data_8AKB # _model_server_result.job_id iefUbPxVtLA5mf4qljUfLQ _model_server_result.datetime_utc '2025-01-10 08:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8akb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8AKB # _exptl.entry_id 8AKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 155.108 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-NITROCATECHOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AKB _cell.length_a 90.974 _cell.length_b 90.974 _cell.length_c 144.316 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 L ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C6 H5 N O4' _chem_comp.formula_weight 155.108 _chem_comp.id 4NC _chem_comp.mon_nstd_flag . _chem_comp.name 4-NITROCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4NC doub 1 n y C1 C6 4NC sing 2 n y C1 O7 4NC sing 3 n n C2 C3 4NC sing 4 n y C2 O8 4NC sing 5 n n C3 C4 4NC doub 6 n y C3 H3 4NC sing 7 n n C4 C5 4NC sing 8 n y C4 N9 4NC sing 9 n n C5 C6 4NC doub 10 n y C5 H5 4NC sing 11 n n C6 H6 4NC sing 12 n n O7 HO7 4NC sing 13 n n O8 HO8 4NC sing 14 n n N9 O10 4NC doub 15 n n N9 O11 4NC sing 16 n n # _atom_sites.entry_id 8AKB _atom_sites.fract_transf_matrix[1][1] 0.010992 _atom_sites.fract_transf_matrix[1][2] 0.006346 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 500 AR6 AR6 . D 3 ZN A 1 402 501 ZN ZN . E 4 4NC A 1 403 502 4NC 4NC . F 5 EDO A 1 404 504 EDO EDO . G 5 EDO A 1 405 503 EDO EDO . H 6 SO4 A 1 406 1 SO4 SO4 . I 6 SO4 A 1 407 3 SO4 SO4 . J 7 PEG B 1 401 503 PEG PEG . K 2 AR6 B 1 402 500 AR6 AR6 . L 3 ZN B 1 403 501 ZN ZN . M 4 4NC B 1 404 502 4NC 4NC . N 6 SO4 B 1 405 2 SO4 SO4 . O 6 SO4 B 1 406 4 SO4 SO4 . P 8 HOH A 1 501 27 HOH HOH . P 8 HOH A 2 502 2 HOH HOH . P 8 HOH A 3 503 11 HOH HOH . P 8 HOH A 4 504 14 HOH HOH . P 8 HOH A 5 505 4 HOH HOH . P 8 HOH A 6 506 24 HOH HOH . P 8 HOH A 7 507 8 HOH HOH . P 8 HOH A 8 508 9 HOH HOH . P 8 HOH A 9 509 20 HOH HOH . P 8 HOH A 10 510 3 HOH HOH . P 8 HOH A 11 511 21 HOH HOH . P 8 HOH A 12 512 10 HOH HOH . P 8 HOH A 13 513 7 HOH HOH . P 8 HOH A 14 514 26 HOH HOH . P 8 HOH A 15 515 1 HOH HOH . P 8 HOH A 16 516 30 HOH HOH . P 8 HOH A 17 517 28 HOH HOH . P 8 HOH A 18 518 29 HOH HOH . P 8 HOH A 19 519 31 HOH HOH . Q 8 HOH B 1 501 16 HOH HOH . Q 8 HOH B 2 502 6 HOH HOH . Q 8 HOH B 3 503 15 HOH HOH . Q 8 HOH B 4 504 13 HOH HOH . Q 8 HOH B 5 505 22 HOH HOH . Q 8 HOH B 6 506 25 HOH HOH . Q 8 HOH B 7 507 17 HOH HOH . Q 8 HOH B 8 508 23 HOH HOH . Q 8 HOH B 9 509 5 HOH HOH . Q 8 HOH B 10 510 12 HOH HOH . Q 8 HOH B 11 511 18 HOH HOH . Q 8 HOH B 12 512 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4NC . . . E 4 -25.45 22.094 20.036 1 54.74 ? C1 4NC 403 A 1 HETATM 2 C C2 4NC . . . E 4 -24.226 22.205 19.364 1 59.13 ? C2 4NC 403 A 1 HETATM 3 C C3 4NC . . . E 4 -23.664 23.452 19.174 1 59.49 ? C3 4NC 403 A 1 HETATM 4 C C4 4NC . . . E 4 -24.325 24.575 19.663 1 58.53 ? C4 4NC 403 A 1 HETATM 5 C C5 4NC . . . E 4 -25.54 24.474 20.331 1 58.83 ? C5 4NC 403 A 1 HETATM 6 C C6 4NC . . . E 4 -26.095 23.222 20.509 1 56.61 ? C6 4NC 403 A 1 HETATM 7 O O7 4NC . . . E 4 -26.032 20.875 20.205 1 47.51 ? O7 4NC 403 A 1 HETATM 8 O O8 4NC . . . E 4 -23.589 21.093 18.895 1 57.8 ? O8 4NC 403 A 1 HETATM 9 N N9 4NC . . . E 4 -23.724 25.889 19.462 1 64.16 ? N9 4NC 403 A 1 HETATM 10 O O10 4NC . . . E 4 -23.927 26.754 20.303 1 68.41 ? O10 4NC 403 A 1 HETATM 11 O O11 4NC . . . E 4 -23.051 26.072 18.455 1 66.09 ? O11 4NC 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #