data_8AJ4 # _model_server_result.job_id DixIjd0stX2pCILFk_wM4g _model_server_result.datetime_utc '2024-11-29 06:23:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8aj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8AJ4 # _exptl.entry_id 8AJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.145 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene]" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8AJ4 _cell.length_a 77.08 _cell.length_b 77.08 _cell.length_c 38.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A OD1 ASN 65 AAA ASN 65 1_555 F V1 MKO . AAA MKO 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 A OD1 ASN 65 AAA ASN 65 1_555 F V1 MKO . AAA MKO 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc6 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc8 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C12 H10 O8 V' _chem_comp.formula_weight 333.145 _chem_comp.id MKO _chem_comp.mon_nstd_flag . _chem_comp.name "8,8-bis($l^{1}-oxidanyl)-2,2'-dimethyl-8,8'-spirobi[3$l^{4},7,9-trioxa-8$l^{6}-vanadabicyclo[4.3.0]nona-1(6),2,4-triene]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 MKO doub 270 n y C13 O14 MKO sing 271 n y C12 C11 MKO sing 272 n y O14 C15 MKO doub 273 n y C11 O11 MKO sing 274 n n C11 C10 MKO doub 275 n y C15 C10 MKO sing 276 n y C15 C16 MKO sing 277 n n C6 C5 MKO doub 278 n y C6 O7 MKO sing 279 n y O11 V1 MKO sing 280 n n C5 C4 MKO sing 281 n y C10 O10 MKO sing 282 n n O7 C8 MKO doub 283 n y C4 O4 MKO sing 284 n n C4 C3 MKO doub 285 n y O4 V1 MKO sing 286 n n C8 C3 MKO sing 287 n y C8 C9 MKO sing 288 n n C3 O3 MKO sing 289 n n O10 V1 MKO sing 290 n n V1 O3 MKO sing 291 n n V1 O2 MKO sing 292 n n V1 O1 MKO sing 293 n n C5 H2 MKO sing 294 n n C6 H3 MKO sing 295 n n C9 H5 MKO sing 296 n n C9 H6 MKO sing 297 n n C9 H7 MKO sing 298 n n C12 H8 MKO sing 299 n n C13 H9 MKO sing 300 n n C16 H10 MKO sing 301 n n C16 H11 MKO sing 302 n n C16 H12 MKO sing 303 n n # _atom_sites.entry_id 8AJ4 _atom_sites.fract_transf_matrix[1][1] 0.012974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 EPE AAA 1 202 1 EPE EPE . D 4 MKO AAA 1 203 1 MKO MAL . E 4 MKO AAA 1 204 2 MKO MAL . F 4 MKO AAA 1 205 3 MKO VML . G 5 HOH AAA 1 301 37 HOH HOH . G 5 HOH AAA 2 302 17 HOH HOH . G 5 HOH AAA 3 303 69 HOH HOH . G 5 HOH AAA 4 304 110 HOH HOH . G 5 HOH AAA 5 305 137 HOH HOH . G 5 HOH AAA 6 306 52 HOH HOH . G 5 HOH AAA 7 307 33 HOH HOH . G 5 HOH AAA 8 308 133 HOH HOH . G 5 HOH AAA 9 309 122 HOH HOH . G 5 HOH AAA 10 310 70 HOH HOH . G 5 HOH AAA 11 311 120 HOH HOH . G 5 HOH AAA 12 312 148 HOH HOH . G 5 HOH AAA 13 313 97 HOH HOH . G 5 HOH AAA 14 314 90 HOH HOH . G 5 HOH AAA 15 315 86 HOH HOH . G 5 HOH AAA 16 316 158 HOH HOH . G 5 HOH AAA 17 317 22 HOH HOH . G 5 HOH AAA 18 318 32 HOH HOH . G 5 HOH AAA 19 319 98 HOH HOH . G 5 HOH AAA 20 320 29 HOH HOH . G 5 HOH AAA 21 321 24 HOH HOH . G 5 HOH AAA 22 322 94 HOH HOH . G 5 HOH AAA 23 323 154 HOH HOH . G 5 HOH AAA 24 324 131 HOH HOH . G 5 HOH AAA 25 325 165 HOH HOH . G 5 HOH AAA 26 326 20 HOH HOH . G 5 HOH AAA 27 327 164 HOH HOH . G 5 HOH AAA 28 328 16 HOH HOH . G 5 HOH AAA 29 329 141 HOH HOH . G 5 HOH AAA 30 330 96 HOH HOH . G 5 HOH AAA 31 331 48 HOH HOH . G 5 HOH AAA 32 332 95 HOH HOH . G 5 HOH AAA 33 333 105 HOH HOH . G 5 HOH AAA 34 334 18 HOH HOH . G 5 HOH AAA 35 335 1 HOH HOH . G 5 HOH AAA 36 336 159 HOH HOH . G 5 HOH AAA 37 337 85 HOH HOH . G 5 HOH AAA 38 338 119 HOH HOH . G 5 HOH AAA 39 339 11 HOH HOH . G 5 HOH AAA 40 340 2 HOH HOH . G 5 HOH AAA 41 341 26 HOH HOH . G 5 HOH AAA 42 342 102 HOH HOH . G 5 HOH AAA 43 343 49 HOH HOH . G 5 HOH AAA 44 344 54 HOH HOH . G 5 HOH AAA 45 345 21 HOH HOH . G 5 HOH AAA 46 346 53 HOH HOH . G 5 HOH AAA 47 347 115 HOH HOH . G 5 HOH AAA 48 348 51 HOH HOH . G 5 HOH AAA 49 349 19 HOH HOH . G 5 HOH AAA 50 350 75 HOH HOH . G 5 HOH AAA 51 351 121 HOH HOH . G 5 HOH AAA 52 352 72 HOH HOH . G 5 HOH AAA 53 353 68 HOH HOH . G 5 HOH AAA 54 354 47 HOH HOH . G 5 HOH AAA 55 355 107 HOH HOH . G 5 HOH AAA 56 356 114 HOH HOH . G 5 HOH AAA 57 357 40 HOH HOH . G 5 HOH AAA 58 358 73 HOH HOH . G 5 HOH AAA 59 359 160 HOH HOH . G 5 HOH AAA 60 360 118 HOH HOH . G 5 HOH AAA 61 361 12 HOH HOH . G 5 HOH AAA 62 362 77 HOH HOH . G 5 HOH AAA 63 363 3 HOH HOH . G 5 HOH AAA 64 364 116 HOH HOH . G 5 HOH AAA 65 365 9 HOH HOH . G 5 HOH AAA 66 366 129 HOH HOH . G 5 HOH AAA 67 367 60 HOH HOH . G 5 HOH AAA 68 368 156 HOH HOH . G 5 HOH AAA 69 369 74 HOH HOH . G 5 HOH AAA 70 370 155 HOH HOH . G 5 HOH AAA 71 371 57 HOH HOH . G 5 HOH AAA 72 372 8 HOH HOH . G 5 HOH AAA 73 373 55 HOH HOH . G 5 HOH AAA 74 374 91 HOH HOH . G 5 HOH AAA 75 375 4 HOH HOH . G 5 HOH AAA 76 376 88 HOH HOH . G 5 HOH AAA 77 377 41 HOH HOH . G 5 HOH AAA 78 378 14 HOH HOH . G 5 HOH AAA 79 379 7 HOH HOH . G 5 HOH AAA 80 380 15 HOH HOH . G 5 HOH AAA 81 381 6 HOH HOH . G 5 HOH AAA 82 382 109 HOH HOH . G 5 HOH AAA 83 383 67 HOH HOH . G 5 HOH AAA 84 384 43 HOH HOH . G 5 HOH AAA 85 385 42 HOH HOH . G 5 HOH AAA 86 386 50 HOH HOH . G 5 HOH AAA 87 387 28 HOH HOH . G 5 HOH AAA 88 388 127 HOH HOH . G 5 HOH AAA 89 389 13 HOH HOH . G 5 HOH AAA 90 390 101 HOH HOH . G 5 HOH AAA 91 391 62 HOH HOH . G 5 HOH AAA 92 392 10 HOH HOH . G 5 HOH AAA 93 393 5 HOH HOH . G 5 HOH AAA 94 394 123 HOH HOH . G 5 HOH AAA 95 395 56 HOH HOH . G 5 HOH AAA 96 396 161 HOH HOH . G 5 HOH AAA 97 397 130 HOH HOH . G 5 HOH AAA 98 398 31 HOH HOH . G 5 HOH AAA 99 399 45 HOH HOH . G 5 HOH AAA 100 400 147 HOH HOH . G 5 HOH AAA 101 401 27 HOH HOH . G 5 HOH AAA 102 402 89 HOH HOH . G 5 HOH AAA 103 403 145 HOH HOH . G 5 HOH AAA 104 404 30 HOH HOH . G 5 HOH AAA 105 405 103 HOH HOH . G 5 HOH AAA 106 406 157 HOH HOH . G 5 HOH AAA 107 407 151 HOH HOH . G 5 HOH AAA 108 408 162 HOH HOH . G 5 HOH AAA 109 409 46 HOH HOH . G 5 HOH AAA 110 410 126 HOH HOH . G 5 HOH AAA 111 411 58 HOH HOH . G 5 HOH AAA 112 412 71 HOH HOH . G 5 HOH AAA 113 413 136 HOH HOH . G 5 HOH AAA 114 414 139 HOH HOH . G 5 HOH AAA 115 415 108 HOH HOH . G 5 HOH AAA 116 416 61 HOH HOH . G 5 HOH AAA 117 417 23 HOH HOH . G 5 HOH AAA 118 418 111 HOH HOH . G 5 HOH AAA 119 419 163 HOH HOH . G 5 HOH AAA 120 420 106 HOH HOH . G 5 HOH AAA 121 421 124 HOH HOH . G 5 HOH AAA 122 422 25 HOH HOH . G 5 HOH AAA 123 423 59 HOH HOH . G 5 HOH AAA 124 424 112 HOH HOH . G 5 HOH AAA 125 425 168 HOH HOH . G 5 HOH AAA 126 426 99 HOH HOH . G 5 HOH AAA 127 427 44 HOH HOH . G 5 HOH AAA 128 428 149 HOH HOH . G 5 HOH AAA 129 429 87 HOH HOH . G 5 HOH AAA 130 430 104 HOH HOH . G 5 HOH AAA 131 431 146 HOH HOH . G 5 HOH AAA 132 432 150 HOH HOH . G 5 HOH AAA 133 433 64 HOH HOH . G 5 HOH AAA 134 434 169 HOH HOH . G 5 HOH AAA 135 435 166 HOH HOH . G 5 HOH AAA 136 436 117 HOH HOH . G 5 HOH AAA 137 437 153 HOH HOH . G 5 HOH AAA 138 438 135 HOH HOH . G 5 HOH AAA 139 439 100 HOH HOH . G 5 HOH AAA 140 440 125 HOH HOH . G 5 HOH AAA 141 441 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MKO . . . D 4 6.473 -16.811 -15.974 0.8 18.26 0 O1 MKO 203 AAA 1 HETATM 2 C C3 MKO . . . D 4 3.977 -16.215 -18.001 0.8 22.92 0 C3 MKO 203 AAA 1 HETATM 3 C C4 MKO . . . D 4 4.984 -15.433 -18.51 0.8 23.43 0 C4 MKO 203 AAA 1 HETATM 4 C C5 MKO . . . D 4 4.632 -14.227 -19.251 0.8 26.42 0 C5 MKO 203 AAA 1 HETATM 5 C C6 MKO . . . D 4 3.332 -13.879 -19.349 0.8 26.39 0 C6 MKO 203 AAA 1 HETATM 6 O O2 MKO . . . D 4 6.298 -19.158 -16.507 0.8 19.82 0 O2 MKO 203 AAA 1 HETATM 7 O O3 MKO . . . D 4 4.344 -17.172 -17.285 0.8 21.12 0 O3 MKO 203 AAA 1 HETATM 8 O O4 MKO . . . D 4 6.189 -15.801 -18.236 0.8 24.78 0 O4 MKO 203 AAA 1 HETATM 9 V V1 MKO . . . D 4 6.29 -17.527 -17.352 0.8 18.98 0 V1 MKO 203 AAA 1 HETATM 10 O O7 MKO . . . D 4 2.355 -14.636 -18.831 0.8 27.18 0 O7 MKO 203 AAA 1 HETATM 11 C C8 MKO . . . D 4 2.631 -15.802 -18.147 0.8 24.73 0 C8 MKO 203 AAA 1 HETATM 12 C C9 MKO . . . D 4 1.447 -16.504 -17.659 0.8 24.49 0 C9 MKO 203 AAA 1 HETATM 13 O O10 MKO . . . D 4 8.116 -17.522 -17.603 0.8 23.14 0 O10 MKO 203 AAA 1 HETATM 14 O O11 MKO . . . D 4 6.072 -18.419 -19.073 0.8 23.39 0 O11 MKO 203 AAA 1 HETATM 15 C C10 MKO . . . D 4 8.452 -18.363 -18.887 0.8 23.91 0 C10 MKO 203 AAA 1 HETATM 16 C C11 MKO . . . D 4 7.245 -18.733 -19.651 0.8 25.29 0 C11 MKO 203 AAA 1 HETATM 17 C C12 MKO . . . D 4 7.391 -19.217 -20.968 0.8 26.88 0 C12 MKO 203 AAA 1 HETATM 18 C C13 MKO . . . D 4 8.626 -19.576 -21.389 0.8 24.67 0 C13 MKO 203 AAA 1 HETATM 19 O O14 MKO . . . D 4 9.732 -19.342 -20.637 0.8 26.57 0 O14 MKO 203 AAA 1 HETATM 20 C C15 MKO . . . D 4 9.646 -18.7 -19.363 0.8 23.82 0 C15 MKO 203 AAA 1 HETATM 21 C C16 MKO . . . D 4 10.894 -18.561 -18.696 0.8 23.01 0 C16 MKO 203 AAA 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #