data_8AJ3 # _model_server_result.job_id 1HgEpYOoIL4sg8GIYiwrng _model_server_result.datetime_utc '2024-11-28 04:29:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8AJ3 # _exptl.entry_id 8AJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.145 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene]" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AJ3 _cell.length_a 76.89 _cell.length_b 76.89 _cell.length_c 38.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 A OD1 ASN 65 A ASN 65 1_555 C V01 H1W . A H1W 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 B NA NA . A NA 201 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc7 B NA NA . A NA 201 1_555 G O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C12 H10 O8 V' _chem_comp.formula_weight 333.145 _chem_comp.id MKO _chem_comp.mon_nstd_flag . _chem_comp.name "8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 MKO doub 280 n y C13 O14 MKO sing 281 n y C12 C11 MKO sing 282 n y O14 C15 MKO doub 283 n y C11 O11 MKO sing 284 n n C11 C10 MKO doub 285 n y C15 C10 MKO sing 286 n y C15 C16 MKO sing 287 n n C6 C5 MKO doub 288 n y C6 O7 MKO sing 289 n y O11 V1 MKO sing 290 n n C5 C4 MKO sing 291 n y C10 O10 MKO sing 292 n n O7 C8 MKO doub 293 n y C4 O4 MKO sing 294 n n C4 C3 MKO doub 295 n y O4 V1 MKO sing 296 n n C8 C3 MKO sing 297 n y C8 C9 MKO sing 298 n n C3 O3 MKO sing 299 n n O10 V1 MKO sing 300 n n V1 O3 MKO sing 301 n n V1 O2 MKO sing 302 n n V1 O1 MKO sing 303 n n C5 H2 MKO sing 304 n n C6 H3 MKO sing 305 n n C9 H5 MKO sing 306 n n C9 H6 MKO sing 307 n n C9 H7 MKO sing 308 n n C12 H8 MKO sing 309 n n C13 H9 MKO sing 310 n n C16 H10 MKO sing 311 n n C16 H11 MKO sing 312 n n C16 H12 MKO sing 313 n n # _atom_sites.entry_id 8AJ3 _atom_sites.fract_transf_matrix[1][1] 0.013006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 131 NA NA . C 3 H1W A 1 202 1 H1W VO6 . D 4 EPE A 1 203 1 EPE EPE . E 5 MKO A 1 204 1 MKO MAL . F 6 MNW A 1 205 2 MNW M9L . G 7 HOH A 1 301 40 HOH HOH . G 7 HOH A 2 302 127 HOH HOH . G 7 HOH A 3 303 81 HOH HOH . G 7 HOH A 4 304 90 HOH HOH . G 7 HOH A 5 305 57 HOH HOH . G 7 HOH A 6 306 56 HOH HOH . G 7 HOH A 7 307 16 HOH HOH . G 7 HOH A 8 308 43 HOH HOH . G 7 HOH A 9 309 169 HOH HOH . G 7 HOH A 10 310 154 HOH HOH . G 7 HOH A 11 311 178 HOH HOH . G 7 HOH A 12 312 26 HOH HOH . G 7 HOH A 13 313 83 HOH HOH . G 7 HOH A 14 314 138 HOH HOH . G 7 HOH A 15 315 93 HOH HOH . G 7 HOH A 16 316 12 HOH HOH . G 7 HOH A 17 317 33 HOH HOH . G 7 HOH A 18 318 72 HOH HOH . G 7 HOH A 19 319 41 HOH HOH . G 7 HOH A 20 320 19 HOH HOH . G 7 HOH A 21 321 55 HOH HOH . G 7 HOH A 22 322 139 HOH HOH . G 7 HOH A 23 323 37 HOH HOH . G 7 HOH A 24 324 2 HOH HOH . G 7 HOH A 25 325 155 HOH HOH . G 7 HOH A 26 326 174 HOH HOH . G 7 HOH A 27 327 132 HOH HOH . G 7 HOH A 28 328 152 HOH HOH . G 7 HOH A 29 329 32 HOH HOH . G 7 HOH A 30 330 3 HOH HOH . G 7 HOH A 31 331 112 HOH HOH . G 7 HOH A 32 332 118 HOH HOH . G 7 HOH A 33 333 15 HOH HOH . G 7 HOH A 34 334 131 HOH HOH . G 7 HOH A 35 335 47 HOH HOH . G 7 HOH A 36 336 30 HOH HOH . G 7 HOH A 37 337 54 HOH HOH . G 7 HOH A 38 338 34 HOH HOH . G 7 HOH A 39 339 46 HOH HOH . G 7 HOH A 40 340 68 HOH HOH . G 7 HOH A 41 341 28 HOH HOH . G 7 HOH A 42 342 49 HOH HOH . G 7 HOH A 43 343 21 HOH HOH . G 7 HOH A 44 344 27 HOH HOH . G 7 HOH A 45 345 45 HOH HOH . G 7 HOH A 46 346 17 HOH HOH . G 7 HOH A 47 347 77 HOH HOH . G 7 HOH A 48 348 120 HOH HOH . G 7 HOH A 49 349 80 HOH HOH . G 7 HOH A 50 350 8 HOH HOH . G 7 HOH A 51 351 44 HOH HOH . G 7 HOH A 52 352 79 HOH HOH . G 7 HOH A 53 353 58 HOH HOH . G 7 HOH A 54 354 71 HOH HOH . G 7 HOH A 55 355 36 HOH HOH . G 7 HOH A 56 356 98 HOH HOH . G 7 HOH A 57 357 109 HOH HOH . G 7 HOH A 58 358 78 HOH HOH . G 7 HOH A 59 359 141 HOH HOH . G 7 HOH A 60 360 64 HOH HOH . G 7 HOH A 61 361 183 HOH HOH . G 7 HOH A 62 362 53 HOH HOH . G 7 HOH A 63 363 182 HOH HOH . G 7 HOH A 64 364 7 HOH HOH . G 7 HOH A 65 365 11 HOH HOH . G 7 HOH A 66 366 52 HOH HOH . G 7 HOH A 67 367 48 HOH HOH . G 7 HOH A 68 368 105 HOH HOH . G 7 HOH A 69 369 69 HOH HOH . G 7 HOH A 70 370 134 HOH HOH . G 7 HOH A 71 371 121 HOH HOH . G 7 HOH A 72 372 73 HOH HOH . G 7 HOH A 73 373 82 HOH HOH . G 7 HOH A 74 374 137 HOH HOH . G 7 HOH A 75 375 10 HOH HOH . G 7 HOH A 76 376 123 HOH HOH . G 7 HOH A 77 377 29 HOH HOH . G 7 HOH A 78 378 173 HOH HOH . G 7 HOH A 79 379 51 HOH HOH . G 7 HOH A 80 380 22 HOH HOH . G 7 HOH A 81 381 166 HOH HOH . G 7 HOH A 82 382 153 HOH HOH . G 7 HOH A 83 383 31 HOH HOH . G 7 HOH A 84 384 75 HOH HOH . G 7 HOH A 85 385 42 HOH HOH . G 7 HOH A 86 386 66 HOH HOH . G 7 HOH A 87 387 39 HOH HOH . G 7 HOH A 88 388 148 HOH HOH . G 7 HOH A 89 389 140 HOH HOH . G 7 HOH A 90 390 38 HOH HOH . G 7 HOH A 91 391 165 HOH HOH . G 7 HOH A 92 392 96 HOH HOH . G 7 HOH A 93 393 50 HOH HOH . G 7 HOH A 94 394 124 HOH HOH . G 7 HOH A 95 395 110 HOH HOH . G 7 HOH A 96 396 168 HOH HOH . G 7 HOH A 97 397 171 HOH HOH . G 7 HOH A 98 398 25 HOH HOH . G 7 HOH A 99 399 151 HOH HOH . G 7 HOH A 100 400 177 HOH HOH . G 7 HOH A 101 401 23 HOH HOH . G 7 HOH A 102 402 14 HOH HOH . G 7 HOH A 103 403 164 HOH HOH . G 7 HOH A 104 404 85 HOH HOH . G 7 HOH A 105 405 91 HOH HOH . G 7 HOH A 106 406 117 HOH HOH . G 7 HOH A 107 407 63 HOH HOH . G 7 HOH A 108 408 161 HOH HOH . G 7 HOH A 109 409 104 HOH HOH . G 7 HOH A 110 410 62 HOH HOH . G 7 HOH A 111 411 146 HOH HOH . G 7 HOH A 112 412 108 HOH HOH . G 7 HOH A 113 413 125 HOH HOH . G 7 HOH A 114 414 149 HOH HOH . G 7 HOH A 115 415 20 HOH HOH . G 7 HOH A 116 416 35 HOH HOH . G 7 HOH A 117 417 61 HOH HOH . G 7 HOH A 118 418 67 HOH HOH . G 7 HOH A 119 419 100 HOH HOH . G 7 HOH A 120 420 13 HOH HOH . G 7 HOH A 121 421 167 HOH HOH . G 7 HOH A 122 422 156 HOH HOH . G 7 HOH A 123 423 175 HOH HOH . G 7 HOH A 124 424 160 HOH HOH . G 7 HOH A 125 425 99 HOH HOH . G 7 HOH A 126 426 1 HOH HOH . G 7 HOH A 127 427 157 HOH HOH . G 7 HOH A 128 428 86 HOH HOH . G 7 HOH A 129 429 135 HOH HOH . G 7 HOH A 130 430 97 HOH HOH . G 7 HOH A 131 431 106 HOH HOH . G 7 HOH A 132 432 76 HOH HOH . G 7 HOH A 133 433 74 HOH HOH . G 7 HOH A 134 434 136 HOH HOH . G 7 HOH A 135 435 70 HOH HOH . G 7 HOH A 136 436 187 HOH HOH . G 7 HOH A 137 437 143 HOH HOH . G 7 HOH A 138 438 158 HOH HOH . G 7 HOH A 139 439 65 HOH HOH . G 7 HOH A 140 440 119 HOH HOH . G 7 HOH A 141 441 111 HOH HOH . G 7 HOH A 142 442 60 HOH HOH . G 7 HOH A 143 443 84 HOH HOH . G 7 HOH A 144 444 59 HOH HOH . G 7 HOH A 145 445 114 HOH HOH . G 7 HOH A 146 446 101 HOH HOH . G 7 HOH A 147 447 179 HOH HOH . G 7 HOH A 148 448 24 HOH HOH . G 7 HOH A 149 449 107 HOH HOH . G 7 HOH A 150 450 103 HOH HOH . G 7 HOH A 151 451 163 HOH HOH . G 7 HOH A 152 452 162 HOH HOH . G 7 HOH A 153 453 115 HOH HOH . G 7 HOH A 154 454 102 HOH HOH . G 7 HOH A 155 455 95 HOH HOH . G 7 HOH A 156 456 159 HOH HOH . G 7 HOH A 157 457 144 HOH HOH . G 7 HOH A 158 458 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MKO . . . E 5 6.559 -16.831 -15.787 0.7 12.69 0 O1 MKO 204 A 1 HETATM 2 C C3 MKO . . . E 5 3.968 -16.173 -17.923 0.7 18.76 0 C3 MKO 204 A 1 HETATM 3 C C4 MKO . . . E 5 4.974 -15.364 -18.403 0.7 19.21 0 C4 MKO 204 A 1 HETATM 4 C C5 MKO . . . E 5 4.625 -14.104 -19.017 0.7 21.75 0 C5 MKO 204 A 1 HETATM 5 C C6 MKO . . . E 5 3.328 -13.794 -19.158 0.7 23.73 0 C6 MKO 204 A 1 HETATM 6 O O2 MKO . . . E 5 6.244 -19.221 -16.546 0.7 15.5 0 O2 MKO 204 A 1 HETATM 7 O O3 MKO . . . E 5 4.354 -17.127 -17.152 0.7 18.03 0 O3 MKO 204 A 1 HETATM 8 O O4 MKO . . . E 5 6.151 -15.744 -18.156 0.7 20.12 0 O4 MKO 204 A 1 HETATM 9 V V1 MKO . . . E 5 6.234 -17.554 -17.318 0.7 15 0 V1 MKO 204 A 1 HETATM 10 O O7 MKO . . . E 5 2.354 -14.621 -18.745 0.7 26.15 0 O7 MKO 204 A 1 HETATM 11 C C8 MKO . . . E 5 2.642 -15.829 -18.149 0.7 21.22 0 C8 MKO 204 A 1 HETATM 12 C C9 MKO . . . E 5 1.443 -16.624 -17.773 0.7 18.53 0 C9 MKO 204 A 1 HETATM 13 O O10 MKO . . . E 5 8.143 -17.71 -17.693 0.7 15.69 0 O10 MKO 204 A 1 HETATM 14 O O11 MKO . . . E 5 5.907 -18.36 -19.047 0.7 18.09 0 O11 MKO 204 A 1 HETATM 15 C C10 MKO . . . E 5 8.385 -18.388 -18.913 0.7 19.21 0 C10 MKO 204 A 1 HETATM 16 C C11 MKO . . . E 5 7.118 -18.728 -19.685 0.7 20.58 0 C11 MKO 204 A 1 HETATM 17 C C12 MKO . . . E 5 7.229 -19.202 -21.008 0.7 21.51 0 C12 MKO 204 A 1 HETATM 18 C C13 MKO . . . E 5 8.48 -19.493 -21.503 0.7 19.2 0 C13 MKO 204 A 1 HETATM 19 O O14 MKO . . . E 5 9.654 -19.26 -20.749 0.7 20.43 0 O14 MKO 204 A 1 HETATM 20 C C15 MKO . . . E 5 9.599 -18.725 -19.443 0.7 19.17 0 C15 MKO 204 A 1 HETATM 21 C C16 MKO . . . E 5 10.926 -18.583 -18.785 0.7 16.49 0 C16 MKO 204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #