFR _atom_sites.fract_transf_matrix[1][1] 0.010369 _atom_sites.fract_transf_matrix[1][2] 0.005987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 M0F A 1 401 1 M0F LHC . D 4 HOH A 1 501 134 HOH HOH . D 4 HOH A 2 502 193 HOH HOH . D 4 HOH A 3 503 65 HOH HOH . D 4 HOH A 4 504 105 HOH HOH . D 4 HOH A 5 505 191 HOH HOH . D 4 HOH A 6 506 53 HOH HOH . D 4 HOH A 7 507 100 HOH HOH . D 4 HOH A 8 508 82 HOH HOH . D 4 HOH A 9 509 87 HOH HOH . D 4 HOH A 10 510 141 HOH HOH . D 4 HOH A 11 511 101 HOH HOH . D 4 HOH A 12 512 185 HOH HOH . D 4 HOH A 13 513 183 HOH HOH . D 4 HOH A 14 514 194 HOH HOH . D 4 HOH A 15 515 33 HOH HOH . D 4 HOH A 16 516 31 HOH HOH . D 4 HOH A 17 517 175 HOH HOH . D 4 HOH A 18 518 67 HOH HOH . D 4 HOH A 19 519 139 HOH HOH . D 4 HOH A 20 520 55 HOH HOH . D 4 HOH A 21 521 174 HOH HOH . D 4 HOH A 22 522 60 HOH HOH . D 4 HOH A 23 523 143 HOH HOH . D 4 HOH A 24 524 35 HOH HOH . D 4 HOH A 25 525 147 HOH HOH . D 4 HOH A 26 526 160 HOH HOH . D 4 HOH A 27 527 138 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 43 HOH HOH . D 4 HOH A 30 530 172 HOH HOH . D 4 HOH A 31 531 161 HOH HOH . D 4 HOH A 32 532 50 HOH HOH . D 4 HOH A 33 533 36 HOH HOH . D 4 HOH A 34 534 30 HOH HOH . D 4 HOH A 35 535 146 HOH HOH . D 4 HOH A 36 536 99 HOH HOH . D 4 HOH A 37 537 47 HOH HOH . D 4 HOH A 38 538 157 HOH HOH . D 4 HOH A 39 539 169 HOH HOH . D 4 HOH A 40 540 63 HOH HOH . D 4 HOH A 41 541 49 HOH HOH . D 4 HOH A 42 542 78 HOH HOH . D 4 HOH A 43 543 107 HOH HOH . D 4 HOH A 44 544 104 HOH HOH . D 4 HOH A 45 545 44 HOH HOH . D 4 HOH A 46 546 91 HOH HOH . D 4 HOH A 47 547 84 HOH HOH . D 4 HOH A 48 548 130 HOH HOH . D 4 HOH A 49 549 156 HOH HOH . D 4 HOH A 50 550 170 HOH HOH . D 4 HOH A 51 551 56 HOH HOH . D 4 HOH A 52 552 118 HOH HOH . D 4 HOH A 53 553 95 HOH HOH . D 4 HOH A 54 554 131 HOH HOH . D 4 HOH A 55 555 61 HOH HOH . D 4 HOH A 56 556 48 HOH HOH . D 4 HOH A 57 557 145 HOH HOH . D 4 HOH A 58 558 177 HOH HOH . D 4 HOH A 59 559 188 HOH HOH . D 4 HOH A 60 560 144 HOH HOH . D 4 HOH A 61 561 180 HOH HOH . D 4 HOH A 62 562 89 HOH HOH . D 4 HOH A 63 563 42 HOH HOH . D 4 HOH A 64 564 71 HOH HOH . D 4 HOH A 65 565 97 HOH HOH . D 4 HOH A 66 566 75 HOH HOH . D 4 HOH A 67 567 38 HOH HOH . D 4 HOH A 68 568 140 HOH HOH . D 4 HOH A 69 569 45 HOH HOH . D 4 HOH A 70 570 153 HOH HOH . D 4 HOH A 71 571 173 HOH HOH . D 4 HOH A 72 572 155 HOH HOH . D 4 HOH A 73 573 54 HOH HOH . D 4 HOH A 74 574 66 HOH HOH . D 4 HOH A 75 575 98 HOH HOH . D 4 HOH A 76 576 123 HOH HOH . D 4 HOH A 77 577 137 HOH HOH . D 4 HOH A 78 578 111 HOH HOH . D 4 HOH A 79 579 176 HOH HOH . D 4 HOH A 80 580 90 HOH HOH . D 4 HOH A 81 581 184 HOH HOH . D 4 HOH A 82 582 51 HOH HOH . D 4 HOH A 83 583 178 HOH HOH . D 4 HOH A 84 584 195 HOH HOH . D 4 HOH A 85 585 167 HOH HOH . D 4 HOH A 86 586 70 HOH HOH . D 4 HOH A 87 587 52 HOH HOH . D 4 HOH A 88 588 142 HOH HOH . D 4 HOH A 89 589 182 HOH HOH . D 4 HOH A 90 590 81 HOH HOH . D 4 HOH A 91 591 83 HOH HOH . D 4 HOH A 92 592 190 HOH HOH . D 4 HOH A 93 593 132 HOH HOH . D 4 HOH A 94 594 28 HOH HOH . D 4 HOH A 95 595 151 HOH HOH . D 4 HOH A 96 596 133 HOH HOH . D 4 HOH A 97 597 168 HOH HOH . D 4 HOH A 98 598 149 HOH HOH . D 4 HOH A 99 599 162 HOH HOH . D 4 HOH A 100 600 154 HOH HOH . D 4 HOH A 101 601 192 HOH HOH . D 4 HOH A 102 602 148 HOH HOH . D 4 HOH A 103 603 152 HOH HOH . D 4 HOH A 104 604 186 HOH HOH . D 4 HOH A 105 605 150 HOH HOH . D 4 HOH A 106 606 85 HOH HOH . E 4 HOH C 1 101 96 HOH HOH . E 4 HOH C 2 102 136 HOH HOH . E 4 HOH C 3 103 62 HOH HOH . E 4 HOH C 4 104 166 HOH HOH . E 4 HOH C 5 105 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 M0F . . . C 3 116.538 203.851 -0.646 1 53.47 ? C6 M0F 401 A 1 HETATM 2 C C5 M0F . . . C 3 117.85 204.5 -0.261 1 61.17 ? C5 M0F 401 A 1 HETATM 3 C C4 M0F . . . C 3 117.964 205.29 1.017 1 61.18 ? C4 M0F 401 A 1 HETATM 4 C C2 M0F . . . C 3 116 204.61 2.615 1 62.81 ? C2 M0F 401 A 1 HETATM 5 O O2 M0F . . . C 3 112.807 201.88 -3.362 1 45.61 ? O2 M0F 401 A 1 HETATM 6 C C M0F . . . C 3 116.161 205.67 4.778 1 74.54 ? C M0F 401 A 1 HETATM 7 O O M0F . . . C 3 115.677 205.861 6.041 1 81.71 ? O M0F 401 A 1 HETATM 8 C C1 M0F . . . C 3 115.503 204.813 3.894 1 70.23 ? C1 M0F 401 A 1 HETATM 9 C C10 M0F . . . C 3 113.317 201.544 -2.3 1 47.2 ? C10 M0F 401 A 1 HETATM 10 C C11 M0F . . . C 3 114.816 203.531 -2.303 1 49.73 ? C11 M0F 401 A 1 HETATM 11 C C12 M0F . . . C 3 115.866 204.266 -1.785 1 52.61 ? C12 M0F 401 A 1 HETATM 12 C C13 M0F . . . C 3 118.961 206.145 1.285 1 67.47 ? C13 M0F 401 A 1 HETATM 13 C C14 M0F . . . C 3 117.778 206.111 3.114 1 69.03 ? C14 M0F 401 A 1 HETATM 14 C C15 M0F . . . C 3 117.316 206.335 4.388 1 68.43 ? C15 M0F 401 A 1 HETATM 15 C C3 M0F . . . C 3 117.16 205.263 2.211 1 59.29 ? C3 M0F 401 A 1 HETATM 16 C C7 M0F . . . C 3 116.086 202.709 0.002 1 51.47 ? C7 M0F 401 A 1 HETATM 17 C C8 M0F . . . C 3 115.029 201.972 -0.506 1 52.55 ? C8 M0F 401 A 1 HETATM 18 C C9 M0F . . . C 3 114.393 202.364 -1.68 1 45.94 ? C9 M0F 401 A 1 HETATM 19 O O1 M0F . . . C 3 112.977 200.465 -1.649 1 41.16 ? O1 M0F 401 A 1 HETATM 20 O O3 M0F . . . C 3 118.897 206.669 2.553 1 69.94 ? O3 M0F 401 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 20 #