data_8AIP # _model_server_result.job_id S71gAqcdpEe-6yDKid1SUw _model_server_result.datetime_utc '2024-10-10 07:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8AIP # _exptl.entry_id 8AIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AIP _cell.length_a 97.962 _cell.length_b 97.962 _cell.length_c 97.962 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall 'P 2 2 3' _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 122 A HIS 156 1_555 C CU CU . A CU 402 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A NE2 HIS 124 A HIS 158 1_555 D CU CU . A CU 403 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 A ND1 HIS 197 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 A NE2 HIS 202 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 A NE2 HIS 253 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc6 A SG CYS 254 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 A NE2 HIS 255 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 A ND1 HIS 259 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc9 C CU CU . A CU 402 1_555 E O1 OXY . A OXY 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc10 C CU CU . A CU 402 1_555 E O2 OXY . A OXY 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc11 D CU CU . A CU 403 1_555 E O1 OXY . A OXY 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc12 D CU CU . A CU 403 1_555 E O2 OXY . A OXY 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 237 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 8AIP _atom_sites.fract_transf_matrix[1][1] 0.010208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 401 CU CU . C 2 CU A 1 402 402 CU CU . D 2 CU A 1 403 403 CU CU . E 3 OXY A 1 404 501 OXY OXY . F 4 HOH A 1 501 16 HOH HOH . F 4 HOH A 2 502 68 HOH HOH . F 4 HOH A 3 503 56 HOH HOH . F 4 HOH A 4 504 26 HOH HOH . F 4 HOH A 5 505 82 HOH HOH . F 4 HOH A 6 506 9 HOH HOH . F 4 HOH A 7 507 20 HOH HOH . F 4 HOH A 8 508 3 HOH HOH . F 4 HOH A 9 509 5 HOH HOH . F 4 HOH A 10 510 51 HOH HOH . F 4 HOH A 11 511 24 HOH HOH . F 4 HOH A 12 512 34 HOH HOH . F 4 HOH A 13 513 78 HOH HOH . F 4 HOH A 14 514 53 HOH HOH . F 4 HOH A 15 515 13 HOH HOH . F 4 HOH A 16 516 6 HOH HOH . F 4 HOH A 17 517 55 HOH HOH . F 4 HOH A 18 518 29 HOH HOH . F 4 HOH A 19 519 63 HOH HOH . F 4 HOH A 20 520 65 HOH HOH . F 4 HOH A 21 521 7 HOH HOH . F 4 HOH A 22 522 47 HOH HOH . F 4 HOH A 23 523 19 HOH HOH . F 4 HOH A 24 524 23 HOH HOH . F 4 HOH A 25 525 80 HOH HOH . F 4 HOH A 26 526 67 HOH HOH . F 4 HOH A 27 527 74 HOH HOH . F 4 HOH A 28 528 22 HOH HOH . F 4 HOH A 29 529 4 HOH HOH . F 4 HOH A 30 530 61 HOH HOH . F 4 HOH A 31 531 37 HOH HOH . F 4 HOH A 32 532 42 HOH HOH . F 4 HOH A 33 533 39 HOH HOH . F 4 HOH A 34 534 54 HOH HOH . F 4 HOH A 35 535 75 HOH HOH . F 4 HOH A 36 536 43 HOH HOH . F 4 HOH A 37 537 71 HOH HOH . F 4 HOH A 38 538 32 HOH HOH . F 4 HOH A 39 539 1 HOH HOH . F 4 HOH A 40 540 64 HOH HOH . F 4 HOH A 41 541 27 HOH HOH . F 4 HOH A 42 542 60 HOH HOH . F 4 HOH A 43 543 73 HOH HOH . F 4 HOH A 44 544 12 HOH HOH . F 4 HOH A 45 545 72 HOH HOH . F 4 HOH A 46 546 45 HOH HOH . F 4 HOH A 47 547 17 HOH HOH . F 4 HOH A 48 548 38 HOH HOH . F 4 HOH A 49 549 25 HOH HOH . F 4 HOH A 50 550 49 HOH HOH . F 4 HOH A 51 551 18 HOH HOH . F 4 HOH A 52 552 2 HOH HOH . F 4 HOH A 53 553 59 HOH HOH . F 4 HOH A 54 554 30 HOH HOH . F 4 HOH A 55 555 15 HOH HOH . F 4 HOH A 56 556 35 HOH HOH . F 4 HOH A 57 557 14 HOH HOH . F 4 HOH A 58 558 83 HOH HOH . F 4 HOH A 59 559 46 HOH HOH . F 4 HOH A 60 560 69 HOH HOH . F 4 HOH A 61 561 33 HOH HOH . F 4 HOH A 62 562 76 HOH HOH . F 4 HOH A 63 563 11 HOH HOH . F 4 HOH A 64 564 10 HOH HOH . F 4 HOH A 65 565 62 HOH HOH . F 4 HOH A 66 566 77 HOH HOH . F 4 HOH A 67 567 40 HOH HOH . F 4 HOH A 68 568 8 HOH HOH . F 4 HOH A 69 569 48 HOH HOH . F 4 HOH A 70 570 28 HOH HOH . F 4 HOH A 71 571 70 HOH HOH . F 4 HOH A 72 572 79 HOH HOH . F 4 HOH A 73 573 50 HOH HOH . F 4 HOH A 74 574 36 HOH HOH . F 4 HOH A 75 575 44 HOH HOH . F 4 HOH A 76 576 66 HOH HOH . F 4 HOH A 77 577 21 HOH HOH . F 4 HOH A 78 578 31 HOH HOH . F 4 HOH A 79 579 57 HOH HOH . F 4 HOH A 80 580 52 HOH HOH . F 4 HOH A 81 581 58 HOH HOH . F 4 HOH A 82 582 41 HOH HOH . F 4 HOH A 83 583 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . E 3 28.442 -14.71 40.082 1 30.67 ? O1 OXY 404 A 1 HETATM 2 O O2 OXY . . . E 3 28.785 -15.482 40.965 1 34.55 ? O2 OXY 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 2 #