data_8AJ1 # _model_server_result.job_id ir_WaAiIwRzeYhHVF3TkPA _model_server_result.datetime_utc '2024-10-18 18:15:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8AJ1 # _exptl.entry_id 8AJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.595 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3S)-3-[[(2S)-3-cyclopropyl-2-[2-oxidanylidene-3-(phenylcarbamoylamino)pyridin-1-yl]propanoyl]amino]-N-methyl-2-oxidanyl-4-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.806 _cell.angle_gamma 90 _cell.entry_id 8AJ1 _cell.length_a 113.234 _cell.length_b 52.955 _cell.length_c 45.707 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -10.130985 0 44.570091 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C20 _struct_conn.ptnr2_label_comp_id A1IMU _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1IMU _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.784 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H34 N6 O6' _chem_comp.formula_weight 538.595 _chem_comp.id A1IMU _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3S)-3-[[(2S)-3-cyclopropyl-2-[2-oxidanylidene-3-(phenylcarbamoylamino)pyridin-1-yl]propanoyl]amino]-N-methyl-2-oxidanyl-4-[(3S)-2-oxidanylidenepyrrolidin-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1IMU doub 1 n y C2 C3 A1IMU sing 2 n y C3 C4 A1IMU doub 3 n y C4 C5 A1IMU sing 4 n y C5 C6 A1IMU doub 5 n y C1 C6 A1IMU sing 6 n y C5 N1 A1IMU sing 7 n n N1 C7 A1IMU sing 8 n n C7 N2 A1IMU sing 9 n n N2 C8 A1IMU sing 10 n n C8 C9 A1IMU sing 11 n n C9 N3 A1IMU sing 12 n n N3 C10 A1IMU sing 13 n n C10 C11 A1IMU doub 14 n n C11 C12 A1IMU sing 15 n n C8 C12 A1IMU doub 16 n n C7 O1 A1IMU doub 17 n n C9 O2 A1IMU doub 18 n n N3 C13 A1IMU sing 19 n n C13 C14 A1IMU sing 20 n n C14 N4 A1IMU sing 21 n n N4 C15 A1IMU sing 22 n n C13 C16 A1IMU sing 23 n n C16 C17 A1IMU sing 24 n n C17 C18 A1IMU sing 25 n n C18 C19 A1IMU sing 26 n n C17 C19 A1IMU sing 27 n n C14 O3 A1IMU doub 28 n n C15 C20 A1IMU sing 29 n n C20 C21 A1IMU sing 30 n n C15 C22 A1IMU sing 31 n n C22 C23 A1IMU sing 32 n n C23 C24 A1IMU sing 33 n n C24 C25 A1IMU sing 34 n n C25 N5 A1IMU sing 35 n n N5 C26 A1IMU sing 36 n n C23 C26 A1IMU sing 37 n n C26 O4 A1IMU doub 38 n n C21 N6 A1IMU sing 39 n n N6 C27 A1IMU sing 40 n n C20 O5 A1IMU sing 41 n n C21 O6 A1IMU doub 42 n n N1 H6 A1IMU sing 43 n n C4 H4 A1IMU sing 44 n n C6 H5 A1IMU sing 45 n n C10 H8 A1IMU sing 46 n n C13 H11 A1IMU sing 47 n n C15 H13 A1IMU sing 48 n n C17 H16 A1IMU sing 49 n n C20 H21 A1IMU sing 50 n n C22 H22 A1IMU sing 51 n n C22 H23 A1IMU sing 52 n n C24 H26 A1IMU sing 53 n n C24 H25 A1IMU sing 54 n n C1 H1 A1IMU sing 55 n n C2 H2 A1IMU sing 56 n n C3 H3 A1IMU sing 57 n n N2 H7 A1IMU sing 58 n n C11 H9 A1IMU sing 59 n n C12 H10 A1IMU sing 60 n n N4 H12 A1IMU sing 61 n n C16 H14 A1IMU sing 62 n n C16 H15 A1IMU sing 63 n n C18 H17 A1IMU sing 64 n n C18 H18 A1IMU sing 65 n n C19 H19 A1IMU sing 66 n n C19 H20 A1IMU sing 67 n n C23 H24 A1IMU sing 68 n n C25 H28 A1IMU sing 69 n n C25 H27 A1IMU sing 70 n n N5 H29 A1IMU sing 71 n n N6 H30 A1IMU sing 72 n n C27 H31 A1IMU sing 73 n n C27 H32 A1IMU sing 74 n n C27 H33 A1IMU sing 75 n n O5 H34 A1IMU sing 76 n n # _atom_sites.entry_id 8AJ1 _atom_sites.fract_transf_matrix[1][1] 0.008831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1IMU A 1 401 401 A1IMU LIG . C 3 HOH A 1 501 206 HOH HOH . C 3 HOH A 2 502 120 HOH HOH . C 3 HOH A 3 503 55 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 37 HOH HOH . C 3 HOH A 6 506 32 HOH HOH . C 3 HOH A 7 507 157 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 7 HOH HOH . C 3 HOH A 10 510 210 HOH HOH . C 3 HOH A 11 511 126 HOH HOH . C 3 HOH A 12 512 207 HOH HOH . C 3 HOH A 13 513 209 HOH HOH . C 3 HOH A 14 514 26 HOH HOH . C 3 HOH A 15 515 205 HOH HOH . C 3 HOH A 16 516 104 HOH HOH . C 3 HOH A 17 517 94 HOH HOH . C 3 HOH A 18 518 62 HOH HOH . C 3 HOH A 19 519 102 HOH HOH . C 3 HOH A 20 520 203 HOH HOH . C 3 HOH A 21 521 208 HOH HOH . C 3 HOH A 22 522 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1IMU . . . B 2 -15.302 7.059 -0.598 1 81.72 0 N1 A1IMU 401 A 1 HETATM 2 N N3 A1IMU . . . B 2 -15.37 1.159 -0.874 1 72.8 0 N3 A1IMU 401 A 1 HETATM 3 C C4 A1IMU . . . B 2 -15.26 9.342 -1.453 1 77.86 0 C4 A1IMU 401 A 1 HETATM 4 C C5 A1IMU . . . B 2 -14.804 8.385 -0.555 1 76.77 0 C5 A1IMU 401 A 1 HETATM 5 C C6 A1IMU . . . B 2 -13.892 8.761 0.423 1 66.26 0 C6 A1IMU 401 A 1 HETATM 6 C C7 A1IMU . . . B 2 -14.63 5.948 -1.057 1 82.16 0 C7 A1IMU 401 A 1 HETATM 7 C C8 A1IMU . . . B 2 -15.181 3.526 -1.059 1 75.7 0 C8 A1IMU 401 A 1 HETATM 8 C C10 A1IMU . . . B 2 -15.578 1.065 -2.221 1 67.34 0 C10 A1IMU 401 A 1 HETATM 9 C C13 A1IMU . . . B 2 -15.337 -0.059 -0.043 1 68.23 0 C13 A1IMU 401 A 1 HETATM 10 C C15 A1IMU . . . B 2 -12.37 -1.646 1.725 1 68.03 0 C15 A1IMU 401 A 1 HETATM 11 C C17 A1IMU . . . B 2 -17.669 -1.022 -0.182 1 73.81 0 C17 A1IMU 401 A 1 HETATM 12 C C20 A1IMU . . . B 2 -12.766 -3.12 1.89 1 65.08 0 C20 A1IMU 401 A 1 HETATM 13 C C21 A1IMU . . . B 2 -11.578 -4.072 1.879 1 69.81 0 C21 A1IMU 401 A 1 HETATM 14 C C22 A1IMU . . . B 2 -11.667 -1.058 2.944 1 62.07 0 C22 A1IMU 401 A 1 HETATM 15 C C24 A1IMU . . . B 2 -10.484 0.874 1.675 1 65.56 0 C24 A1IMU 401 A 1 HETATM 16 C C26 A1IMU . . . B 2 -10.978 1.131 4.017 1 67.28 0 C26 A1IMU 401 A 1 HETATM 17 C C1 A1IMU . . . B 2 -13.423 10.065 0.476 1 64.7 0 C1 A1IMU 401 A 1 HETATM 18 C C2 A1IMU . . . B 2 -13.854 11.003 -0.435 1 68.33 0 C2 A1IMU 401 A 1 HETATM 19 C C3 A1IMU . . . B 2 -14.762 10.639 -1.405 1 72.76 0 C3 A1IMU 401 A 1 HETATM 20 N N2 A1IMU . . . B 2 -15.011 4.784 -0.444 1 73.39 0 N2 A1IMU 401 A 1 HETATM 21 C C9 A1IMU . . . B 2 -15.156 2.393 -0.24 1 76.57 0 C9 A1IMU 401 A 1 HETATM 22 C C11 A1IMU . . . B 2 -15.623 2.162 -2.999 1 67.66 0 C11 A1IMU 401 A 1 HETATM 23 C C12 A1IMU . . . B 2 -15.431 3.418 -2.432 1 70.69 0 C12 A1IMU 401 A 1 HETATM 24 O O1 A1IMU . . . B 2 -13.793 5.988 -1.949 1 94.63 0 O1 A1IMU 401 A 1 HETATM 25 O O2 A1IMU . . . B 2 -14.952 2.399 0.967 1 77.28 0 O2 A1IMU 401 A 1 HETATM 26 C C14 A1IMU . . . B 2 -13.91 -0.537 0.147 1 67.42 0 C14 A1IMU 401 A 1 HETATM 27 N N4 A1IMU . . . B 2 -13.548 -0.852 1.395 1 69.18 0 N4 A1IMU 401 A 1 HETATM 28 C C16 A1IMU . . . B 2 -16.223 -1.193 -0.568 1 71.51 0 C16 A1IMU 401 A 1 HETATM 29 C C18 A1IMU . . . B 2 -18.71 -0.745 -1.219 1 77.4 0 C18 A1IMU 401 A 1 HETATM 30 C C19 A1IMU . . . B 2 -18.677 -2.07 -0.537 1 74.66 0 C19 A1IMU 401 A 1 HETATM 31 O O3 A1IMU . . . B 2 -13.166 -0.638 -0.823 1 73.8 0 O3 A1IMU 401 A 1 HETATM 32 C C23 A1IMU . . . B 2 -11.465 0.441 2.759 1 67.42 0 C23 A1IMU 401 A 1 HETATM 33 C C25 A1IMU . . . B 2 -9.374 1.644 2.395 1 66.94 0 C25 A1IMU 401 A 1 HETATM 34 N N5 A1IMU . . . B 2 -9.828 1.74 3.777 1 66.64 0 N5 A1IMU 401 A 1 HETATM 35 O O4 A1IMU . . . B 2 -11.571 1.116 5.093 1 67.62 0 O4 A1IMU 401 A 1 HETATM 36 N N6 A1IMU . . . B 2 -11.52 -4.933 0.877 1 72.57 0 N6 A1IMU 401 A 1 HETATM 37 C C27 A1IMU . . . B 2 -10.434 -5.88 0.703 1 74.45 0 C27 A1IMU 401 A 1 HETATM 38 O O5 A1IMU . . . B 2 -13.686 -3.461 0.86 1 57.9 0 O5 A1IMU 401 A 1 HETATM 39 O O6 A1IMU . . . B 2 -10.761 -4.023 2.798 1 73.15 0 O6 A1IMU 401 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #