data_8AGE
#
_model_server_result.job_id            qX6v_FG3NcSPnCFik2SX6A 
_model_server_result.datetime_utc      '2025-03-04 09:21:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8age 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":502}' 
#
_entry.id    8AGE 
#
_exptl.entry_id    8AGE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AGE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 Z N N 
? 16 AA N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
10 oligosaccharide 
11 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 10 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 10 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 10 5 4 MAN MAN C1 O1 . O2 HO2 . sing 
5 ? 10 6 5 MAN MAN C1 O1 . O2 HO2 . sing 
6 ? 10 7 3 MAN BMA C1 O1 . O6 HO6 . sing 
7 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
10 n J NAG 1 K 1 NAG A 801 NAG 
10 n J NAG 2 K 2 NAG A 802 NAG 
10 n J BMA 3 K 3 BMA A 803 BMA 
10 n J MAN 4 K 4 MAN A 804 MAN 
10 n J MAN 5 K 5 MAN A 805 MAN 
10 n J MAN 6 K 6 MAN A 806 MAN 
10 n J MAN 7 K 7 MAN A 807 MAN 
11 n K NAG 1 I 1 NAG E 501 NAG 
11 n K NAG 2 I 2 NAG E 502 NAG 
11 n L NAG 1 J 1 NAG E 504 NAG 
11 n L NAG 2 J 2 NAG E 505 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 539 A ASN 539 1_555 J C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 E ND2 ASN 336 E ASN 336 1_555 K C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 E ND2 ASN 400 E ASN 400 1_555 L C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 G ND2 ASN 60 G ASN 60 1_555 AA C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 G ND2 ASN 332 G ASN 332 1_555 Z C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 G SG CYS 400 G CYS 400 1_555 BA C01 KZB . G KZB 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale7 I N TYR 1 P TYR 2 1_555 CA C25 323 . P 323 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale8 J O4 NAG . K NAG 1 1_555 J C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale9 J O4 NAG . K NAG 2 1_555 J C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale10 J O3 BMA . K BMA 3 1_555 J C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 J O6 BMA . K BMA 3 1_555 J C1 MAN . K MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale12 J O2 MAN . K MAN 4 1_555 J C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale13 J O2 MAN . K MAN 5 1_555 J C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale14 K O4 NAG . I NAG 1 1_555 K C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale15 L O4 NAG . J NAG 1 1_555 L C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 A OD2 ASP 166 A ASP 166 1_555 M MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 575 n n 
C1 O1 NAG sing 576 n n 
C1 O5 NAG sing 577 n n 
C1 H1 NAG sing 578 n n 
C2 C3 NAG sing 579 n n 
C2 N2 NAG sing 580 n n 
C2 H2 NAG sing 581 n n 
C3 C4 NAG sing 582 n n 
C3 O3 NAG sing 583 n n 
C3 H3 NAG sing 584 n n 
C4 C5 NAG sing 585 n n 
C4 O4 NAG sing 586 n n 
C4 H4 NAG sing 587 n n 
C5 C6 NAG sing 588 n n 
C5 O5 NAG sing 589 n n 
C5 H5 NAG sing 590 n n 
C6 O6 NAG sing 591 n n 
C6 H61 NAG sing 592 n n 
C6 H62 NAG sing 593 n n 
C7 C8 NAG sing 594 n n 
C7 N2 NAG sing 595 n n 
C7 O7 NAG doub 596 n n 
C8 H81 NAG sing 597 n n 
C8 H82 NAG sing 598 n n 
C8 H83 NAG sing 599 n n 
N2 HN2 NAG sing 600 n n 
O1 HO1 NAG sing 601 n n 
O3 HO3 NAG sing 602 n n 
O4 HO4 NAG sing 603 n n 
O6 HO6 NAG sing 604 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8AGE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 12 MN A 1 801 1 MN MN . 
N 13 CPL A 1 802 809 CPL CPL . 
O 14 PTY A 1 803 901 PTY PTY . 
P 15 KZB A 1 804 1001 KZB DIG . 
Q 15 KZB A 1 805 1201 KZB DIG . 
R 15 KZB A 1 806 1401 KZB DIG . 
S 15 KZB B 1 101 101 KZB DIG . 
T 15 KZB B 1 102 201 KZB DIG . 
U 13 CPL B 1 103 501 CPL CPL . 
V 13 CPL E 1 501 506 CPL CPL . 
W 13 CPL F 1 301 298 CPL CPL . 
X 15 KZB F 1 302 401 KZB DIG . 
Y 15 KZB F 1 303 601 KZB DIG . 
Z 16 NAG G 1 501 503 NAG NAG . 
AA 16 NAG G 1 502 504 NAG NAG . 
BA 15 KZB G 1 503 701 KZB DIG . 
CA 17 323 P 1 101 101 323 323 . 
DA 18 HOH A 1 901 8 HOH HOH . 
DA 18 HOH A 2 902 9 HOH HOH . 
DA 18 HOH A 3 903 1 HOH HOH . 
DA 18 HOH A 4 904 2 HOH HOH . 
EA 18 HOH C 1 101 4 HOH HOH . 
FA 18 HOH E 1 601 3 HOH HOH . 
FA 18 HOH E 2 602 5 HOH HOH . 
GA 18 HOH G 1 601 7 HOH HOH . 
GA 18 HOH G 2 602 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . AA 16 146.224 148.484 72.466 1 134.5 ? C1 NAG 502 G 1 
HETATM 2 C C2 NAG . . . AA 16 145.675 147.044 72.286 1 134.5 ? C2 NAG 502 G 1 
HETATM 3 C C3 NAG . . . AA 16 144.315 147.047 71.595 1 134.5 ? C3 NAG 502 G 1 
HETATM 4 C C4 NAG . . . AA 16 143.577 148.34 71.896 1 134.5 ? C4 NAG 502 G 1 
HETATM 5 C C5 NAG . . . AA 16 144.303 149.486 71.209 1 134.5 ? C5 NAG 502 G 1 
HETATM 6 C C6 NAG . . . AA 16 143.917 150.841 71.754 1 134.5 ? C6 NAG 502 G 1 
HETATM 7 C C7 NAG . . . AA 16 147.051 146.419 70.326 1 134.5 ? C7 NAG 502 G 1 
HETATM 8 C C8 NAG . . . AA 16 148.026 145.419 69.783 1 134.5 ? C8 NAG 502 G 1 
HETATM 9 N N2 NAG . . . AA 16 146.62 146.195 71.575 1 134.5 ? N2 NAG 502 G 1 
HETATM 10 O O3 NAG . . . AA 16 143.552 145.934 72.045 1 134.5 ? O3 NAG 502 G 1 
HETATM 11 O O4 NAG . . . AA 16 142.244 148.265 71.402 1 134.5 ? O4 NAG 502 G 1 
HETATM 12 O O5 NAG . . . AA 16 145.726 149.359 71.375 1 134.5 ? O5 NAG 502 G 1 
HETATM 13 O O6 NAG . . . AA 16 142.506 151.004 71.78 1 134.5 ? O6 NAG 502 G 1 
HETATM 14 O O7 NAG . . . AA 16 146.672 147.381 69.663 1 134.5 ? O7 NAG 502 G 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#