data_8AIV
#
_model_server_result.job_id            ibiTf9cukGM4ILQFWlO-4w 
_model_server_result.datetime_utc      '2024-11-21 09:29:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8aiv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8AIV 
#
_exptl.entry_id    8AIV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              519.591 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.103 
_cell.angle_gamma         90 
_cell.entry_id            8AIV 
_cell.length_a            45.836 
_cell.length_b            63.408 
_cell.length_c            103.374 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AIV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 AAA CYS 145 1_555 C C18 MFL . AAA MFL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
covale ? covale2 B SG CYS 145 BBB CYS 145 1_555 E C18 MFL . BBB MFL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
#
_chem_comp.formula           'C25 H37 N5 O7' 
_chem_comp.formula_weight    519.591 
_chem_comp.id                MFL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl N-[1-[(2S)-3-cyclopropyl-1-[[(2S,3R)-4-(methylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'tert-butyl (1-((S)-3-cyclopropyl-1-(((S)-4-(methylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate;MG-100 inhibitor (covalently bound to protein)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C2 MFL sing 237 n n 
C3 C2 MFL sing 238 n n 
C2 C1 MFL sing 239 n n 
C2 O1 MFL sing 240 n n 
O1 C5 MFL sing 241 n n 
C5 O2 MFL doub 242 n n 
C5 N1 MFL sing 243 n n 
N1 C6 MFL sing 244 n n 
C6 C10 MFL doub 245 n n 
C6 C7 MFL sing 246 n n 
C10 C9 MFL sing 247 n n 
N4 C22 MFL sing 248 n n 
N4 C23 MFL sing 249 n n 
C22 C21 MFL sing 250 n n 
O3 C7 MFL doub 251 n n 
C7 N2 MFL sing 252 n n 
O5 C23 MFL doub 253 n n 
C23 C20 MFL sing 254 n n 
C9 C8 MFL doub 255 n n 
C21 C20 MFL sing 256 n n 
C20 C19 MFL sing 257 n n 
N2 C8 MFL sing 258 n n 
N2 C11 MFL sing 259 n n 
C11 C12 MFL sing 260 n n 
C11 C13 MFL sing 261 n n 
O4 C12 MFL doub 262 n n 
C19 C17 MFL sing 263 n n 
C12 N3 MFL sing 264 n n 
N3 C17 MFL sing 265 n n 
C17 C18 MFL sing 266 n n 
C14 C15 MFL sing 267 n n 
C14 C13 MFL sing 268 n n 
C14 C16 MFL sing 269 n n 
C15 C16 MFL sing 270 n n 
C18 O6 MFL sing 271 n n 
C18 C24 MFL sing 272 n n 
O7 C24 MFL doub 273 n n 
C24 N5 MFL sing 274 n n 
N5 C25 MFL sing 275 n n 
N1 H1 MFL sing 276 n n 
N3 H2 MFL sing 277 n n 
C4 H3 MFL sing 278 n n 
C4 H4 MFL sing 279 n n 
C4 H5 MFL sing 280 n n 
C8 H6 MFL sing 281 n n 
C10 H7 MFL sing 282 n n 
C13 H8 MFL sing 283 n n 
C13 H9 MFL sing 284 n n 
C15 H10 MFL sing 285 n n 
C15 H11 MFL sing 286 n n 
C17 H12 MFL sing 287 n n 
C20 H13 MFL sing 288 n n 
C21 H14 MFL sing 289 n n 
C21 H15 MFL sing 290 n n 
C22 H16 MFL sing 291 n n 
C22 H17 MFL sing 292 n n 
C1 H18 MFL sing 293 n n 
C1 H19 MFL sing 294 n n 
C1 H20 MFL sing 295 n n 
C3 H21 MFL sing 296 n n 
C3 H22 MFL sing 297 n n 
C3 H23 MFL sing 298 n n 
C9 H24 MFL sing 299 n n 
C11 H25 MFL sing 300 n n 
C14 H26 MFL sing 301 n n 
C16 H27 MFL sing 302 n n 
C16 H28 MFL sing 303 n n 
C18 H29 MFL sing 304 n n 
C19 H30 MFL sing 305 n n 
C19 H31 MFL sing 306 n n 
N4 H32 MFL sing 307 n n 
O6 H33 MFL sing 308 n n 
N5 H34 MFL sing 309 n n 
C25 H35 MFL sing 310 n n 
C25 H36 MFL sing 311 n n 
C25 H37 MFL sing 312 n n 
#
_atom_sites.entry_id                     8AIV 
_atom_sites.fract_transf_matrix[1][1]    0.021817 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009675 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MFL AAA 1 401 401 MFL LIG . 
D 3 CL AAA 1 402 1 CL CL . 
E 2 MFL BBB 1 401 401 MFL LIG . 
F 4 HOH AAA 1 501 36 HOH HOH . 
F 4 HOH AAA 2 502 43 HOH HOH . 
F 4 HOH AAA 3 503 7 HOH HOH . 
F 4 HOH AAA 4 504 39 HOH HOH . 
F 4 HOH AAA 5 505 46 HOH HOH . 
F 4 HOH AAA 6 506 47 HOH HOH . 
F 4 HOH AAA 7 507 44 HOH HOH . 
F 4 HOH AAA 8 508 37 HOH HOH . 
F 4 HOH AAA 9 509 68 HOH HOH . 
F 4 HOH AAA 10 510 25 HOH HOH . 
F 4 HOH AAA 11 511 51 HOH HOH . 
F 4 HOH AAA 12 512 20 HOH HOH . 
F 4 HOH AAA 13 513 23 HOH HOH . 
F 4 HOH AAA 14 514 9 HOH HOH . 
F 4 HOH AAA 15 515 22 HOH HOH . 
F 4 HOH AAA 16 516 40 HOH HOH . 
F 4 HOH AAA 17 517 38 HOH HOH . 
F 4 HOH AAA 18 518 8 HOH HOH . 
F 4 HOH AAA 19 519 34 HOH HOH . 
F 4 HOH AAA 20 520 52 HOH HOH . 
F 4 HOH AAA 21 521 26 HOH HOH . 
F 4 HOH AAA 22 522 16 HOH HOH . 
F 4 HOH AAA 23 523 50 HOH HOH . 
F 4 HOH AAA 24 524 18 HOH HOH . 
F 4 HOH AAA 25 525 69 HOH HOH . 
F 4 HOH AAA 26 526 2 HOH HOH . 
F 4 HOH AAA 27 527 6 HOH HOH . 
F 4 HOH AAA 28 528 74 HOH HOH . 
F 4 HOH AAA 29 529 72 HOH HOH . 
F 4 HOH AAA 30 530 19 HOH HOH . 
F 4 HOH AAA 31 531 13 HOH HOH . 
F 4 HOH AAA 32 532 49 HOH HOH . 
F 4 HOH AAA 33 533 48 HOH HOH . 
G 4 HOH BBB 1 501 27 HOH HOH . 
G 4 HOH BBB 2 502 53 HOH HOH . 
G 4 HOH BBB 3 503 4 HOH HOH . 
G 4 HOH BBB 4 504 57 HOH HOH . 
G 4 HOH BBB 5 505 45 HOH HOH . 
G 4 HOH BBB 6 506 29 HOH HOH . 
G 4 HOH BBB 7 507 17 HOH HOH . 
G 4 HOH BBB 8 508 73 HOH HOH . 
G 4 HOH BBB 9 509 15 HOH HOH . 
G 4 HOH BBB 10 510 55 HOH HOH . 
G 4 HOH BBB 11 511 62 HOH HOH . 
G 4 HOH BBB 12 512 30 HOH HOH . 
G 4 HOH BBB 13 513 32 HOH HOH . 
G 4 HOH BBB 14 514 60 HOH HOH . 
G 4 HOH BBB 15 515 54 HOH HOH . 
G 4 HOH BBB 16 516 58 HOH HOH . 
G 4 HOH BBB 17 517 31 HOH HOH . 
G 4 HOH BBB 18 518 59 HOH HOH . 
G 4 HOH BBB 19 519 67 HOH HOH . 
G 4 HOH BBB 20 520 65 HOH HOH . 
G 4 HOH BBB 21 521 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MFL . . . C 2 -8.187 1.384 18.058 1 31.85 0 N1 MFL 401 AAA 1 
HETATM 2 N N3 MFL . . . C 2 -6.799 0.702 23.956 1 29.03 0 N3 MFL 401 AAA 1 
HETATM 3 C C4 MFL . . . C 2 -7.087 -1.079 14.463 1 41.05 0 C4 MFL 401 AAA 1 
HETATM 4 C C5 MFL . . . C 2 -8.842 0.873 16.987 1 35.34 0 C5 MFL 401 AAA 1 
HETATM 5 C C6 MFL . . . C 2 -8.774 1.923 19.22 1 30.2 0 C6 MFL 401 AAA 1 
HETATM 6 C C7 MFL . . . C 2 -8.001 1.961 20.379 1 30.3 0 C7 MFL 401 AAA 1 
HETATM 7 C C8 MFL . . . C 2 -9.923 2.903 21.513 1 32.09 0 C8 MFL 401 AAA 1 
HETATM 8 C C10 MFL . . . C 2 -10.106 2.368 19.224 1 31 0 C10 MFL 401 AAA 1 
HETATM 9 C C13 MFL . . . C 2 -8.216 3.661 23.732 1 27.09 0 C13 MFL 401 AAA 1 
HETATM 10 C C15 MFL . . . C 2 -7.694 6.18 24.176 1 25.91 0 C15 MFL 401 AAA 1 
HETATM 11 C C17 MFL . . . C 2 -6.709 -0.453 24.83 1 30.5 0 C17 MFL 401 AAA 1 
HETATM 12 C C20 MFL . . . C 2 -5.955 -2.558 23.522 1 31.01 0 C20 MFL 401 AAA 1 
HETATM 13 C C21 MFL . . . C 2 -7.309 -2.607 22.823 1 32.31 0 C21 MFL 401 AAA 1 
HETATM 14 C C22 MFL . . . C 2 -7.093 -3.559 21.637 1 31.91 0 C22 MFL 401 AAA 1 
HETATM 15 C C24 MFL . . . C 2 -7.085 -0.899 27.326 1 33.62 0 C24 MFL 401 AAA 1 
HETATM 16 C C1 MFL . . . C 2 -9.512 -0.493 14.408 1 40.7 0 C1 MFL 401 AAA 1 
HETATM 17 C C2 MFL . . . C 2 -8.129 -0.037 14.818 1 39.15 0 C2 MFL 401 AAA 1 
HETATM 18 C C3 MFL . . . C 2 -7.815 1.322 14.229 1 40.94 0 C3 MFL 401 AAA 1 
HETATM 19 O O1 MFL . . . C 2 -8.01 0.091 16.288 1 36.33 0 O1 MFL 401 AAA 1 
HETATM 20 O O2 MFL . . . C 2 -9.992 1.092 16.7 1 42.88 0 O2 MFL 401 AAA 1 
HETATM 21 N N2 MFL . . . C 2 -8.613 2.51 21.517 1 31.78 0 N2 MFL 401 AAA 1 
HETATM 22 C C9 MFL . . . C 2 -10.675 2.836 20.4 1 30.56 0 C9 MFL 401 AAA 1 
HETATM 23 O O3 MFL . . . C 2 -6.842 1.588 20.474 1 30.2 0 O3 MFL 401 AAA 1 
HETATM 24 C C11 MFL . . . C 2 -7.837 2.533 22.773 1 28.14 0 C11 MFL 401 AAA 1 
HETATM 25 C C12 MFL . . . C 2 -7.926 1.163 23.43 1 26.45 0 C12 MFL 401 AAA 1 
HETATM 26 C C14 MFL . . . C 2 -7.39 4.892 23.483 1 26.64 0 C14 MFL 401 AAA 1 
HETATM 27 C C16 MFL . . . C 2 -7.965 6.038 22.719 1 26.25 0 C16 MFL 401 AAA 1 
HETATM 28 O O4 MFL . . . C 2 -8.96 0.509 23.398 1 25.56 0 O4 MFL 401 AAA 1 
HETATM 29 C C18 MFL . . . C 2 -6.579 0.073 26.269 1 31.94 0 C18 MFL 401 AAA 1 
HETATM 30 C C19 MFL . . . C 2 -5.563 -1.357 24.379 1 30.24 0 C19 MFL 401 AAA 1 
HETATM 31 N N4 MFL . . . C 2 -5.646 -3.527 21.453 1 32.28 0 N4 MFL 401 AAA 1 
HETATM 32 C C23 MFL . . . C 2 -5.014 -2.781 22.357 1 31.81 0 C23 MFL 401 AAA 1 
HETATM 33 O O5 MFL . . . C 2 -3.856 -2.363 22.272 1 32.13 0 O5 MFL 401 AAA 1 
HETATM 34 O O6 MFL . . . C 2 -7.271 1.313 26.38 1 29.99 0 O6 MFL 401 AAA 1 
HETATM 35 N N5 MFL . . . C 2 -8.056 -0.469 28.109 1 35.06 0 N5 MFL 401 AAA 1 
HETATM 36 C C25 MFL . . . C 2 -8.766 -1.342 29.027 1 38.66 0 C25 MFL 401 AAA 1 
HETATM 37 O O7 MFL . . . C 2 -6.553 -2 27.44 1 36.64 0 O7 MFL 401 AAA 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#