data_8AK9 # _model_server_result.job_id ALv1rJ2nd7D7kbAKM15Q8Q _model_server_result.datetime_utc '2025-01-10 08:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ak9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":404}' # _entry.id 8AK9 # _exptl.entry_id 8AK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AK9 _cell.length_a 91.047 _cell.length_b 91.047 _cell.length_c 143.934 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,Y 1 1 B,M,N,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 M N N ? 9 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 325 n n C1 C2 PEG sing 326 n n C1 H11 PEG sing 327 n n C1 H12 PEG sing 328 n n O1 HO1 PEG sing 329 n n C2 O2 PEG sing 330 n n C2 H21 PEG sing 331 n n C2 H22 PEG sing 332 n n O2 C3 PEG sing 333 n n C3 C4 PEG sing 334 n n C3 H31 PEG sing 335 n n C3 H32 PEG sing 336 n n C4 O4 PEG sing 337 n n C4 H41 PEG sing 338 n n C4 H42 PEG sing 339 n n O4 HO4 PEG sing 340 n n # _atom_sites.entry_id 8AK9 _atom_sites.fract_transf_matrix[1][1] 0.010983 _atom_sites.fract_transf_matrix[1][2] 0.006341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 500 AR6 AR6 . D 3 ZN A 1 402 501 ZN ZN . E 4 EDO A 1 403 503 EDO EDO . F 5 PG4 A 1 404 504 PG4 PG4 . G 6 SO4 A 1 405 3 SO4 SO4 . H 6 SO4 A 1 406 5 SO4 SO4 . I 6 SO4 A 1 407 7 SO4 SO4 . J 6 SO4 A 1 408 9 SO4 SO4 . K 7 ISN A 1 409 1 ISN ISN . L 8 CL A 1 410 1 CL CL . M 9 PEG B 1 401 502 PEG PEG . N 2 AR6 B 1 402 500 AR6 AR6 . O 3 ZN B 1 403 501 ZN ZN . P 9 PEG B 1 404 502 PEG PEG . Q 5 PG4 B 1 405 503 PG4 PG4 . R 6 SO4 B 1 406 1 SO4 SO4 . S 6 SO4 B 1 407 2 SO4 SO4 . T 6 SO4 B 1 408 4 SO4 SO4 . U 6 SO4 B 1 409 6 SO4 SO4 . V 6 SO4 B 1 410 8 SO4 SO4 . W 7 ISN B 1 411 2 ISN ISN . X 8 CL B 1 412 2 CL CL . Y 10 HOH A 1 501 82 HOH HOH . Y 10 HOH A 2 502 64 HOH HOH . Y 10 HOH A 3 503 8 HOH HOH . Y 10 HOH A 4 504 12 HOH HOH . Y 10 HOH A 5 505 85 HOH HOH . Y 10 HOH A 6 506 54 HOH HOH . Y 10 HOH A 7 507 50 HOH HOH . Y 10 HOH A 8 508 75 HOH HOH . Y 10 HOH A 9 509 65 HOH HOH . Y 10 HOH A 10 510 35 HOH HOH . Y 10 HOH A 11 511 74 HOH HOH . Y 10 HOH A 12 512 46 HOH HOH . Y 10 HOH A 13 513 81 HOH HOH . Y 10 HOH A 14 514 48 HOH HOH . Y 10 HOH A 15 515 77 HOH HOH . Y 10 HOH A 16 516 30 HOH HOH . Y 10 HOH A 17 517 5 HOH HOH . Y 10 HOH A 18 518 28 HOH HOH . Y 10 HOH A 19 519 43 HOH HOH . Y 10 HOH A 20 520 20 HOH HOH . Y 10 HOH A 21 521 40 HOH HOH . Y 10 HOH A 22 522 38 HOH HOH . Y 10 HOH A 23 523 60 HOH HOH . Y 10 HOH A 24 524 4 HOH HOH . Y 10 HOH A 25 525 63 HOH HOH . Y 10 HOH A 26 526 25 HOH HOH . Y 10 HOH A 27 527 45 HOH HOH . Y 10 HOH A 28 528 58 HOH HOH . Y 10 HOH A 29 529 1 HOH HOH . Y 10 HOH A 30 530 34 HOH HOH . Y 10 HOH A 31 531 31 HOH HOH . Y 10 HOH A 32 532 100 HOH HOH . Y 10 HOH A 33 533 84 HOH HOH . Y 10 HOH A 34 534 78 HOH HOH . Y 10 HOH A 35 535 94 HOH HOH . Y 10 HOH A 36 536 37 HOH HOH . Y 10 HOH A 37 537 91 HOH HOH . Y 10 HOH A 38 538 79 HOH HOH . Y 10 HOH A 39 539 73 HOH HOH . Y 10 HOH A 40 540 9 HOH HOH . Y 10 HOH A 41 541 29 HOH HOH . Y 10 HOH A 42 542 14 HOH HOH . Y 10 HOH A 43 543 42 HOH HOH . Y 10 HOH A 44 544 44 HOH HOH . Y 10 HOH A 45 545 57 HOH HOH . Y 10 HOH A 46 546 56 HOH HOH . Y 10 HOH A 47 547 47 HOH HOH . Y 10 HOH A 48 548 23 HOH HOH . Y 10 HOH A 49 549 76 HOH HOH . Y 10 HOH A 50 550 24 HOH HOH . Y 10 HOH A 51 551 90 HOH HOH . Y 10 HOH A 52 552 98 HOH HOH . Y 10 HOH A 53 553 88 HOH HOH . Y 10 HOH A 54 554 2 HOH HOH . Y 10 HOH A 55 555 86 HOH HOH . Y 10 HOH A 56 556 83 HOH HOH . Y 10 HOH A 57 557 13 HOH HOH . Y 10 HOH A 58 558 80 HOH HOH . Y 10 HOH A 59 559 92 HOH HOH . Y 10 HOH A 60 560 93 HOH HOH . Y 10 HOH A 61 561 66 HOH HOH . Y 10 HOH A 62 562 67 HOH HOH . Z 10 HOH B 1 501 68 HOH HOH . Z 10 HOH B 2 502 71 HOH HOH . Z 10 HOH B 3 503 96 HOH HOH . Z 10 HOH B 4 504 95 HOH HOH . Z 10 HOH B 5 505 62 HOH HOH . Z 10 HOH B 6 506 11 HOH HOH . Z 10 HOH B 7 507 7 HOH HOH . Z 10 HOH B 8 508 19 HOH HOH . Z 10 HOH B 9 509 55 HOH HOH . Z 10 HOH B 10 510 33 HOH HOH . Z 10 HOH B 11 511 26 HOH HOH . Z 10 HOH B 12 512 72 HOH HOH . Z 10 HOH B 13 513 15 HOH HOH . Z 10 HOH B 14 514 87 HOH HOH . Z 10 HOH B 15 515 17 HOH HOH . Z 10 HOH B 16 516 41 HOH HOH . Z 10 HOH B 17 517 53 HOH HOH . Z 10 HOH B 18 518 39 HOH HOH . Z 10 HOH B 19 519 10 HOH HOH . Z 10 HOH B 20 520 97 HOH HOH . Z 10 HOH B 21 521 99 HOH HOH . Z 10 HOH B 22 522 27 HOH HOH . Z 10 HOH B 23 523 101 HOH HOH . Z 10 HOH B 24 524 6 HOH HOH . Z 10 HOH B 25 525 32 HOH HOH . Z 10 HOH B 26 526 70 HOH HOH . Z 10 HOH B 27 527 36 HOH HOH . Z 10 HOH B 28 528 51 HOH HOH . Z 10 HOH B 29 529 89 HOH HOH . Z 10 HOH B 30 530 22 HOH HOH . Z 10 HOH B 31 531 49 HOH HOH . Z 10 HOH B 32 532 52 HOH HOH . Z 10 HOH B 33 533 21 HOH HOH . Z 10 HOH B 34 534 16 HOH HOH . Z 10 HOH B 35 535 18 HOH HOH . Z 10 HOH B 36 536 61 HOH HOH . Z 10 HOH B 37 537 59 HOH HOH . Z 10 HOH B 38 538 3 HOH HOH . Z 10 HOH B 39 539 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . P 9 -32.387 7.384 36.628 1 65.96 ? C1 PEG 404 B 1 HETATM 2 O O1 PEG . . . P 9 -31.407 6.668 37.35 1 64.34 ? O1 PEG 404 B 1 HETATM 3 C C2 PEG . . . P 9 -32.131 8.865 36.639 1 68.92 ? C2 PEG 404 B 1 HETATM 4 O O2 PEG . . . P 9 -33.226 9.566 36.062 1 70.23 ? O2 PEG 404 B 1 HETATM 5 C C3 PEG . . . P 9 -33.265 9.489 34.643 1 70.01 ? C3 PEG 404 B 1 HETATM 6 C C4 PEG . . . P 9 -34.688 9.434 34.201 1 66.57 ? C4 PEG 404 B 1 HETATM 7 O O4 PEG . . . P 9 -34.817 9.027 32.868 1 59.84 ? O4 PEG 404 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #