data_8AIZ # _model_server_result.job_id -lmXMuaGzAfY4D0oRKglzA _model_server_result.datetime_utc '2025-02-23 12:53:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8AIZ # _exptl.entry_id 8AIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.08 _cell.angle_gamma 90 _cell.entry_id 8AIZ _cell.length_a 113.8 _cell.length_b 52.8 _cell.length_c 45.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id MIJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id MIJ _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.824 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H35 N5 O6' _chem_comp.formula_weight 537.607 _chem_comp.id MIJ _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 MIJ sing 237 n n C12 C11 MIJ doub 238 n n C13 C9 MIJ doub 239 n n C11 N2 MIJ sing 240 n n C1 C6 MIJ doub 241 n y C1 C2 MIJ sing 242 n y C6 C5 MIJ sing 243 n y O1 C8 MIJ doub 244 n n C9 N1 MIJ sing 245 n n C9 C10 MIJ sing 246 n n C22 C20 MIJ sing 247 n n C22 C21 MIJ sing 248 n n C2 C3 MIJ doub 249 n y C20 C19 MIJ sing 250 n n C20 C21 MIJ sing 251 n n N2 C10 MIJ sing 252 n n N2 C14 MIJ sing 253 n n C8 N1 MIJ sing 254 n n C8 C7 MIJ sing 255 n n C5 C7 MIJ sing 256 n n C5 C4 MIJ doub 257 n y C19 C14 MIJ sing 258 n n O3 C15 MIJ doub 259 n n C10 O2 MIJ doub 260 n n C14 C15 MIJ sing 261 n n C3 C4 MIJ sing 262 n y C15 N3 MIJ sing 263 n n C28 N4 MIJ sing 264 n n N4 C18 MIJ sing 265 n n O4 C17 MIJ sing 266 n n N3 C16 MIJ sing 267 n n C25 C26 MIJ sing 268 n n C25 C24 MIJ sing 269 n n C18 C17 MIJ sing 270 n n C18 O5 MIJ doub 271 n n C16 C17 MIJ sing 272 n n C16 C23 MIJ sing 273 n n C26 N5 MIJ sing 274 n n C24 C23 MIJ sing 275 n n C24 C27 MIJ sing 276 n n N5 C27 MIJ sing 277 n n C27 O6 MIJ doub 278 n n N1 H1 MIJ sing 279 n n N3 H2 MIJ sing 280 n n C4 H3 MIJ sing 281 n n C6 H4 MIJ sing 282 n n C7 H5 MIJ sing 283 n n C7 H6 MIJ sing 284 n n C13 H7 MIJ sing 285 n n C17 H8 MIJ sing 286 n n C20 H9 MIJ sing 287 n n C21 H10 MIJ sing 288 n n C21 H11 MIJ sing 289 n n C22 H12 MIJ sing 290 n n C22 H13 MIJ sing 291 n n C24 H14 MIJ sing 292 n n C26 H15 MIJ sing 293 n n C26 H16 MIJ sing 294 n n C28 H17 MIJ sing 295 n n C28 H18 MIJ sing 296 n n C28 H19 MIJ sing 297 n n C1 H20 MIJ sing 298 n n C2 H21 MIJ sing 299 n n C3 H22 MIJ sing 300 n n C11 H23 MIJ sing 301 n n C12 H24 MIJ sing 302 n n C14 H25 MIJ sing 303 n n C16 H26 MIJ sing 304 n n N4 H27 MIJ sing 305 n n C19 H28 MIJ sing 306 n n C19 H29 MIJ sing 307 n n C23 H30 MIJ sing 308 n n C23 H31 MIJ sing 309 n n O4 H32 MIJ sing 310 n n C25 H33 MIJ sing 311 n n C25 H34 MIJ sing 312 n n N5 H35 MIJ sing 313 n n # _atom_sites.entry_id 8AIZ _atom_sites.fract_transf_matrix[1][1] 0.008787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MIJ AAA 1 401 401 MIJ LIG . C 3 CL AAA 1 402 1 CL CL . D 4 HOH AAA 1 501 25 HOH HOH . D 4 HOH AAA 2 502 43 HOH HOH . D 4 HOH AAA 3 503 26 HOH HOH . D 4 HOH AAA 4 504 14 HOH HOH . D 4 HOH AAA 5 505 50 HOH HOH . D 4 HOH AAA 6 506 9 HOH HOH . D 4 HOH AAA 7 507 54 HOH HOH . D 4 HOH AAA 8 508 58 HOH HOH . D 4 HOH AAA 9 509 69 HOH HOH . D 4 HOH AAA 10 510 40 HOH HOH . D 4 HOH AAA 11 511 19 HOH HOH . D 4 HOH AAA 12 512 65 HOH HOH . D 4 HOH AAA 13 513 2 HOH HOH . D 4 HOH AAA 14 514 38 HOH HOH . D 4 HOH AAA 15 515 35 HOH HOH . D 4 HOH AAA 16 516 13 HOH HOH . D 4 HOH AAA 17 517 7 HOH HOH . D 4 HOH AAA 18 518 18 HOH HOH . D 4 HOH AAA 19 519 49 HOH HOH . D 4 HOH AAA 20 520 34 HOH HOH . D 4 HOH AAA 21 521 36 HOH HOH . D 4 HOH AAA 22 522 12 HOH HOH . D 4 HOH AAA 23 523 48 HOH HOH . D 4 HOH AAA 24 524 24 HOH HOH . D 4 HOH AAA 25 525 41 HOH HOH . D 4 HOH AAA 26 526 21 HOH HOH . D 4 HOH AAA 27 527 5 HOH HOH . D 4 HOH AAA 28 528 31 HOH HOH . D 4 HOH AAA 29 529 20 HOH HOH . D 4 HOH AAA 30 530 16 HOH HOH . D 4 HOH AAA 31 531 37 HOH HOH . D 4 HOH AAA 32 532 68 HOH HOH . D 4 HOH AAA 33 533 62 HOH HOH . D 4 HOH AAA 34 534 46 HOH HOH . D 4 HOH AAA 35 535 29 HOH HOH . D 4 HOH AAA 36 536 3 HOH HOH . D 4 HOH AAA 37 537 71 HOH HOH . D 4 HOH AAA 38 538 39 HOH HOH . D 4 HOH AAA 39 539 33 HOH HOH . D 4 HOH AAA 40 540 66 HOH HOH . D 4 HOH AAA 41 541 70 HOH HOH . D 4 HOH AAA 42 542 4 HOH HOH . D 4 HOH AAA 43 543 42 HOH HOH . D 4 HOH AAA 44 544 74 HOH HOH . D 4 HOH AAA 45 545 28 HOH HOH . D 4 HOH AAA 46 546 1 HOH HOH . D 4 HOH AAA 47 547 57 HOH HOH . D 4 HOH AAA 48 548 15 HOH HOH . D 4 HOH AAA 49 549 56 HOH HOH . D 4 HOH AAA 50 550 72 HOH HOH . D 4 HOH AAA 51 551 23 HOH HOH . D 4 HOH AAA 52 552 22 HOH HOH . D 4 HOH AAA 53 553 30 HOH HOH . D 4 HOH AAA 54 554 27 HOH HOH . D 4 HOH AAA 55 555 51 HOH HOH . D 4 HOH AAA 56 556 60 HOH HOH . D 4 HOH AAA 57 557 45 HOH HOH . D 4 HOH AAA 58 558 52 HOH HOH . D 4 HOH AAA 59 559 10 HOH HOH . D 4 HOH AAA 60 560 75 HOH HOH . D 4 HOH AAA 61 561 11 HOH HOH . D 4 HOH AAA 62 562 73 HOH HOH . D 4 HOH AAA 63 563 63 HOH HOH . D 4 HOH AAA 64 564 55 HOH HOH . D 4 HOH AAA 65 565 47 HOH HOH . D 4 HOH AAA 66 566 64 HOH HOH . D 4 HOH AAA 67 567 53 HOH HOH . D 4 HOH AAA 68 568 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MIJ . . . B 2 -15.748 -21.598 -0.513 1 47.17 0 N1 MIJ 401 AAA 1 HETATM 2 N N3 MIJ . . . B 2 -14.022 -27.368 1.385 1 31.48 0 N3 MIJ 401 AAA 1 HETATM 3 C C4 MIJ . . . B 2 -14.343 -17.527 0.148 1 58 0 C4 MIJ 401 AAA 1 HETATM 4 C C5 MIJ . . . B 2 -15.405 -17.898 -0.671 1 54.38 0 C5 MIJ 401 AAA 1 HETATM 5 C C6 MIJ . . . B 2 -15.803 -17.026 -1.675 1 55.72 0 C6 MIJ 401 AAA 1 HETATM 6 C C7 MIJ . . . B 2 -16.103 -19.221 -0.478 1 56.57 0 C7 MIJ 401 AAA 1 HETATM 7 C C8 MIJ . . . B 2 -15.238 -20.404 -0.877 1 60.35 0 C8 MIJ 401 AAA 1 HETATM 8 C C10 MIJ . . . B 2 -15.73 -23.953 -0.341 1 34.29 0 C10 MIJ 401 AAA 1 HETATM 9 C C13 MIJ . . . B 2 -15.678 -22.987 -2.573 1 38.89 0 C13 MIJ 401 AAA 1 HETATM 10 C C15 MIJ . . . B 2 -14.28 -26.78 0.215 1 33.93 0 C15 MIJ 401 AAA 1 HETATM 11 C C17 MIJ . . . B 2 -12.965 -29.492 1.806 1 36.01 0 C17 MIJ 401 AAA 1 HETATM 12 C C20 MIJ . . . B 2 -17.915 -27.105 -0.975 1 35.24 0 C20 MIJ 401 AAA 1 HETATM 13 C C21 MIJ . . . B 2 -18.961 -27.158 0.086 1 38.38 0 C21 MIJ 401 AAA 1 HETATM 14 C C22 MIJ . . . B 2 -19.015 -28.115 -1.062 1 37.81 0 C22 MIJ 401 AAA 1 HETATM 15 C C24 MIJ . . . B 2 -11.728 -25.857 2.608 1 35.96 0 C24 MIJ 401 AAA 1 HETATM 16 C C26 MIJ . . . B 2 -9.788 -24.469 2.067 1 37.93 0 C26 MIJ 401 AAA 1 HETATM 17 C C28 MIJ . . . B 2 -10.6 -32.09 0.433 1 36.08 0 C28 MIJ 401 AAA 1 HETATM 18 C C1 MIJ . . . B 2 -15.152 -15.813 -1.858 1 58.25 0 C1 MIJ 401 AAA 1 HETATM 19 C C2 MIJ . . . B 2 -14.1 -15.456 -1.037 1 59.52 0 C2 MIJ 401 AAA 1 HETATM 20 C C3 MIJ . . . B 2 -13.69 -16.314 -0.04 1 57.62 0 C3 MIJ 401 AAA 1 HETATM 21 O O1 MIJ . . . B 2 -14.169 -20.286 -1.469 1 65.64 0 O1 MIJ 401 AAA 1 HETATM 22 C C9 MIJ . . . B 2 -15.697 -22.843 -1.185 1 41.93 0 C9 MIJ 401 AAA 1 HETATM 23 N N2 MIJ . . . B 2 -15.717 -25.194 -0.951 1 35.23 0 N2 MIJ 401 AAA 1 HETATM 24 C C11 MIJ . . . B 2 -15.635 -25.336 -2.311 1 34.59 0 C11 MIJ 401 AAA 1 HETATM 25 C C12 MIJ . . . B 2 -15.632 -24.263 -3.123 1 37.6 0 C12 MIJ 401 AAA 1 HETATM 26 O O2 MIJ . . . B 2 -15.761 -23.91 0.879 1 35.36 0 O2 MIJ 401 AAA 1 HETATM 27 C C14 MIJ . . . B 2 -15.71 -26.378 -0.081 1 31.2 0 C14 MIJ 401 AAA 1 HETATM 28 C C16 MIJ . . . B 2 -12.734 -27.97 1.7 1 32.99 0 C16 MIJ 401 AAA 1 HETATM 29 C C18 MIJ . . . B 2 -11.695 -30.31 1.675 1 33.86 0 C18 MIJ 401 AAA 1 HETATM 30 N N4 MIJ . . . B 2 -11.652 -31.112 0.625 1 34.66 0 N4 MIJ 401 AAA 1 HETATM 31 C C19 MIJ . . . B 2 -16.511 -27.534 -0.667 1 34.52 0 C19 MIJ 401 AAA 1 HETATM 32 O O3 MIJ . . . B 2 -13.41 -26.572 -0.623 1 32.05 0 O3 MIJ 401 AAA 1 HETATM 33 C C23 MIJ . . . B 2 -12.113 -27.305 2.926 1 32.76 0 C23 MIJ 401 AAA 1 HETATM 34 O O4 MIJ . . . B 2 -13.855 -29.873 0.757 1 33.57 0 O4 MIJ 401 AAA 1 HETATM 35 O O5 MIJ . . . B 2 -10.793 -30.208 2.514 1 31.24 0 O5 MIJ 401 AAA 1 HETATM 36 C C25 MIJ . . . B 2 -10.626 -25.669 1.568 1 38.87 0 C25 MIJ 401 AAA 1 HETATM 37 N N5 MIJ . . . B 2 -10.186 -24.323 3.461 1 36.36 0 N5 MIJ 401 AAA 1 HETATM 38 C C27 MIJ . . . B 2 -11.229 -25.072 3.81 1 39.42 0 C27 MIJ 401 AAA 1 HETATM 39 O O6 MIJ . . . B 2 -11.73 -25.115 4.932 1 37.19 0 O6 MIJ 401 AAA 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #