data_8AK6
#
_model_server_result.job_id            VM5k5tiV7CXMcugW8R_PUg 
_model_server_result.datetime_utc      '2024-11-14 06:54:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ak6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":407}' 
#
_entry.id    8AK6 
#
_exptl.entry_id    8AK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8AK6 
_cell.length_a            90.995 
_cell.length_b            90.995 
_cell.length_c            144.163 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8AK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,S 1 1 
B,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 O ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 174 n n 
C1 C2 EDO sing 175 n n 
C1 H11 EDO sing 176 n n 
C1 H12 EDO sing 177 n n 
O1 HO1 EDO sing 178 n n 
C2 O2 EDO sing 179 n n 
C2 H21 EDO sing 180 n n 
C2 H22 EDO sing 181 n n 
O2 HO2 EDO sing 182 n n 
#
_atom_sites.entry_id                     8AK6 
_atom_sites.fract_transf_matrix[1][1]    0.01099 
_atom_sites.fract_transf_matrix[1][2]    0.006345 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01269 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006937 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR6 A 1 401 500 AR6 AR6 . 
D 3 ZN A 1 402 501 ZN ZN . 
E 4 08D A 1 403 502 08D 08D . 
F 5 PEG A 1 404 503 PEG PEG . 
G 6 EDO A 1 405 505 EDO EDO . 
H 6 EDO A 1 406 506 EDO EDO . 
I 6 EDO A 1 407 503 EDO EDO . 
J 7 SO4 A 1 408 1 SO4 SO4 . 
K 7 SO4 A 1 409 3 SO4 SO4 . 
L 7 SO4 A 1 410 4 SO4 SO4 . 
M 7 SO4 A 1 411 5 SO4 SO4 . 
N 2 AR6 B 1 401 500 AR6 AR6 . 
O 3 ZN B 1 402 501 ZN ZN . 
P 4 08D B 1 403 502 08D 08D . 
Q 6 EDO B 1 404 504 EDO EDO . 
R 7 SO4 B 1 405 2 SO4 SO4 . 
S 8 HOH A 1 501 12 HOH HOH . 
S 8 HOH A 2 502 32 HOH HOH . 
S 8 HOH A 3 503 5 HOH HOH . 
S 8 HOH A 4 504 2 HOH HOH . 
S 8 HOH A 5 505 45 HOH HOH . 
S 8 HOH A 6 506 44 HOH HOH . 
S 8 HOH A 7 507 10 HOH HOH . 
S 8 HOH A 8 508 35 HOH HOH . 
S 8 HOH A 9 509 23 HOH HOH . 
S 8 HOH A 10 510 54 HOH HOH . 
S 8 HOH A 11 511 6 HOH HOH . 
S 8 HOH A 12 512 42 HOH HOH . 
S 8 HOH A 13 513 15 HOH HOH . 
S 8 HOH A 14 514 19 HOH HOH . 
S 8 HOH A 15 515 29 HOH HOH . 
S 8 HOH A 16 516 55 HOH HOH . 
S 8 HOH A 17 517 33 HOH HOH . 
S 8 HOH A 18 518 27 HOH HOH . 
S 8 HOH A 19 519 25 HOH HOH . 
S 8 HOH A 20 520 52 HOH HOH . 
S 8 HOH A 21 521 36 HOH HOH . 
S 8 HOH A 22 522 26 HOH HOH . 
S 8 HOH A 23 523 39 HOH HOH . 
S 8 HOH A 24 524 1 HOH HOH . 
S 8 HOH A 25 525 50 HOH HOH . 
S 8 HOH A 26 526 46 HOH HOH . 
S 8 HOH A 27 527 43 HOH HOH . 
S 8 HOH A 28 528 47 HOH HOH . 
S 8 HOH A 29 529 49 HOH HOH . 
S 8 HOH A 30 530 17 HOH HOH . 
S 8 HOH A 31 531 53 HOH HOH . 
S 8 HOH A 32 532 34 HOH HOH . 
S 8 HOH A 33 533 31 HOH HOH . 
T 8 HOH B 1 501 3 HOH HOH . 
T 8 HOH B 2 502 30 HOH HOH . 
T 8 HOH B 3 503 7 HOH HOH . 
T 8 HOH B 4 504 22 HOH HOH . 
T 8 HOH B 5 505 8 HOH HOH . 
T 8 HOH B 6 506 41 HOH HOH . 
T 8 HOH B 7 507 20 HOH HOH . 
T 8 HOH B 8 508 24 HOH HOH . 
T 8 HOH B 9 509 38 HOH HOH . 
T 8 HOH B 10 510 21 HOH HOH . 
T 8 HOH B 11 511 28 HOH HOH . 
T 8 HOH B 12 512 18 HOH HOH . 
T 8 HOH B 13 513 9 HOH HOH . 
T 8 HOH B 14 514 13 HOH HOH . 
T 8 HOH B 15 515 40 HOH HOH . 
T 8 HOH B 16 516 37 HOH HOH . 
T 8 HOH B 17 517 48 HOH HOH . 
T 8 HOH B 18 518 4 HOH HOH . 
T 8 HOH B 19 519 14 HOH HOH . 
T 8 HOH B 20 520 51 HOH HOH . 
T 8 HOH B 21 521 11 HOH HOH . 
T 8 HOH B 22 522 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 6 -33.129 8.369 35.588 1 64.87 ? C1 EDO 407 A 1 
HETATM 2 O O1 EDO . . . I 6 -32.939 9.754 35.837 1 54.35 ? O1 EDO 407 A 1 
HETATM 3 C C2 EDO . . . I 6 -34.118 8.129 34.495 1 68.35 ? C2 EDO 407 A 1 
HETATM 4 O O2 EDO . . . I 6 -34.293 9.251 33.637 1 66.27 ? O2 EDO 407 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#