data_8AIE # _model_server_result.job_id Lz3j_YJj0EVRjeMrOHhQWw _model_server_result.datetime_utc '2024-11-28 19:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8AIE # _exptl.entry_id 8AIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AIE _cell.length_a 61.968 _cell.length_b 90.028 _cell.length_c 100.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H13 N2 O5 P' _chem_comp.formula_weight 248.173 _chem_comp.id PMP _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PMP doub 336 n y N1 C6 PMP sing 337 n y C2 C2A PMP sing 338 n n C2 C3 PMP sing 339 n y C2A H2A1 PMP sing 340 n n C2A H2A2 PMP sing 341 n n C2A H2A3 PMP sing 342 n n C3 O3 PMP sing 343 n n C3 C4 PMP doub 344 n y O3 HO3 PMP sing 345 n n C4 C4A PMP sing 346 n n C4 C5 PMP sing 347 n y C4A N4A PMP sing 348 n n C4A H4A1 PMP sing 349 n n C4A H4A2 PMP sing 350 n n N4A HNA1 PMP sing 351 n n N4A HNA2 PMP sing 352 n n C5 C6 PMP doub 353 n y C5 C5A PMP sing 354 n n C6 H6 PMP sing 355 n n C5A O4P PMP sing 356 n n C5A H5A1 PMP sing 357 n n C5A H5A2 PMP sing 358 n n O4P P PMP sing 359 n n P O1P PMP doub 360 n n P O2P PMP sing 361 n n P O3P PMP sing 362 n n O2P HOP2 PMP sing 363 n n O3P HOP3 PMP sing 364 n n # _atom_sites.entry_id 8AIE _atom_sites.fract_transf_matrix[1][1] 0.016137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LCS A 1 301 301 LCS 00I . D 3 PMP A 1 302 303 PMP PMP . E 4 M7L B 1 301 301 M7L 00P . F 3 PMP B 1 302 302 PMP PMP . G 5 HOH A 1 401 245 HOH HOH . G 5 HOH A 2 402 60 HOH HOH . G 5 HOH A 3 403 176 HOH HOH . G 5 HOH A 4 404 51 HOH HOH . G 5 HOH A 5 405 40 HOH HOH . G 5 HOH A 6 406 136 HOH HOH . G 5 HOH A 7 407 171 HOH HOH . G 5 HOH A 8 408 25 HOH HOH . G 5 HOH A 9 409 64 HOH HOH . G 5 HOH A 10 410 37 HOH HOH . G 5 HOH A 11 411 55 HOH HOH . G 5 HOH A 12 412 41 HOH HOH . G 5 HOH A 13 413 230 HOH HOH . G 5 HOH A 14 414 198 HOH HOH . G 5 HOH A 15 415 246 HOH HOH . G 5 HOH A 16 416 182 HOH HOH . G 5 HOH A 17 417 72 HOH HOH . G 5 HOH A 18 418 150 HOH HOH . G 5 HOH A 19 419 215 HOH HOH . G 5 HOH A 20 420 129 HOH HOH . G 5 HOH A 21 421 56 HOH HOH . G 5 HOH A 22 422 189 HOH HOH . G 5 HOH A 23 423 5 HOH HOH . G 5 HOH A 24 424 62 HOH HOH . G 5 HOH A 25 425 139 HOH HOH . G 5 HOH A 26 426 226 HOH HOH . G 5 HOH A 27 427 18 HOH HOH . G 5 HOH A 28 428 69 HOH HOH . G 5 HOH A 29 429 232 HOH HOH . G 5 HOH A 30 430 9 HOH HOH . G 5 HOH A 31 431 98 HOH HOH . G 5 HOH A 32 432 124 HOH HOH . G 5 HOH A 33 433 32 HOH HOH . G 5 HOH A 34 434 70 HOH HOH . G 5 HOH A 35 435 10 HOH HOH . G 5 HOH A 36 436 195 HOH HOH . G 5 HOH A 37 437 137 HOH HOH . G 5 HOH A 38 438 128 HOH HOH . G 5 HOH A 39 439 97 HOH HOH . G 5 HOH A 40 440 116 HOH HOH . G 5 HOH A 41 441 16 HOH HOH . G 5 HOH A 42 442 191 HOH HOH . G 5 HOH A 43 443 38 HOH HOH . G 5 HOH A 44 444 193 HOH HOH . G 5 HOH A 45 445 26 HOH HOH . G 5 HOH A 46 446 224 HOH HOH . G 5 HOH A 47 447 21 HOH HOH . G 5 HOH A 48 448 30 HOH HOH . G 5 HOH A 49 449 2 HOH HOH . G 5 HOH A 50 450 207 HOH HOH . G 5 HOH A 51 451 229 HOH HOH . G 5 HOH A 52 452 46 HOH HOH . G 5 HOH A 53 453 210 HOH HOH . G 5 HOH A 54 454 7 HOH HOH . G 5 HOH A 55 455 4 HOH HOH . G 5 HOH A 56 456 196 HOH HOH . G 5 HOH A 57 457 101 HOH HOH . G 5 HOH A 58 458 35 HOH HOH . G 5 HOH A 59 459 110 HOH HOH . G 5 HOH A 60 460 68 HOH HOH . G 5 HOH A 61 461 134 HOH HOH . G 5 HOH A 62 462 175 HOH HOH . G 5 HOH A 63 463 132 HOH HOH . G 5 HOH A 64 464 79 HOH HOH . G 5 HOH A 65 465 27 HOH HOH . G 5 HOH A 66 466 178 HOH HOH . G 5 HOH A 67 467 49 HOH HOH . G 5 HOH A 68 468 105 HOH HOH . G 5 HOH A 69 469 47 HOH HOH . G 5 HOH A 70 470 165 HOH HOH . G 5 HOH A 71 471 107 HOH HOH . G 5 HOH A 72 472 109 HOH HOH . G 5 HOH A 73 473 82 HOH HOH . G 5 HOH A 74 474 185 HOH HOH . G 5 HOH A 75 475 84 HOH HOH . G 5 HOH A 76 476 220 HOH HOH . G 5 HOH A 77 477 11 HOH HOH . G 5 HOH A 78 478 143 HOH HOH . G 5 HOH A 79 479 80 HOH HOH . G 5 HOH A 80 480 157 HOH HOH . G 5 HOH A 81 481 76 HOH HOH . G 5 HOH A 82 482 167 HOH HOH . G 5 HOH A 83 483 227 HOH HOH . G 5 HOH A 84 484 95 HOH HOH . G 5 HOH A 85 485 39 HOH HOH . G 5 HOH A 86 486 125 HOH HOH . G 5 HOH A 87 487 75 HOH HOH . G 5 HOH A 88 488 164 HOH HOH . G 5 HOH A 89 489 168 HOH HOH . G 5 HOH A 90 490 222 HOH HOH . G 5 HOH A 91 491 104 HOH HOH . G 5 HOH A 92 492 214 HOH HOH . G 5 HOH A 93 493 145 HOH HOH . G 5 HOH A 94 494 209 HOH HOH . G 5 HOH A 95 495 211 HOH HOH . G 5 HOH A 96 496 99 HOH HOH . G 5 HOH A 97 497 225 HOH HOH . G 5 HOH A 98 498 127 HOH HOH . G 5 HOH A 99 499 247 HOH HOH . G 5 HOH A 100 500 113 HOH HOH . G 5 HOH A 101 501 73 HOH HOH . G 5 HOH A 102 502 197 HOH HOH . G 5 HOH A 103 503 239 HOH HOH . G 5 HOH A 104 504 144 HOH HOH . G 5 HOH A 105 505 235 HOH HOH . G 5 HOH A 106 506 138 HOH HOH . G 5 HOH A 107 507 158 HOH HOH . G 5 HOH A 108 508 205 HOH HOH . G 5 HOH A 109 509 208 HOH HOH . G 5 HOH A 110 510 121 HOH HOH . G 5 HOH A 111 511 187 HOH HOH . G 5 HOH A 112 512 218 HOH HOH . G 5 HOH A 113 513 217 HOH HOH . G 5 HOH A 114 514 169 HOH HOH . G 5 HOH A 115 515 142 HOH HOH . H 5 HOH B 1 401 151 HOH HOH . H 5 HOH B 2 402 248 HOH HOH . H 5 HOH B 3 403 52 HOH HOH . H 5 HOH B 4 404 94 HOH HOH . H 5 HOH B 5 405 23 HOH HOH . H 5 HOH B 6 406 141 HOH HOH . H 5 HOH B 7 407 103 HOH HOH . H 5 HOH B 8 408 180 HOH HOH . H 5 HOH B 9 409 149 HOH HOH . H 5 HOH B 10 410 228 HOH HOH . H 5 HOH B 11 411 238 HOH HOH . H 5 HOH B 12 412 65 HOH HOH . H 5 HOH B 13 413 50 HOH HOH . H 5 HOH B 14 414 81 HOH HOH . H 5 HOH B 15 415 221 HOH HOH . H 5 HOH B 16 416 17 HOH HOH . H 5 HOH B 17 417 177 HOH HOH . H 5 HOH B 18 418 13 HOH HOH . H 5 HOH B 19 419 179 HOH HOH . H 5 HOH B 20 420 54 HOH HOH . H 5 HOH B 21 421 186 HOH HOH . H 5 HOH B 22 422 42 HOH HOH . H 5 HOH B 23 423 152 HOH HOH . H 5 HOH B 24 424 203 HOH HOH . H 5 HOH B 25 425 86 HOH HOH . H 5 HOH B 26 426 14 HOH HOH . H 5 HOH B 27 427 29 HOH HOH . H 5 HOH B 28 428 96 HOH HOH . H 5 HOH B 29 429 181 HOH HOH . H 5 HOH B 30 430 6 HOH HOH . H 5 HOH B 31 431 90 HOH HOH . H 5 HOH B 32 432 20 HOH HOH . H 5 HOH B 33 433 12 HOH HOH . H 5 HOH B 34 434 8 HOH HOH . H 5 HOH B 35 435 123 HOH HOH . H 5 HOH B 36 436 1 HOH HOH . H 5 HOH B 37 437 85 HOH HOH . H 5 HOH B 38 438 231 HOH HOH . H 5 HOH B 39 439 91 HOH HOH . H 5 HOH B 40 440 154 HOH HOH . H 5 HOH B 41 441 61 HOH HOH . H 5 HOH B 42 442 213 HOH HOH . H 5 HOH B 43 443 48 HOH HOH . H 5 HOH B 44 444 83 HOH HOH . H 5 HOH B 45 445 251 HOH HOH . H 5 HOH B 46 446 36 HOH HOH . H 5 HOH B 47 447 19 HOH HOH . H 5 HOH B 48 448 22 HOH HOH . H 5 HOH B 49 449 74 HOH HOH . H 5 HOH B 50 450 163 HOH HOH . H 5 HOH B 51 451 174 HOH HOH . H 5 HOH B 52 452 156 HOH HOH . H 5 HOH B 53 453 237 HOH HOH . H 5 HOH B 54 454 234 HOH HOH . H 5 HOH B 55 455 24 HOH HOH . H 5 HOH B 56 456 122 HOH HOH . H 5 HOH B 57 457 71 HOH HOH . H 5 HOH B 58 458 183 HOH HOH . H 5 HOH B 59 459 33 HOH HOH . H 5 HOH B 60 460 53 HOH HOH . H 5 HOH B 61 461 44 HOH HOH . H 5 HOH B 62 462 59 HOH HOH . H 5 HOH B 63 463 119 HOH HOH . H 5 HOH B 64 464 206 HOH HOH . H 5 HOH B 65 465 58 HOH HOH . H 5 HOH B 66 466 43 HOH HOH . H 5 HOH B 67 467 3 HOH HOH . H 5 HOH B 68 468 78 HOH HOH . H 5 HOH B 69 469 199 HOH HOH . H 5 HOH B 70 470 219 HOH HOH . H 5 HOH B 71 471 133 HOH HOH . H 5 HOH B 72 472 159 HOH HOH . H 5 HOH B 73 473 242 HOH HOH . H 5 HOH B 74 474 106 HOH HOH . H 5 HOH B 75 475 155 HOH HOH . H 5 HOH B 76 476 162 HOH HOH . H 5 HOH B 77 477 192 HOH HOH . H 5 HOH B 78 478 148 HOH HOH . H 5 HOH B 79 479 118 HOH HOH . H 5 HOH B 80 480 88 HOH HOH . H 5 HOH B 81 481 223 HOH HOH . H 5 HOH B 82 482 102 HOH HOH . H 5 HOH B 83 483 28 HOH HOH . H 5 HOH B 84 484 63 HOH HOH . H 5 HOH B 85 485 212 HOH HOH . H 5 HOH B 86 486 57 HOH HOH . H 5 HOH B 87 487 130 HOH HOH . H 5 HOH B 88 488 241 HOH HOH . H 5 HOH B 89 489 146 HOH HOH . H 5 HOH B 90 490 240 HOH HOH . H 5 HOH B 91 491 200 HOH HOH . H 5 HOH B 92 492 188 HOH HOH . H 5 HOH B 93 493 15 HOH HOH . H 5 HOH B 94 494 92 HOH HOH . H 5 HOH B 95 495 34 HOH HOH . H 5 HOH B 96 496 166 HOH HOH . H 5 HOH B 97 497 204 HOH HOH . H 5 HOH B 98 498 77 HOH HOH . H 5 HOH B 99 499 147 HOH HOH . H 5 HOH B 100 500 100 HOH HOH . H 5 HOH B 101 501 115 HOH HOH . H 5 HOH B 102 502 249 HOH HOH . H 5 HOH B 103 503 108 HOH HOH . H 5 HOH B 104 504 173 HOH HOH . H 5 HOH B 105 505 87 HOH HOH . H 5 HOH B 106 506 120 HOH HOH . H 5 HOH B 107 507 160 HOH HOH . H 5 HOH B 108 508 31 HOH HOH . H 5 HOH B 109 509 184 HOH HOH . H 5 HOH B 110 510 236 HOH HOH . H 5 HOH B 111 511 250 HOH HOH . H 5 HOH B 112 512 112 HOH HOH . H 5 HOH B 113 513 126 HOH HOH . H 5 HOH B 114 514 161 HOH HOH . H 5 HOH B 115 515 117 HOH HOH . H 5 HOH B 116 516 170 HOH HOH . H 5 HOH B 117 517 172 HOH HOH . H 5 HOH B 118 518 131 HOH HOH . H 5 HOH B 119 519 216 HOH HOH . H 5 HOH B 120 520 140 HOH HOH . H 5 HOH B 121 521 93 HOH HOH . H 5 HOH B 122 522 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PMP . B . D 3 -3.057 -3.151 4.488 0.35 19.45 ? N1 PMP 302 A 1 HETATM 2 C C2 PMP . B . D 3 -2.39 -3.63 5.534 0.35 20.96 ? C2 PMP 302 A 1 HETATM 3 C C2A PMP . B . D 3 -1.36 -2.764 6.195 0.35 20.13 ? C2A PMP 302 A 1 HETATM 4 C C3 PMP . B . D 3 -2.648 -4.918 6.001 0.35 20.54 ? C3 PMP 302 A 1 HETATM 5 O O3 PMP . B . D 3 -1.972 -5.375 7.078 0.35 22.74 ? O3 PMP 302 A 1 HETATM 6 C C4 PMP . B . D 3 -3.601 -5.721 5.37 0.35 21.31 ? C4 PMP 302 A 1 HETATM 7 C C4A PMP . B . D 3 -3.902 -7.105 5.884 0.35 23.25 ? C4A PMP 302 A 1 HETATM 8 N N4A PMP . B . D 3 -5.331 -7.418 5.836 0.35 25.84 ? N4A PMP 302 A 1 HETATM 9 C C5 PMP . B . D 3 -4.305 -5.189 4.283 0.35 21.02 ? C5 PMP 302 A 1 HETATM 10 C C6 PMP . B . D 3 -3.972 -3.916 3.87 0.35 19.99 ? C6 PMP 302 A 1 HETATM 11 C C5A PMP . B . D 3 -5.311 -6.004 3.534 0.35 20.43 ? C5A PMP 302 A 1 HETATM 12 O O4P PMP . B . D 3 -4.58 -7.053 2.828 0.35 19.73 ? O4P PMP 302 A 1 HETATM 13 P P PMP . B . D 3 -5.248 -8.457 2.325 0.35 19.9 ? P PMP 302 A 1 HETATM 14 O O1P PMP . B . D 3 -4.307 -8.905 1.23 0.35 19.61 ? O1P PMP 302 A 1 HETATM 15 O O2P PMP . B . D 3 -6.646 -8.079 1.808 0.35 17.83 ? O2P PMP 302 A 1 HETATM 16 O O3P PMP . B . D 3 -5.258 -9.346 3.56 0.35 18.13 ? O3P PMP 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #