data_8AKC # _model_server_result.job_id 7pYkAS366FsOzvEm-DsBDQ _model_server_result.datetime_utc '2024-11-15 20:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8akc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8AKC # _exptl.entry_id 8AKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8AKC _cell.length_a 91.071 _cell.length_b 91.071 _cell.length_c 143.588 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8AKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A SG CYS 138 A CYS 144 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A SG CYS 160 A CYS 166 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A SG CYS 171 A CYS 177 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc5 B SG CYS 135 B CYS 141 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 B SG CYS 138 B CYS 144 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 B SG CYS 160 B CYS 166 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc8 B SG CYS 171 B CYS 177 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 318 n n C1 C2 PEG sing 319 n n C1 H11 PEG sing 320 n n C1 H12 PEG sing 321 n n O1 HO1 PEG sing 322 n n C2 O2 PEG sing 323 n n C2 H21 PEG sing 324 n n C2 H22 PEG sing 325 n n O2 C3 PEG sing 326 n n C3 C4 PEG sing 327 n n C3 H31 PEG sing 328 n n C3 H32 PEG sing 329 n n C4 O4 PEG sing 330 n n C4 H41 PEG sing 331 n n C4 H42 PEG sing 332 n n O4 HO4 PEG sing 333 n n # _atom_sites.entry_id 8AKC _atom_sites.fract_transf_matrix[1][1] 0.01098 _atom_sites.fract_transf_matrix[1][2] 0.00634 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 401 500 AR6 AR6 . D 3 ZN A 1 402 501 ZN ZN . E 4 PEG A 1 403 503 PEG PEG . F 4 PEG A 1 404 503 PEG PEG . G 5 SO4 A 1 405 3 SO4 SO4 . H 5 SO4 A 1 406 4 SO4 SO4 . I 5 SO4 A 1 407 6 SO4 SO4 . J 6 GV9 A 1 408 1 GV9 GV9 . K 7 CL A 1 409 1 CL CL . L 7 CL A 1 410 2 CL CL . M 4 PEG B 1 401 502 PEG PEG . N 2 AR6 B 1 402 500 AR6 AR6 . O 3 ZN B 1 403 501 ZN ZN . P 4 PEG B 1 404 502 PEG PEG . Q 5 SO4 B 1 405 1 SO4 SO4 . R 5 SO4 B 1 406 2 SO4 SO4 . S 5 SO4 B 1 407 5 SO4 SO4 . T 6 GV9 B 1 408 2 GV9 GV9 . U 7 CL B 1 409 3 CL CL . V 8 HOH A 1 501 45 HOH HOH . V 8 HOH A 2 502 114 HOH HOH . V 8 HOH A 3 503 32 HOH HOH . V 8 HOH A 4 504 48 HOH HOH . V 8 HOH A 5 505 89 HOH HOH . V 8 HOH A 6 506 30 HOH HOH . V 8 HOH A 7 507 110 HOH HOH . V 8 HOH A 8 508 28 HOH HOH . V 8 HOH A 9 509 21 HOH HOH . V 8 HOH A 10 510 10 HOH HOH . V 8 HOH A 11 511 72 HOH HOH . V 8 HOH A 12 512 113 HOH HOH . V 8 HOH A 13 513 54 HOH HOH . V 8 HOH A 14 514 27 HOH HOH . V 8 HOH A 15 515 33 HOH HOH . V 8 HOH A 16 516 112 HOH HOH . V 8 HOH A 17 517 74 HOH HOH . V 8 HOH A 18 518 93 HOH HOH . V 8 HOH A 19 519 59 HOH HOH . V 8 HOH A 20 520 14 HOH HOH . V 8 HOH A 21 521 41 HOH HOH . V 8 HOH A 22 522 35 HOH HOH . V 8 HOH A 23 523 29 HOH HOH . V 8 HOH A 24 524 90 HOH HOH . V 8 HOH A 25 525 92 HOH HOH . V 8 HOH A 26 526 18 HOH HOH . V 8 HOH A 27 527 36 HOH HOH . V 8 HOH A 28 528 67 HOH HOH . V 8 HOH A 29 529 119 HOH HOH . V 8 HOH A 30 530 7 HOH HOH . V 8 HOH A 31 531 56 HOH HOH . V 8 HOH A 32 532 121 HOH HOH . V 8 HOH A 33 533 61 HOH HOH . V 8 HOH A 34 534 19 HOH HOH . V 8 HOH A 35 535 62 HOH HOH . V 8 HOH A 36 536 52 HOH HOH . V 8 HOH A 37 537 94 HOH HOH . V 8 HOH A 38 538 105 HOH HOH . V 8 HOH A 39 539 2 HOH HOH . V 8 HOH A 40 540 60 HOH HOH . V 8 HOH A 41 541 51 HOH HOH . V 8 HOH A 42 542 96 HOH HOH . V 8 HOH A 43 543 122 HOH HOH . V 8 HOH A 44 544 81 HOH HOH . V 8 HOH A 45 545 79 HOH HOH . V 8 HOH A 46 546 39 HOH HOH . V 8 HOH A 47 547 101 HOH HOH . V 8 HOH A 48 548 57 HOH HOH . V 8 HOH A 49 549 117 HOH HOH . V 8 HOH A 50 550 37 HOH HOH . V 8 HOH A 51 551 106 HOH HOH . V 8 HOH A 52 552 25 HOH HOH . V 8 HOH A 53 553 80 HOH HOH . V 8 HOH A 54 554 103 HOH HOH . V 8 HOH A 55 555 1 HOH HOH . V 8 HOH A 56 556 50 HOH HOH . V 8 HOH A 57 557 16 HOH HOH . V 8 HOH A 58 558 98 HOH HOH . V 8 HOH A 59 559 9 HOH HOH . V 8 HOH A 60 560 108 HOH HOH . V 8 HOH A 61 561 116 HOH HOH . V 8 HOH A 62 562 47 HOH HOH . V 8 HOH A 63 563 87 HOH HOH . V 8 HOH A 64 564 70 HOH HOH . V 8 HOH A 65 565 118 HOH HOH . W 8 HOH B 1 501 46 HOH HOH . W 8 HOH B 2 502 109 HOH HOH . W 8 HOH B 3 503 49 HOH HOH . W 8 HOH B 4 504 88 HOH HOH . W 8 HOH B 5 505 75 HOH HOH . W 8 HOH B 6 506 73 HOH HOH . W 8 HOH B 7 507 53 HOH HOH . W 8 HOH B 8 508 104 HOH HOH . W 8 HOH B 9 509 58 HOH HOH . W 8 HOH B 10 510 38 HOH HOH . W 8 HOH B 11 511 31 HOH HOH . W 8 HOH B 12 512 120 HOH HOH . W 8 HOH B 13 513 111 HOH HOH . W 8 HOH B 14 514 65 HOH HOH . W 8 HOH B 15 515 12 HOH HOH . W 8 HOH B 16 516 82 HOH HOH . W 8 HOH B 17 517 11 HOH HOH . W 8 HOH B 18 518 42 HOH HOH . W 8 HOH B 19 519 85 HOH HOH . W 8 HOH B 20 520 26 HOH HOH . W 8 HOH B 21 521 99 HOH HOH . W 8 HOH B 22 522 55 HOH HOH . W 8 HOH B 23 523 69 HOH HOH . W 8 HOH B 24 524 44 HOH HOH . W 8 HOH B 25 525 40 HOH HOH . W 8 HOH B 26 526 23 HOH HOH . W 8 HOH B 27 527 63 HOH HOH . W 8 HOH B 28 528 68 HOH HOH . W 8 HOH B 29 529 13 HOH HOH . W 8 HOH B 30 530 15 HOH HOH . W 8 HOH B 31 531 3 HOH HOH . W 8 HOH B 32 532 86 HOH HOH . W 8 HOH B 33 533 20 HOH HOH . W 8 HOH B 34 534 102 HOH HOH . W 8 HOH B 35 535 100 HOH HOH . W 8 HOH B 36 536 43 HOH HOH . W 8 HOH B 37 537 22 HOH HOH . W 8 HOH B 38 538 17 HOH HOH . W 8 HOH B 39 539 95 HOH HOH . W 8 HOH B 40 540 6 HOH HOH . W 8 HOH B 41 541 107 HOH HOH . W 8 HOH B 42 542 77 HOH HOH . W 8 HOH B 43 543 115 HOH HOH . W 8 HOH B 44 544 64 HOH HOH . W 8 HOH B 45 545 84 HOH HOH . W 8 HOH B 46 546 8 HOH HOH . W 8 HOH B 47 547 66 HOH HOH . W 8 HOH B 48 548 24 HOH HOH . W 8 HOH B 49 549 4 HOH HOH . W 8 HOH B 50 550 78 HOH HOH . W 8 HOH B 51 551 5 HOH HOH . W 8 HOH B 52 552 91 HOH HOH . W 8 HOH B 53 553 71 HOH HOH . W 8 HOH B 54 554 34 HOH HOH . W 8 HOH B 55 555 97 HOH HOH . W 8 HOH B 56 556 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 -34.063 9.994 34.147 1 62.85 ? C1 PEG 404 A 1 HETATM 2 O O1 PEG . . . F 4 -34.516 9.141 33.1 1 54.53 ? O1 PEG 404 A 1 HETATM 3 C C2 PEG . . . F 4 -32.969 9.387 34.976 1 61.93 ? C2 PEG 404 A 1 HETATM 4 O O2 PEG . . . F 4 -32.853 10.086 36.213 1 60.34 ? O2 PEG 404 A 1 HETATM 5 C C3 PEG . . . F 4 -33.996 9.924 37.047 1 55.69 ? C3 PEG 404 A 1 HETATM 6 C C4 PEG . . . F 4 -34.015 10.957 38.112 1 58.48 ? C4 PEG 404 A 1 HETATM 7 O O4 PEG . . . F 4 -35.187 10.894 38.902 1 60.42 ? O4 PEG 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 7 #