data_8AK5 # _model_server_result.job_id '_VJTOyHEun4rRNW4t7MIPA' _model_server_result.datetime_utc '2024-11-18 04:27:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ak5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 8AK5 # _exptl.entry_id 8AK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AK5 _cell.length_a 90.986 _cell.length_b 90.986 _cell.length_c 144.318 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,T 1 1 B,L,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 340 n n C1 C2 PGE sing 341 n n C1 H1 PGE sing 342 n n C1 H12 PGE sing 343 n n O1 HO1 PGE sing 344 n n C2 O2 PGE sing 345 n n C2 H2 PGE sing 346 n n C2 H22 PGE sing 347 n n O2 C3 PGE sing 348 n n C3 C4 PGE sing 349 n n C3 H3 PGE sing 350 n n C3 H32 PGE sing 351 n n C4 O3 PGE sing 352 n n C4 H4 PGE sing 353 n n C4 H42 PGE sing 354 n n O4 C6 PGE sing 355 n n O4 HO4 PGE sing 356 n n C6 C5 PGE sing 357 n n C6 H6 PGE sing 358 n n C6 H62 PGE sing 359 n n C5 O3 PGE sing 360 n n C5 H5 PGE sing 361 n n C5 H52 PGE sing 362 n n # _atom_sites.entry_id 8AK5 _atom_sites.fract_transf_matrix[1][1] 0.010991 _atom_sites.fract_transf_matrix[1][2] 0.006345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 500 AR6 AR6 . D 3 ZN A 1 402 501 ZN ZN . E 4 PCA A 1 403 502 PCA PCA . F 5 EDO A 1 404 507 EDO EDO . G 6 PGE A 1 405 508 PGE PGE . H 7 SO4 A 1 406 2 SO4 SO4 . I 7 SO4 A 1 407 4 SO4 SO4 . J 7 SO4 A 1 408 6 SO4 SO4 . K 7 SO4 A 1 409 7 SO4 SO4 . L 8 PEG B 1 401 505 PEG PEG . M 2 AR6 B 1 402 500 AR6 AR6 . N 3 ZN B 1 403 501 ZN ZN . O 4 PCA B 1 404 502 PCA PCA . P 8 PEG B 1 405 503 PEG PEG . Q 7 SO4 B 1 406 1 SO4 SO4 . R 7 SO4 B 1 407 3 SO4 SO4 . S 7 SO4 B 1 408 5 SO4 SO4 . T 9 HOH A 1 501 21 HOH HOH . T 9 HOH A 2 502 19 HOH HOH . T 9 HOH A 3 503 39 HOH HOH . T 9 HOH A 4 504 10 HOH HOH . T 9 HOH A 5 505 6 HOH HOH . T 9 HOH A 6 506 30 HOH HOH . T 9 HOH A 7 507 18 HOH HOH . T 9 HOH A 8 508 17 HOH HOH . T 9 HOH A 9 509 23 HOH HOH . T 9 HOH A 10 510 4 HOH HOH . T 9 HOH A 11 511 24 HOH HOH . T 9 HOH A 12 512 34 HOH HOH . T 9 HOH A 13 513 14 HOH HOH . T 9 HOH A 14 514 27 HOH HOH . T 9 HOH A 15 515 22 HOH HOH . T 9 HOH A 16 516 40 HOH HOH . T 9 HOH A 17 517 25 HOH HOH . T 9 HOH A 18 518 13 HOH HOH . T 9 HOH A 19 519 9 HOH HOH . T 9 HOH A 20 520 32 HOH HOH . T 9 HOH A 21 521 26 HOH HOH . T 9 HOH A 22 522 11 HOH HOH . T 9 HOH A 23 523 15 HOH HOH . T 9 HOH A 24 524 12 HOH HOH . T 9 HOH A 25 525 3 HOH HOH . U 9 HOH B 1 501 28 HOH HOH . U 9 HOH B 2 502 41 HOH HOH . U 9 HOH B 3 503 1 HOH HOH . U 9 HOH B 4 504 2 HOH HOH . U 9 HOH B 5 505 36 HOH HOH . U 9 HOH B 6 506 33 HOH HOH . U 9 HOH B 7 507 16 HOH HOH . U 9 HOH B 8 508 20 HOH HOH . U 9 HOH B 9 509 29 HOH HOH . U 9 HOH B 10 510 38 HOH HOH . U 9 HOH B 11 511 37 HOH HOH . U 9 HOH B 12 512 35 HOH HOH . U 9 HOH B 13 513 8 HOH HOH . U 9 HOH B 14 514 5 HOH HOH . U 9 HOH B 15 515 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 6 -26.412 25.236 13.987 1 45.57 ? C1 PGE 405 A 1 HETATM 2 O O1 PGE . . . G 6 -26.478 26.527 14.596 1 43.17 ? O1 PGE 405 A 1 HETATM 3 C C2 PGE . . . G 6 -27.493 25.122 12.943 1 44.69 ? C2 PGE 405 A 1 HETATM 4 O O2 PGE . . . G 6 -27.212 26.047 11.886 1 44.26 ? O2 PGE 405 A 1 HETATM 5 C C3 PGE . . . G 6 -27.999 25.777 10.712 1 39.79 ? C3 PGE 405 A 1 HETATM 6 C C4 PGE . . . G 6 -27.115 25.051 9.694 1 32.89 ? C4 PGE 405 A 1 HETATM 7 O O4 PGE . . . G 6 -27.577 21.671 6.377 1 46.21 ? O4 PGE 405 A 1 HETATM 8 C C6 PGE . . . G 6 -28.185 22.353 7.489 1 44.49 ? C6 PGE 405 A 1 HETATM 9 C C5 PGE . . . G 6 -27.181 23.148 8.261 1 40.44 ? C5 PGE 405 A 1 HETATM 10 O O3 PGE . . . G 6 -27.868 23.927 9.238 1 42.06 ? O3 PGE 405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 10 #