data_8AHR
#
_model_server_result.job_id            3ShD03w0ASST-OBK3ABZkA 
_model_server_result.datetime_utc      '2024-11-13 02:56:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ahr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8AHR 
#
_exptl.entry_id    8AHR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8AHR 
_cell.length_a            61.19 
_cell.length_b            80.974 
_cell.length_c            98.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AHR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 144 A LYS 142 1_555 C C4A PLP . A PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 B NZ LYS 144 B LYS 142 1_555 D C4A PLP . B PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     8AHR 
_atom_sites.fract_transf_matrix[1][1]    0.016343 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 301 301 PLP PLP . 
D 2 PLP B 1 301 301 PLP PLP . 
E 3 HOH A 1 401 128 HOH HOH . 
E 3 HOH A 2 402 17 HOH HOH . 
E 3 HOH A 3 403 1 HOH HOH . 
E 3 HOH A 4 404 132 HOH HOH . 
E 3 HOH A 5 405 129 HOH HOH . 
E 3 HOH A 6 406 44 HOH HOH . 
E 3 HOH A 7 407 100 HOH HOH . 
E 3 HOH A 8 408 111 HOH HOH . 
E 3 HOH A 9 409 93 HOH HOH . 
E 3 HOH A 10 410 58 HOH HOH . 
E 3 HOH A 11 411 85 HOH HOH . 
E 3 HOH A 12 412 126 HOH HOH . 
E 3 HOH A 13 413 73 HOH HOH . 
E 3 HOH A 14 414 76 HOH HOH . 
E 3 HOH A 15 415 108 HOH HOH . 
E 3 HOH A 16 416 54 HOH HOH . 
E 3 HOH A 17 417 125 HOH HOH . 
E 3 HOH A 18 418 134 HOH HOH . 
E 3 HOH A 19 419 95 HOH HOH . 
E 3 HOH A 20 420 106 HOH HOH . 
E 3 HOH A 21 421 143 HOH HOH . 
E 3 HOH A 22 422 2 HOH HOH . 
E 3 HOH A 23 423 103 HOH HOH . 
E 3 HOH A 24 424 42 HOH HOH . 
E 3 HOH A 25 425 116 HOH HOH . 
E 3 HOH A 26 426 20 HOH HOH . 
E 3 HOH A 27 427 23 HOH HOH . 
E 3 HOH A 28 428 36 HOH HOH . 
E 3 HOH A 29 429 78 HOH HOH . 
E 3 HOH A 30 430 29 HOH HOH . 
E 3 HOH A 31 431 18 HOH HOH . 
E 3 HOH A 32 432 15 HOH HOH . 
E 3 HOH A 33 433 88 HOH HOH . 
E 3 HOH A 34 434 69 HOH HOH . 
E 3 HOH A 35 435 80 HOH HOH . 
E 3 HOH A 36 436 38 HOH HOH . 
E 3 HOH A 37 437 31 HOH HOH . 
E 3 HOH A 38 438 151 HOH HOH . 
E 3 HOH A 39 439 109 HOH HOH . 
E 3 HOH A 40 440 144 HOH HOH . 
E 3 HOH A 41 441 6 HOH HOH . 
E 3 HOH A 42 442 148 HOH HOH . 
E 3 HOH A 43 443 48 HOH HOH . 
E 3 HOH A 44 444 68 HOH HOH . 
E 3 HOH A 45 445 61 HOH HOH . 
E 3 HOH A 46 446 77 HOH HOH . 
E 3 HOH A 47 447 75 HOH HOH . 
E 3 HOH A 48 448 99 HOH HOH . 
E 3 HOH A 49 449 62 HOH HOH . 
E 3 HOH A 50 450 28 HOH HOH . 
E 3 HOH A 51 451 140 HOH HOH . 
E 3 HOH A 52 452 46 HOH HOH . 
E 3 HOH A 53 453 25 HOH HOH . 
E 3 HOH A 54 454 35 HOH HOH . 
E 3 HOH A 55 455 10 HOH HOH . 
E 3 HOH A 56 456 53 HOH HOH . 
E 3 HOH A 57 457 72 HOH HOH . 
E 3 HOH A 58 458 94 HOH HOH . 
E 3 HOH A 59 459 87 HOH HOH . 
E 3 HOH A 60 460 136 HOH HOH . 
E 3 HOH A 61 461 127 HOH HOH . 
E 3 HOH A 62 462 139 HOH HOH . 
E 3 HOH A 63 463 45 HOH HOH . 
E 3 HOH A 64 464 70 HOH HOH . 
E 3 HOH A 65 465 107 HOH HOH . 
E 3 HOH A 66 466 71 HOH HOH . 
E 3 HOH A 67 467 153 HOH HOH . 
E 3 HOH A 68 468 110 HOH HOH . 
E 3 HOH A 69 469 14 HOH HOH . 
E 3 HOH A 70 470 9 HOH HOH . 
E 3 HOH A 71 471 19 HOH HOH . 
E 3 HOH A 72 472 43 HOH HOH . 
E 3 HOH A 73 473 57 HOH HOH . 
E 3 HOH A 74 474 90 HOH HOH . 
E 3 HOH A 75 475 50 HOH HOH . 
E 3 HOH A 76 476 119 HOH HOH . 
E 3 HOH A 77 477 138 HOH HOH . 
E 3 HOH A 78 478 117 HOH HOH . 
E 3 HOH A 79 479 112 HOH HOH . 
F 3 HOH B 1 401 146 HOH HOH . 
F 3 HOH B 2 402 131 HOH HOH . 
F 3 HOH B 3 403 149 HOH HOH . 
F 3 HOH B 4 404 12 HOH HOH . 
F 3 HOH B 5 405 130 HOH HOH . 
F 3 HOH B 6 406 91 HOH HOH . 
F 3 HOH B 7 407 21 HOH HOH . 
F 3 HOH B 8 408 115 HOH HOH . 
F 3 HOH B 9 409 11 HOH HOH . 
F 3 HOH B 10 410 7 HOH HOH . 
F 3 HOH B 11 411 55 HOH HOH . 
F 3 HOH B 12 412 4 HOH HOH . 
F 3 HOH B 13 413 92 HOH HOH . 
F 3 HOH B 14 414 41 HOH HOH . 
F 3 HOH B 15 415 39 HOH HOH . 
F 3 HOH B 16 416 37 HOH HOH . 
F 3 HOH B 17 417 32 HOH HOH . 
F 3 HOH B 18 418 120 HOH HOH . 
F 3 HOH B 19 419 101 HOH HOH . 
F 3 HOH B 20 420 81 HOH HOH . 
F 3 HOH B 21 421 114 HOH HOH . 
F 3 HOH B 22 422 16 HOH HOH . 
F 3 HOH B 23 423 3 HOH HOH . 
F 3 HOH B 24 424 142 HOH HOH . 
F 3 HOH B 25 425 8 HOH HOH . 
F 3 HOH B 26 426 5 HOH HOH . 
F 3 HOH B 27 427 40 HOH HOH . 
F 3 HOH B 28 428 118 HOH HOH . 
F 3 HOH B 29 429 64 HOH HOH . 
F 3 HOH B 30 430 113 HOH HOH . 
F 3 HOH B 31 431 34 HOH HOH . 
F 3 HOH B 32 432 124 HOH HOH . 
F 3 HOH B 33 433 102 HOH HOH . 
F 3 HOH B 34 434 104 HOH HOH . 
F 3 HOH B 35 435 49 HOH HOH . 
F 3 HOH B 36 436 135 HOH HOH . 
F 3 HOH B 37 437 141 HOH HOH . 
F 3 HOH B 38 438 98 HOH HOH . 
F 3 HOH B 39 439 89 HOH HOH . 
F 3 HOH B 40 440 13 HOH HOH . 
F 3 HOH B 41 441 33 HOH HOH . 
F 3 HOH B 42 442 137 HOH HOH . 
F 3 HOH B 43 443 152 HOH HOH . 
F 3 HOH B 44 444 60 HOH HOH . 
F 3 HOH B 45 445 145 HOH HOH . 
F 3 HOH B 46 446 27 HOH HOH . 
F 3 HOH B 47 447 30 HOH HOH . 
F 3 HOH B 48 448 26 HOH HOH . 
F 3 HOH B 49 449 86 HOH HOH . 
F 3 HOH B 50 450 74 HOH HOH . 
F 3 HOH B 51 451 66 HOH HOH . 
F 3 HOH B 52 452 121 HOH HOH . 
F 3 HOH B 53 453 147 HOH HOH . 
F 3 HOH B 54 454 154 HOH HOH . 
F 3 HOH B 55 455 105 HOH HOH . 
F 3 HOH B 56 456 122 HOH HOH . 
F 3 HOH B 57 457 52 HOH HOH . 
F 3 HOH B 58 458 97 HOH HOH . 
F 3 HOH B 59 459 79 HOH HOH . 
F 3 HOH B 60 460 63 HOH HOH . 
F 3 HOH B 61 461 133 HOH HOH . 
F 3 HOH B 62 462 150 HOH HOH . 
F 3 HOH B 63 463 82 HOH HOH . 
F 3 HOH B 64 464 22 HOH HOH . 
F 3 HOH B 65 465 123 HOH HOH . 
F 3 HOH B 66 466 47 HOH HOH . 
F 3 HOH B 67 467 96 HOH HOH . 
F 3 HOH B 68 468 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 27.317 -1.537 5.278 1 30.29 ? N1 PLP 301 A 1 
HETATM 2 C C2 PLP . . . C 2 28.173 -1.865 6.238 1 34.88 ? C2 PLP 301 A 1 
HETATM 3 C C2A PLP . . . C 2 29.016 -0.773 6.829 1 33.67 ? C2A PLP 301 A 1 
HETATM 4 C C3 PLP . . . C 2 28.246 -3.217 6.687 1 26.52 ? C3 PLP 301 A 1 
HETATM 5 O O3 PLP . . . C 2 29.191 -3.495 7.585 1 26.4 ? O3 PLP 301 A 1 
HETATM 6 C C4 PLP . . . C 2 27.469 -4.227 6.056 1 26.35 ? C4 PLP 301 A 1 
HETATM 7 C C4A PLP . . . C 2 27.667 -5.648 6.427 1 29.08 ? C4A PLP 301 A 1 
HETATM 8 C C5 PLP . . . C 2 26.569 -3.822 5.047 1 27.51 ? C5 PLP 301 A 1 
HETATM 9 C C6 PLP . . . C 2 26.547 -2.494 4.699 1 30.53 ? C6 PLP 301 A 1 
HETATM 10 C C5A PLP . . . C 2 25.587 -4.758 4.386 1 26.44 ? C5A PLP 301 A 1 
HETATM 11 O O4P PLP . . . C 2 26.237 -5.74 3.556 1 26.31 ? O4P PLP 301 A 1 
HETATM 12 P P PLP . . . C 2 25.329 -6.782 2.848 1 25.14 ? P PLP 301 A 1 
HETATM 13 O O1P PLP . . . C 2 26.307 -7.578 2.032 1 22.8 ? O1P PLP 301 A 1 
HETATM 14 O O2P PLP . . . C 2 24.668 -7.581 3.97 1 25.28 ? O2P PLP 301 A 1 
HETATM 15 O O3P PLP . . . C 2 24.236 -6.021 2.039 1 21.19 ? O3P PLP 301 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#